mRNA_E_fasciculatus_S2_contig9849.17853.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9849.17853.1
Unique NamemRNA_E_fasciculatus_S2_contig9849.17853.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: ArfGAP (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY2_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.240e-55
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 2 
Query:  356 GGGARMWSLRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMDR 655
            GGGA MWSLRLSECAALG LAGAVEALAHGGDPRWTNP+DQHRTALHC AATGDLGCCEF+IQNGA VLSLDERQ SPLDIACLGNQVPAVEYFSDKMDR
Sbjct:  662 GGGAEMWSLRLSECAALGDLAGAVEALAHGGDPRWTNPEDQHRTALHCAAATGDLGCCEFLIQNGADVLSLDERQCSPLDIACLGNQVPAVEYFSDKMDR 761
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G725_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 3.500e-54
Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 2 
Query:  371 MWSLRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMDR 655
            MWSLRLSECAALG LAGAVEALAHGGDPRWTNPDDQHRTALH  AATG+LGCC+F+IQNGA V SLDERQ SPLDI CLGNQVPAVEYF DKM R
Sbjct:    1 MWSLRLSECAALGDLAGAVEALAHGGDPRWTNPDDQHRTALHFAAATGELGCCDFLIQNGADVFSLDERQCSPLDIPCLGNQVPAVEYFLDKMGR 95
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP4_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.610e-26
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 2 
Query:  479 HRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMDR 655
            HRTALHC AATGDLGCCE +IQN A V SLD RQ SPLDIACLGNQVPAVE+FSDKMDR
Sbjct:   15 HRTALHCAAATGDLGCCESIIQNIADVFSLDGRQCSPLDIACLGNQVPAVEHFSDKMDR 73
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Topoisom_bac (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIP5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.510e-23
Identity = 66/90 (73.33%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:  175 RGPRAGLWRAGAGAPREG*EETRVAQREAVAAAAAIAGDLAGAAAG*TGTRWAGATASRRGGWGEDVVVATVGVRGVGVSRGSRRGVGPR 444
            RGPRAGLWRAGAGA R+G +E+ VA +EAVAAAAAI GDLA  A G TGTR AGA A+R GG G  VVVATVGVRG G S GSRRG GPR
Sbjct:   84 RGPRAGLWRAGAGARRKGEKESTVAPKEAVAAAAAITGDLARTAEGWTGTRRAGAAAAR-GGAGRGVVVATVGVRGGGGSGGSRRGFGPR 172
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N2_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.580e-19
Identity = 50/64 (78.12%), Postives = 52/64 (81.25%), Query Frame = 3 
Query:   36 LRGMGTERLPRIPWE----QREGWEKPPANSPGDLKRSYIQAKYVWEGFVEGSTSRLVAGGGWG 215
            LR +G  R   I WE    QREGWEKP ANSPGDLKRSYIQAKYVW+GFVEGSTSRLVAGGGWG
Sbjct:  624 LREVGNARSNAI-WEHSLAQREGWEKPTANSPGDLKRSYIQAKYVWKGFVEGSTSRLVAGGGWG 686
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG56_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.960e-8
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 2 
Query:  413 LAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMD 652
            L G ++AL HG +  W NPDD+ R  +   A  G +   EF++ NGA + +LD  + + +D+A +   V  VE+   KM+
Sbjct:  857 LQGCLDALIHGAEIDWKNPDDRSRCPMAAAAEKGYVDVIEFLLLNGADINNLDHEECTVMDVAAMAGNVEVVEFLHAKME 936
