mRNA_E_fasciculatus_S2_contig9847.17852.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9847.17852.1
Unique NamemRNA_E_fasciculatus_S2_contig9847.17852.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9847.17852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 4.810e-36
Identity = 70/92 (76.09%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    1 AANTGDAGTLIDAGWVLYHITRSGSDRIDAVQSAGLLSMMPDMLLHENHHVVRPVIRAMDNLACTSVAYRGALIEAGVLDPLVETLGHDSSK 276
            AANTGDAGTLIDAGWVLYHITR GSDRIDAVQSAGLLSMMPDMLLHENHH                     ALIEAGVLDPLVETLGHDSSK
Sbjct:  170 AANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHH---------------------ALIEAGVLDPLVETLGHDSSK 240
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BLAST of mRNA_E_fasciculatus_S2_contig9847.17852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 7.250e-26
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  115 MMPDMLLHENHHVVRPVIRAMDNLACTSVAYRGALIEAGVLDPLVETLGHDSSK 276
            MMPDMLLHENHHVVRPVIRAMDNLACTS AY GALIEAGVLDPLVETLGHDSSK
Sbjct:    1 MMPDMLLHENHHVVRPVIRAMDNLACTSSAYSGALIEAGVLDPLVETLGHDSSK 54
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9847.17852.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.810e-3676.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.250e-2696.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9847contigE_fasciculatus_S2_contig9847:996..3222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score131.3
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D7G3N2
Model size279
KEGG koko:K15043
KEGG Pathwayko05164,map05164
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.nuclear import signal receptor activity
EggNOG OGsCOG5064@1,KOG0166@2759
Cds size276
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.1483154-CDS-E_fasciculatus_S2_contig9847:995..10361696842628.1483154-CDS-E_fasciculatus_S2_contig9847:995..1036Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9847 996..1036 +
1696842628.1618693-CDS-E_fasciculatus_S2_contig9847:2073..21821696842628.1618693-CDS-E_fasciculatus_S2_contig9847:2073..2182Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9847 2074..2182 +
1696842628.1730225-CDS-E_fasciculatus_S2_contig9847:2581..26441696842628.1730225-CDS-E_fasciculatus_S2_contig9847:2581..2644Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9847 2582..2644 +
1696842628.1842463-CDS-E_fasciculatus_S2_contig9847:3157..32201696842628.1842463-CDS-E_fasciculatus_S2_contig9847:3157..3220Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9847 3158..3220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9847.17852.1prot_E_fasciculatus_S2_contig9847.17852.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9847 996..3220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9847.17852.1

>prot_E_fasciculatus_S2_contig9847.17852.1 ID=prot_E_fasciculatus_S2_contig9847.17852.1|Name=mRNA_E_fasciculatus_S2_contig9847.17852.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=92bp
AANTGDAGTLIDAGWVLYHITRSGSDRIDAVQSAGLLSMMPDMLLHENHH
VVRPVIRAMDNLACTSVAYRGALIEAGVLDPLVETLGHDSSK
