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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9847.17852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N2_ECTSI) HSP 1 Score: 131 bits (329), Expect = 4.810e-36 Identity = 70/92 (76.09%), Postives = 70/92 (76.09%), Query Frame = 1 Query: 1 AANTGDAGTLIDAGWVLYHITRSGSDRIDAVQSAGLLSMMPDMLLHENHHVVRPVIRAMDNLACTSVAYRGALIEAGVLDPLVETLGHDSSK 276
AANTGDAGTLIDAGWVLYHITR GSDRIDAVQSAGLLSMMPDMLLHENHH ALIEAGVLDPLVETLGHDSSK
Sbjct: 170 AANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHH---------------------ALIEAGVLDPLVETLGHDSSK 240
BLAST of mRNA_E_fasciculatus_S2_contig9847.17852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL7_9PHAE) HSP 1 Score: 107 bits (268), Expect = 7.250e-26 Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 1 Query: 115 MMPDMLLHENHHVVRPVIRAMDNLACTSVAYRGALIEAGVLDPLVETLGHDSSK 276
MMPDMLLHENHHVVRPVIRAMDNLACTS AY GALIEAGVLDPLVETLGHDSSK
Sbjct: 1 MMPDMLLHENHHVVRPVIRAMDNLACTSSAYSGALIEAGVLDPLVETLGHDSSK 54
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9847.17852.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 4.810e-36 | 76.09 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Uncharacterized | 7.250e-26 | 96.30 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 0 |
| Seed ortholog score | 131.3 |
| Seed ortholog evalue | 2.2e-28 |
| Seed eggNOG ortholog | 2880.D7G3N2 |
| Model size | 279 |
| KEGG ko | ko:K15043 |
| KEGG Pathway | ko05164,map05164 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| EggNOG free text desc. | nuclear import signal receptor activity |
| EggNOG OGs | COG5064@1,KOG0166@2759 |
| Cds size | 276 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03036 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842628.1483154-CDS-E_fasciculatus_S2_contig9847:995..1036 | 1696842628.1483154-CDS-E_fasciculatus_S2_contig9847:995..1036 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9847 996..1036 + |
| 1696842628.1618693-CDS-E_fasciculatus_S2_contig9847:2073..2182 | 1696842628.1618693-CDS-E_fasciculatus_S2_contig9847:2073..2182 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9847 2074..2182 + |
| 1696842628.1730225-CDS-E_fasciculatus_S2_contig9847:2581..2644 | 1696842628.1730225-CDS-E_fasciculatus_S2_contig9847:2581..2644 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9847 2582..2644 + |
| 1696842628.1842463-CDS-E_fasciculatus_S2_contig9847:3157..3220 | 1696842628.1842463-CDS-E_fasciculatus_S2_contig9847:3157..3220 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9847 3158..3220 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9847.17852.1 >prot_E_fasciculatus_S2_contig9847.17852.1 ID=prot_E_fasciculatus_S2_contig9847.17852.1|Name=mRNA_E_fasciculatus_S2_contig9847.17852.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=92bp
AANTGDAGTLIDAGWVLYHITRSGSDRIDAVQSAGLLSMMPDMLLHENHH
VVRPVIRAMDNLACTSVAYRGALIEAGVLDPLVETLGHDSSK back to topmRNA from alignment at E_fasciculatus_S2_contig9847:996..3222+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9847.17852.1 ID=mRNA_E_fasciculatus_S2_contig9847.17852.1|Name=mRNA_E_fasciculatus_S2_contig9847.17852.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2227bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9847:996..3222+ (Ectocarpus fasciculatus EfasUO2)