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Arf-GAP (with coiled-coil, ANK repeat and PH domain-containing protein n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WS19_CHACN)

HSP 1 Score: 60.8 bits (146), Expect = 3.840e-7
Identity = 35/90 (38.89%), Postives = 44/90 (48.89%), Query Frame = 2 
Query:  413 LAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMDR*ANKTWPDI 682
            L    EALAHG    W NP+++ RT L      G L  CEF++QNGA V   D + R PL  A +      V  F   + R AN+   DI
Sbjct:  673 LPDMAEALAHGAQVNWVNPEEEKRTPLIMAVHGGSLVTCEFLLQNGASVNQQDAQGRGPLHHATILGHTGQVCLF---LKRGANQNATDI 759
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Arf-GAP (with coiled-coil, ANK repeat and PH domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PQN1_ORNAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.670e-6
Identity = 35/91 (38.46%), Postives = 43/91 (47.25%), Query Frame = 2 
Query:  365 ARMWSLRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYF 637
            A+   LRL   A    L    EALAHG D  W NP++   T+L      G L  CEF++QNGA V   D + R PL  A +      V  F
Sbjct:  560 AKSSGLRLYRAAFEKNLPVMAEALAHGADVNWANPEENKATSLIQAVLGGSLVTCEFLLQNGASVNQRDVKGRGPLHHATVLGHTGQVCLF 650
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Arf-GAP (with coiled-coil, ANK repeat and PH domain-containing protein n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8NEA7_ORNAN)

HSP 1 Score: 58.2 bits (139), Expect = 3.010e-6
Identity = 34/86 (39.53%), Postives = 41/86 (47.67%), Query Frame = 2 
Query:  380 LRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYF 637
            LRL   A    L    EALAHG D  W NP++   T+L      G L  CEF++QNGA V   D + R PL  A +      V  F
Sbjct:  549 LRLYRAAFEKNLPVMAEALAHGADVNWANPEENKATSLIQAVLGGSLVTCEFLLQNGASVNQRDVKGRGPLHHATVLGHTGQVCLF 634
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Arf-GAP (with coiled-coil, ANK repeat and PH domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PCU0_ORNAN)

HSP 1 Score: 58.2 bits (139), Expect = 3.010e-6
Identity = 34/86 (39.53%), Postives = 41/86 (47.67%), Query Frame = 2 
Query:  380 LRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYF 637
            LRL   A    L    EALAHG D  W NP++   T+L      G L  CEF++QNGA V   D + R PL  A +      V  F
Sbjct:  553 LRLYRAAFEKNLPVMAEALAHGADVNWANPEENKATSLIQAVLGGSLVTCEFLLQNGASVNQRDVKGRGPLHHATVLGHTGQVCLF 638
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ArfGAP1.240e-5593.00n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Uncharacterized3.500e-5487.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.610e-2684.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Topoisom_bac4.510e-2373.33domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.580e-1978.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.960e-835.00protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Arf-GAP3.840e-738.89with coiled-coil, ANK repeat and PH domain-contain... [more]