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mRNA from alignment at E_fasciculatus_S2_contig9847:996..3222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9847.17852.1 ID=mRNA_E_fasciculatus_S2_contig9847.17852.1|Name=mRNA_E_fasciculatus_S2_contig9847.17852.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2227bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9847:996..3222+ (Ectocarpus fasciculatus EfasUO2)
GCGGCTAACACGGGCGACGCGGGCACACTCATTGATGCGGGGTGAGGATT
GGTACATGTAGGGAGAGATACACACGAATCCGAAGGGAGACGAAGAGAGA
GAGAGAAAGGCGATATGTGTAGAGACCGATGGCTAGACGGACTGAGAAGA
CATGACATGCAATGCAAGAGACACACAGAATGAGAAGAGGGAAGGGGGAG
AGAGATACAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAAAGGCAGTCAGG
AAGAGAGAGAGGGGGGGAGAGAGCGACCAGGAGGGAAAGAGGAAGGTATG
GTTAACCCAGATATATAGGAGACCAATAGGTGCAAAATAAATGTGGAGGC
AGTGGCCTCGTCGCAAGTCGATTTCCGCGTGTCAACGGCTGTGCAAAAGT
GATAAGTCGCTCGCGTGAAAGTGAGTAAGTGCCGTAGATTGCATATGTTA
CCACACCTCCAGCAACTGAATTTCAAAGCCCGGTTACTTTACTTTCCACC
ATGAGGAGGAAGCCAAAACCTCGTGATGCGTTTTCGGAAAGCCTCTGGAC
GTTTTCGAAGGTTTTAACCACGACGTTTTCGGCACCGTCACCGCTGTTTT
CTTTGCTGCAGAGAGTAGTCGAACTTTGACAATCGGTCGAGGGGGTGTGG
TATCTTGTGTCCTGTCACCTTCGGTAGTTGTCCTGAATCGATCGAGTTAT
GTATACCCACCGAAGGTATTGAGTCTCCCTGTGGTGGAGGTGCACGACGG
GGGCGTGACAACGGTGCTATTGTAGTGCGGTAGATAGGCGGTGGTAAGAA
CACCAAGTAACGCTGAAAGCTCCTTACCTGGCGTTGACGATGAAATTAGC
TGATTTGTATGGGCGATCGTTGAGCTAAGCCTTCCCAGCTGCCGTCGCCG
CTGCTACTGCTGGTGTTGTTGTTGCTGCTGCCGTTGCTACTGCCGCTGTT
GCTGCTACTGTTGTTGCTGTTGATATTGCTGTTGCTGATGCTTGTTGTGC
CGCTACCGCTGCTTACACGGTTGTGCTTGTTGACGCCGCTGTTGCCCACC
CCCACCCCCGGCCATGCCGGACGAGCAGGTGGGTACTGTACCACATTACC
AGGAGCGGGAGCGATCGCATCGATGCCGTACAGTCCGCCGGGTTGCTGTC
AATGATGCCCGACATGCTCCTGCACGAGAACCATCACGTGAGGACCGTGT
AGTTTCTTGCTTCCTCTGTGGGGGTAACTTAACCCACCCACAACACCTTC
TACGATATATATAGTTTTTAGGTTTGGATTATTTCACGAAGCACGTTTTC
TCGTGGTCAAGCTCTAAAGTTTCAAATTTATGGAGCCTGTAGTTTTGTAT
CTCCGCCGAAGTTATTTCAAGTTCGTGCATACAGCTTTTATTCTATTTGA
GCGTGAAGTTTTGTACCACCTCTTCCTAGTTTTTATTCCCAGAAAGGCTC
TTAGGTGTCGGCGCTTTCTTGTAGTTCAATCTGTCGAGCATAGTAAATAG
ATGGGTCGATTATCGGAACGCTGACCCTGCACCTTCGCGCGCTTGCGATG
TCGACTTCTACTGCTTGTTGAACCAATCCCAATCAGGTGGTGCGGCCGGT
GATCCGTGCGATGGACAACTTGGCCTGTACCTCGGTCGCGTACAGGGGGG
TGAGTGATTTACAGCAGTGGGGGGTGCACTCGTAACCAGCCGTGTATGTC
GTAGTCGTTAGACCATTGACCTACTCGTATCCCTAGGACAAAGCACGCAC
CGGACCAGGCTAACACATCACCAAGCGCGAAGCGCCGTGAGGTGTATGCG
GTGGGTCGCATGGAGGGTGCGCTGCACCCTGGGGCATAGGCTACCCGGCC
TTTGACGTGGAAATCCACGTAGCATGTTCATGGACTTTTCCACCCCTCTG
TGCGAGTTCCCCCACCTCCTTTCCCTGTTTCTAACATGTGGTGCGAATGG
TCGTCAGTCGAGCTTGCCCCGGATTGATACAGGGTGTCTCGAATCCGTAG
CAATGTGGAGATACGAGTACCCTTCACGAAGGGTACCGATCATCCCCAAC
GGCTGTCAAGAACGCTTCCCTCTTTTCGCGCCAGCAGCGTTTGCATGCCC
CCCCCCCCCCTCCCAACACACACATGCACGTCCCACCTTTTACTCGACAT
CACTCTTGACAGGCGTTGATCGAGGCCGGGGTGCTAGATCCGCTGGTGGA
GACGTTGGGGCACGACAGCTCCAAGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9847:996..3222+

>mRNA_E_fasciculatus_S2_contig9847.17852.1 ID=mRNA_E_fasciculatus_S2_contig9847.17852.1|Name=mRNA_E_fasciculatus_S2_contig9847.17852.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9847:996..3222+ (Ectocarpus fasciculatus EfasUO2)
GCGGCTAACACGGGCGACGCGGGCACACTCATTGATGCGGGGTGGGTACT
GTACCACATTACCAGGAGCGGGAGCGATCGCATCGATGCCGTACAGTCCG
CCGGGTTGCTGTCAATGATGCCCGACATGCTCCTGCACGAGAACCATCAC
GTGGTGCGGCCGGTGATCCGTGCGATGGACAACTTGGCCTGTACCTCGGT
CGCGTACAGGGGGGCGTTGATCGAGGCCGGGGTGCTAGATCCGCTGGTGG
AGACGTTGGGGCACGACAGCTCCAAG
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