GCGGCTAACACGGGCGACGCGGGCACACTCATTGATGCGGGGTGAGGATT
GGTACATGTAGGGAGAGATACACACGAATCCGAAGGGAGACGAAGAGAGA
GAGAGAAAGGCGATATGTGTAGAGACCGATGGCTAGACGGACTGAGAAGA
CATGACATGCAATGCAAGAGACACACAGAATGAGAAGAGGGAAGGGGGAG
AGAGATACAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAAAGGCAGTCAGG
AAGAGAGAGAGGGGGGGAGAGAGCGACCAGGAGGGAAAGAGGAAGGTATG
GTTAACCCAGATATATAGGAGACCAATAGGTGCAAAATAAATGTGGAGGC
AGTGGCCTCGTCGCAAGTCGATTTCCGCGTGTCAACGGCTGTGCAAAAGT
GATAAGTCGCTCGCGTGAAAGTGAGTAAGTGCCGTAGATTGCATATGTTA
CCACACCTCCAGCAACTGAATTTCAAAGCCCGGTTACTTTACTTTCCACC
ATGAGGAGGAAGCCAAAACCTCGTGATGCGTTTTCGGAAAGCCTCTGGAC
GTTTTCGAAGGTTTTAACCACGACGTTTTCGGCACCGTCACCGCTGTTTT
CTTTGCTGCAGAGAGTAGTCGAACTTTGACAATCGGTCGAGGGGGTGTGG
TATCTTGTGTCCTGTCACCTTCGGTAGTTGTCCTGAATCGATCGAGTTAT
GTATACCCACCGAAGGTATTGAGTCTCCCTGTGGTGGAGGTGCACGACGG
GGGCGTGACAACGGTGCTATTGTAGTGCGGTAGATAGGCGGTGGTAAGAA
CACCAAGTAACGCTGAAAGCTCCTTACCTGGCGTTGACGATGAAATTAGC
TGATTTGTATGGGCGATCGTTGAGCTAAGCCTTCCCAGCTGCCGTCGCCG
CTGCTACTGCTGGTGTTGTTGTTGCTGCTGCCGTTGCTACTGCCGCTGTT
GCTGCTACTGTTGTTGCTGTTGATATTGCTGTTGCTGATGCTTGTTGTGC
CGCTACCGCTGCTTACACGGTTGTGCTTGTTGACGCCGCTGTTGCCCACC
CCCACCCCCGGCCATGCCGGACGAGCAGGTGGGTACTGTACCACATTACC
AGGAGCGGGAGCGATCGCATCGATGCCGTACAGTCCGCCGGGTTGCTGTC
AATGATGCCCGACATGCTCCTGCACGAGAACCATCACGTGAGGACCGTGT
AGTTTCTTGCTTCCTCTGTGGGGGTAACTTAACCCACCCACAACACCTTC
TACGATATATATAGTTTTTAGGTTTGGATTATTTCACGAAGCACGTTTTC
TCGTGGTCAAGCTCTAAAGTTTCAAATTTATGGAGCCTGTAGTTTTGTAT
CTCCGCCGAAGTTATTTCAAGTTCGTGCATACAGCTTTTATTCTATTTGA
GCGTGAAGTTTTGTACCACCTCTTCCTAGTTTTTATTCCCAGAAAGGCTC
TTAGGTGTCGGCGCTTTCTTGTAGTTCAATCTGTCGAGCATAGTAAATAG
ATGGGTCGATTATCGGAACGCTGACCCTGCACCTTCGCGCGCTTGCGATG
TCGACTTCTACTGCTTGTTGAACCAATCCCAATCAGGTGGTGCGGCCGGT
GATCCGTGCGATGGACAACTTGGCCTGTACCTCGGTCGCGTACAGGGGGG
TGAGTGATTTACAGCAGTGGGGGGTGCACTCGTAACCAGCCGTGTATGTC
GTAGTCGTTAGACCATTGACCTACTCGTATCCCTAGGACAAAGCACGCAC
CGGACCAGGCTAACACATCACCAAGCGCGAAGCGCCGTGAGGTGTATGCG
GTGGGTCGCATGGAGGGTGCGCTGCACCCTGGGGCATAGGCTACCCGGCC
TTTGACGTGGAAATCCACGTAGCATGTTCATGGACTTTTCCACCCCTCTG
TGCGAGTTCCCCCACCTCCTTTCCCTGTTTCTAACATGTGGTGCGAATGG
TCGTCAGTCGAGCTTGCCCCGGATTGATACAGGGTGTCTCGAATCCGTAG
CAATGTGGAGATACGAGTACCCTTCACGAAGGGTACCGATCATCCCCAAC
GGCTGTCAAGAACGCTTCCCTCTTTTCGCGCCAGCAGCGTTTGCATGCCC
CCCCCCCCCCTCCCAACACACACATGCACGTCCCACCTTTTACTCGACAT
CACTCTTGACAGGCGTTGATCGAGGCCGGGGTGCTAGATCCGCTGGTGGA
GACGTTGGGGCACGACAGCTCCAAGGT back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9847:996..3222+ >mRNA_E_fasciculatus_S2_contig9847.17852.1 ID=mRNA_E_fasciculatus_S2_contig9847.17852.1|Name=mRNA_E_fasciculatus_S2_contig9847.17852.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9847:996..3222+ (Ectocarpus fasciculatus EfasUO2)
GCGGCTAACACGGGCGACGCGGGCACACTCATTGATGCGGGGTGGGTACT
GTACCACATTACCAGGAGCGGGAGCGATCGCATCGATGCCGTACAGTCCG
CCGGGTTGCTGTCAATGATGCCCGACATGCTCCTGCACGAGAACCATCAC
GTGGTGCGGCCGGTGATCCGTGCGATGGACAACTTGGCCTGTACCTCGGT
CGCGTACAGGGGGGCGTTGATCGAGGCCGGGGTGCTAGATCCGCTGGTGG
AGACGTTGGGGCACGACAGCTCCAAG back to top
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