Arf-GAP1.670e-638.46with coiled-coil, ANK repeat and PH domain-contain... [more]
Arf-GAP3.010e-639.53with coiled-coil, ANK repeat and PH domain-contain... [more]
Arf-GAP3.010e-639.53with coiled-coil, ANK repeat and PH domain-contain... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9849contigE_fasciculatus_S2_contig9849:248..5207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score88.6
Seed ortholog evalue3e-15
Seed eggNOG ortholog2880.D8LRY2
Model size684
KEGG koko:K12488,ko:K12489,ko:K14820
KEGG Pathwayko04144,ko04666,map04144,map04666
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
Cds size495
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9849.17853.1prot_E_fasciculatus_S2_contig9849.17853.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9849 292..2761 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.2303417-UTR-E_fasciculatus_S2_contig9849:247..2911696842628.2303417-UTR-E_fasciculatus_S2_contig9849:247..291Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9849 248..291 +
1696842628.2890103-UTR-E_fasciculatus_S2_contig9849:2761..28381696842628.2890103-UTR-E_fasciculatus_S2_contig9849:2761..2838Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9849 2762..2838 +
1696842628.3080592-UTR-E_fasciculatus_S2_contig9849:5139..52071696842628.3080592-UTR-E_fasciculatus_S2_contig9849:5139..5207Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9849 5140..5207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.2444823-CDS-E_fasciculatus_S2_contig9849:291..3271696842628.2444823-CDS-E_fasciculatus_S2_contig9849:291..327Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9849 292..327 +
1696842628.2558317-CDS-E_fasciculatus_S2_contig9849:1154..15171696842628.2558317-CDS-E_fasciculatus_S2_contig9849:1154..1517Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9849 1155..1517 +
1696842628.266728-CDS-E_fasciculatus_S2_contig9849:2135..22141696842628.266728-CDS-E_fasciculatus_S2_contig9849:2135..2214Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9849 2136..2214 +
1696842628.2783015-CDS-E_fasciculatus_S2_contig9849:2744..27611696842628.2783015-CDS-E_fasciculatus_S2_contig9849:2744..2761Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9849 2745..2761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9849.17853.1

>prot_E_fasciculatus_S2_contig9849.17853.1 ID=prot_E_fasciculatus_S2_contig9849.17853.1|Name=mRNA_E_fasciculatus_S2_contig9849.17853.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=165bp
MGTERLPRIPWEQREGWEKPPANSPGDLKRSYIQAKYVWEGFVEGSTSRL
VAGGGWGATRGVGGDQSSSEGGGGGSSSHSRRSSRGGGGVNGDSMGGSDG
FEARGVGRGCGRCDCRSARRWGVSREPSRRWPTAATHDGRTPTISTGQPC
IATRQPETWVAASS*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9849:248..5207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9849.17853.1 ID=mRNA_E_fasciculatus_S2_contig9849.17853.1|Name=mRNA_E_fasciculatus_S2_contig9849.17853.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4960bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9849:248..5207+ (Ectocarpus fasciculatus EfasUO2)
CTCCAGATGCAGGGAGGCTCAAATGGCAGTACCGCTTGCGCGGTATGGGA
ACGGAGAGGTTGCCGAGAATACCTTGGGAGGCGAGTTGGGCAAAAAAGAA
AAAGACAACCCACGGAGTCGGTCGATGTTGTAGATGACGTATGGCAGGGG
TCCGAAGTTGACGAAGGTGACACGCTGGAAACGGAAGGTCTACAGGGGTT
GAAGAGTAAGATATCTGTTGCTTTTGCTGAGAGAGAAGAACAGCATCTAA
CCAAAGAAACCAAGGATAAAGAGGGTCTGTACTAAATGTTGAAAGAAGGA
ATAGGGTTCACGGAATGCCTCCATGGACAATGGATGCAGGGACAAAGCCG
AACGTCAAATTTTGGGCCGGGGACATTGGCCTTCGAGAACGTAGAGGAAG
ATTTCGGGGGGTAAGCGATGAAGACGGCAAAATCAAATGTGAATGCGGCT
CTGAGTGCGAAGACGGCGTTCATTCAGTTGCGGACTGTCCGTTGTGCAAC
AAGAGAGGGAAGTGTACATGACTGAGCTGGGGAAAGTAGAAGGAAGGTAC
AGAGAGATGTTTGAGGCATGGAGAAGACGGTAGCTGTACTAGGACATAGG
AAGTGGGTTGAAAAGGCGGGAAGTGATATCGATACAATTGATATGCTAGG
GAAGGGACACGTTTGAGCCACCTTTGACCAAGTAGGAAGTGACAGTTGGC
CATCAGCAATCGGTCCAACGCTCTGTTCTCTCGAGGGCGCGTGGTTAACC
GCTAAGGTATCCAAAACATAAGACTACGCCCCCCCCCCCCCCCCCTCCCC
CTCAACTCTCCCCTGTTCTGTAGAGCGATTACATAACACAAACAAAAACA
AAAACCCGCCCCCCCCCCCCCCCCCCCCCCCGCCCTCCCGCTCAACGCAA
TAACCAGCAACGGGAAGGCTGGGAAAAGCCACCGGCGAACTCCCCCGGCG
ACCTCAAGCGGAGTTATATCCAGGCCAAATACGTCTGGGAAGGTTTTGTA
GAGGGGTCCACGAGCAGGCTTGTGGCGGGCGGGGGCTGGGGCGCCACGCG
AGGGGTAGGAGGAGACCAGAGTAGCTCAGAGGGAGGCGGTGGCGGCAGCA
GCAGCCATAGCCGGCGATCTAGCAGGGGCGGCGGCGGGGTGAACGGGGAC
TCGATGGGCGGGAGCGACGGCTTCGAGGCGAGGGGGGTGGGGCGAGGATG
TGGTCGTTGCGACTGTCGGAGTGCGCGGCGTTGGGGTGTCTCGCGGGAGC
CGTCGAGGCGTTGGCCCACGGTGAGATAGACAGACTGACAGGCAGACACC
ACATCTTTGACGGCCTATTTTTGGCGCCTCTGACATCCCAGATACAAGAA
CATTTTATTTATGCTACTGTAGTTTTGCCTTTGTGTCCTCTTGGTGGCAC
CCCTAACATACCATTTTCTCGATGGAGCGTTGGGGTGCTGGCCCTCGATG
ACGTAAGAGGAGACGCCCCGTGGCGTGTGTACGCGTCCTGCTTGCTGTCC
GTAGGGTTTCGAACGTGGTGGCTTGTCTCTTTCTCTCTCTGTCGTTTGGG
CGGTTGTCTTTGTGACAGTCTTGGTCGCGACAAACGCTCGCTTGCTCTGT
ACAAGGGTTTCGAACGTGGTCGCGTGTCTATTTGATGTGTTTGTCTCTTT
GATGTGTTTTTGGTTGTCCTTGCCATGTATTTTGTTTTTCATTGCAACGA
AACGGTGCGGTTGTTCGTCCCTCAAGTCGCAACCCTCTCTTCCGTGTGCC
TGTGGGGCGTGTATGTGGGTTTTCGAATCGCCATGCTACAACACCAGCTA
ATCATTAAATTGCTGGCAGTCCAAAGTGTGTGTGTGTATCGCTTGCTTTG
CTGCTCACGCTTTCCTGCCAATCGTTCGTTGTTTGTAGGCGGCGACCCAC
GATGGACGAACCCCGACGATCAGCACAGGACAGCCCTGCATTGCGACGCG
GCAACCGGAGACCTGGGGTGAGAAAGAACAGCCAGGGAGCCTTAAGGGTA
TCAAGTACCCGCATTATATTTTTCGTTTCTTTGATTTCTGGAATGGTATG
CACTACATACCCTGACCACGGAAGATGGCCGCGTCAATTGGATCAGTTCG
ATCGTGTTGAGCGGAGACCGAACGTGAGGCCAACACCAATATCTCCGCCA
CAGAAATCACGCTTGTCCTCCCCCAAGGGTTCGGACCTCTGACCCACTTG
CTGCAACAGTGGTACTGTCCGTGTGCCGTTGACAGTGCTTGGTTTCAGCC
TTGACGGCATCTCACCCTCCTGACATGTCCACTGCTGTTGTGGGTAACCT
GTGCTCTGCTGCCTTGTTCCTCCTTTGTCGAAGTTGGTTAAATCATCGTC
GTAGTCGATAATTTTTTTTCTTTGTCTTGCTTGTTCGTCGCGGTTGTGAA
GTTGAGAGTGATTTAACCATCCCCTGCACGAATGCGTCTTGTCTTACTCT
AGTATGTTTCGTTTTTTATCTTGTCGTTTTTCTCGTTACATTTGCAGTTG
CTGCGAGTTCATGATCCAGAACGGCGCCCACGTGCTGTCGCTGGACGAAC
GGCAACGTAGCCCCCTGGACATCGCTTGTCTGGGCAATCAGGTGCTTATC
GGTAGCCTTCAACGGTTTTCGTTGAAGTAAGCATGTCGGATGAAGCATTC
AATTGGGGAAGTCGGGCTAGGATTGAGGGTAGGACTTCGTACCCTTTTTA
ATTTCATGATAAATTTACATTACAGTCTTGACCTACAAGGTCCCCACCTC
TCCTGGGGATGACGCAAGAGGACATGATGGAACGGTTTCATCAGGGGCTG
TGTGTCCATCGAAGTGAATGTAGCGGCCATGCCTAGGGACTAAGAACCCC
ATCCTTGGCCAGAACTACAGGTTCGTGAGTGCGGGAGCAAACTGTGCGGG
GTTGTGGGTAGGGGAGTGCAGTGGGGTGCCGCGCGGTCGTGTGGTAGCCA
TATGGGACATCCCGCTACACAAGGTGCAAGGCATTAGGGAACCTCCGCAT
TAGGGAAAGGGGAACCTCTGCGTTTCGGAACCCCCTCGCGTTATGCACTA
GGTACCCTCTGCGAACCTCTGCGTTGGGGAACCTCACCCCCCATCAACGT
TGGGGAACCGCTGCATTAGGGAACCTCAACCCGAAATTGGCGGGGGCAGA
GACGATTTCGAGTACAACTATTGATTAGCCGTTGCATCAGGGAACCCCCC
ATCAAAAACGCACTACAATTTGCTGTGTGTTTGGTCGAGAAAACACGATT
TCGTTTTCGTAGTCGCTGGACAGGCAAAACGCACTACAATTTGCTGTGTG
TTTGGTCGAGGAAACACGATTTCGTTTTCGTATTCGCTGGACAGGCAAAA
CGCACTACAATTTGCTGTGTGTTTGGTCGAGGAAACACGATTTCGTATTC
GCCGGACAGGCAAAACGCACTACAATTTGCTGCGTGTTTGGTCGAGGAAA
CACGATTTCGTTTTCGTATTCGCTTGAAACGCCTGATGCCCAACGGGGCA
ACCCTCCCACACTACAATAACAATGACATTTGCTCACCGCCCATGAACTG
CCCACCATGGGCTGCCCATGGGCTTGCCCGTGAACATCCCCCCATGGATG
CCCCATGGGTACCAAATTTGTAGCGCACGAGAAAACAACCATGACCTGCC
CATGAGCGTTCTAGCCGGCGAGTGGCGGGAGGTACAGACAGATCGATCAC
GTTTACCCCCCACCTACATGCTGCGGAACTCCCTCTGTTGACCATATCTC
TGCACTGACGTGTTTGATGTGGGCGTATGATTGCTTGCACGAACGGTATG
GATTGTGCCAACGCGATGCAAAGGGTTTGAGGACGATTAGAGCTGTGTGG
CTGGAGATATCAGACGATGGCCACTTCCTGCGATGCTGCGGAGCCCCTTT
TTCGACCGTATCTCTTCGATTTCTGGTCGGATTTAGTGCCTGACTATGTT
TTCAGATAGTTGCGACTCATACCTACACGATGAAATTGGGTTGAGGCCGG
TTGAAGCTCTGTGGGAGGAGATATTCCTGGCGGGGCAAATAGCGTTGCCG
TTTGTTGAAGCATTAGTATCGCGCGTACCGATTAACAATGTTGGGGCGCG
TGTGTAATGTAAGGGTAACGAATCGAAGGAGGTGCGTAAGGAACTTGCAG
GATTTGTGCAGTAAATTAGAACCGAGCGATGAGGTTGTAACACACGTGAC
GTAGGAACGGTTACTTTACTTGTTGTTGATGGAAAATTGTGTACTTTGGG
TTGAAGTTCTCTTATGCAGTTGCTCCCCAACGTTGATGGGGGGTGAGGTT
CCCCAACGTAGAGGTTCGCAGAGGTTCCCATAGCGCAAAACGCGAGGGGG
TTCCCTACCGCATAGGCTCCCCTTGCAAGAACAGGGATAGAAGTTCCCTC
ATGCGGAGGTTCCCTAATGTCTTGCACCCTGTGTAGCGGGATGTCCTGTA
TGGCTACCACCCGACCGCGCGGCGCACCACTGCACCTCTCGACTTATTGC
CACCGTACCCAGCAGTAGGATAGCTCTTCGCTCCTGAAGCTAGGGGTCGA
AAAATCGGGGACCAGACACTGCATCTCTAATATGATAGGAGTAGGAACGG
TGACCGAGCTAGTCAGGGATGGATTCATGGTCAACGGTGGAATCTATAGC
ACGGAGTATGAGGTAGCAACACACAGTGGACAATTGGATACCTGGTCCTG
TGGGAAGGAACAATGCGCCGTCCTCTCGAGGACGCGTGGTCAATGGTCCA
GCAGCTAAGGCATGCAAAACATAAGAGTACCCACCCCCTCCATTCGATGG
CTTATGTTCCGGGTCTGAAACCTGTACCGCCTCTTCCCTGGATGCGACGT
CACGCGTTGTTGGTCTATATGTGTGTTTATTTTTCCCTTCAGGTGCCCGC
GGTGGAGTATTTCTCGGACAAGATGGATCGGTAGGCGAACAAGACTTGGC
CGGACATTTT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9849:248..5207+

>mRNA_E_fasciculatus_S2_contig9849.17853.1 ID=mRNA_E_fasciculatus_S2_contig9849.17853.1|Name=mRNA_E_fasciculatus_S2_contig9849.17853.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=495bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9849:248..5207+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAACGGAGAGGTTGCCGAGAATACCTTGGGAGCAACGGGAAGGCTG
GGAAAAGCCACCGGCGAACTCCCCCGGCGACCTCAAGCGGAGTTATATCC
AGGCCAAATACGTCTGGGAAGGTTTTGTAGAGGGGTCCACGAGCAGGCTT
GTGGCGGGCGGGGGCTGGGGCGCCACGCGAGGGGTAGGAGGAGACCAGAG
TAGCTCAGAGGGAGGCGGTGGCGGCAGCAGCAGCCATAGCCGGCGATCTA
GCAGGGGCGGCGGCGGGGTGAACGGGGACTCGATGGGCGGGAGCGACGGC
TTCGAGGCGAGGGGGGTGGGGCGAGGATGTGGTCGTTGCGACTGTCGGAG
TGCGCGGCGTTGGGGTGTCTCGCGGGAGCCGTCGAGGCGTTGGCCCACGG
CGGCGACCCACGATGGACGAACCCCGACGATCAGCACAGGACAGCCCTGC
ATTGCGACGCGGCAACCGGAGACCTGGGTTGCTGCGAGTTCATGA
back to top