mRNA_E_fasciculatus_S2_contig9844.17850.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9844.17850.1
Unique NamemRNA_E_fasciculatus_S2_contig9844.17850.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 8.390e-54
Identity = 105/151 (69.54%), Postives = 115/151 (76.16%), Query Frame = 3
Query:   78 QTRYLDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLVLYTDLDIPIENV 530
            +TR LDAFV+ALSQAC+GG KRWYASTLEL+LTSLD+CRACR+ SIL V V  QTP S W  R  QTRP+TRS  L +SSRVPVVRALRLTW LS E LLR AA ELW  SE L L G    +SLGS V WPRGLTQLVLYTD DI +  V
Sbjct:    8 RTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDIAMGTV 158          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.540e-51
Identity = 96/149 (64.43%), Postives = 108/149 (72.48%), Query Frame = 3
Query:   81 TRYLDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLVLYTDLDIPIEN 527
            TR  DAF +ALSQAC+GG KRWY ST EL+L SLD+CRACRS   L VRV+  TP S W P   Q  P+T+SSK+ V SRVPVVRALRLTW  S ETL++ AA ELW  SE L + GPL AASLGS VW P GLTQLVL TD  IP+E 
Sbjct:    7 TRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVW-PLGLTQLVLDTDFHIPMEK 154          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.880e-30
Identity = 73/145 (50.34%), Postives = 94/145 (64.83%), Query Frame = 3
Query:   81 TRYLDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLVLYTDLDI 515
            ++ LDAFVVAL+QAC G  KRWY STLEL+L SL++C ACR +  L VRV  QTP S WFP    T  + RS K+ +SSRVPVV+A  LTW L    L + +ATE+   S C   +    AASL SAVW P+ L ++V  +D+ +
Sbjct:    7 SKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVW-PQRLKRMVFESDMTV 150          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.670e-27
Identity = 68/140 (48.57%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   90 LDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLVLYTDL 509
            L AF+VAL+Q C G  KRWYASTLEL+L SL+ C ACR +  L VRV  QTP S W P  +      RS +  VS+RVP V+A  LTW L  E LL+T+A EL   S+   + G    ASLGS  W    L +LV  +D+
Sbjct:   18 LRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDM 157          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.290e-26
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:   78 QTRYLDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLVL-YTDLDIPIE 524
            Q R LDAFVVALSQ  +GG KRWY STL+L+L SL+ C ACRS  +L V V ++TP + W   + Q  P+      G S+RVP V+A+ LTW   TE+ L +A++ELW   E L L   L  A+L S VW P+GL +LV+  T   IP+E
Sbjct:    6 QRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLW--SLGQANPTA-----GTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVW-PQGLQRLVMDCTVFIIPLE 147          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.090e-25
Identity = 65/135 (48.15%), Postives = 83/135 (61.48%), Query Frame = 3
Query:   90 LDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLV 494
            LD  +VAL+QAC G  KRWY STLEL+L SL++C ACRS  +L V V   TP + W  R ++T PS RS ++  S+RVP V+AL  TW L  + L + AA E    +E    DG   AAS+ S VW P  L +LV
Sbjct:   90 LDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVW-PESLKRLV 223          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.670e-25
Identity = 74/175 (42.29%), Postives = 91/175 (52.00%), Query Frame = 3
Query:   81 TRYLDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLG----------------------------VSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLVLYTDLDIPI 521
            +R  DA ++A+SQA +G  KRWY STLEL+L SL+ CRACR +  + VRV + TP S W P    TR  TRSSK                              +SSRVPV +AL LTW L TE LL+  A ELW   E L L   L  + L S V WP+ L +L L T  +  I
Sbjct:    7 SRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSPSDLVS-VAWPQNLKRLALETGFEAAI 180          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.360e-24
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 3
Query:   81 TRYLDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVV 332
            T+  DAFVVALSQAC+GG KR Y STLEL L SLD+CRA RS S L VRV  QTP SFW P   Q RP   SSK+ +SSRVPVV
Sbjct:   20 TQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFWSPPKVQLRPDEGSSKIRLSSRVPVV 103          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 4.610e-23
Identity = 66/149 (44.30%), Postives = 85/149 (57.05%), Query Frame = 3
Query:   69 GTRQTRYLDAFVVALSQACKGGRKRWYASTLELKLTSLDMCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLVLYTDLDI 515
            G  ++  LDAF+VAL QA  G  KRWY STLEL+L SL+ C ACRS    DV++  QTP S W PR +      RS +  + SRVP V+A    W L  E LL  +ATEL   SE     GP  A S G   W+ + LT+L+ Y++  +
Sbjct:   23 GLGRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQK-LTRLMFYSERSV 170          
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.320e-20
Identity = 64/113 (56.64%), Postives = 67/113 (59.29%), Query Frame = 3
Query:  192 RACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVRALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLTQLVLYTDLDIPIENV 530
            RACRS SIL                   TRP+T  S + VS R P V AL LTW L  E+LLRTAA ELW  SECL L G L AASL SA WWPR LTQLVL  DLDI  ENV
Sbjct: 1086 RACRSTSIL------------------HTRPNTSKSAVPVSGRAPAVWALHLTWALPMESLLRTAAIELWTWSECLELQGSLCAASLRSANWWPRRLTQLVLKADLDILTENV 1180          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9844.17850.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
Uncharacterized8.390e-5469.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.540e-5164.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.880e-3050.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.670e-2748.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.290e-2648.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.090e-2548.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.670e-2542.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.360e-2466.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.610e-2344.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.320e-2056.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9844contigE_fasciculatus_S2_contig9844:706..2098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1001
Hectar predicted targeting categorymitochondrion
Exons2
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.9733772-UTR-E_fasciculatus_S2_contig9844:705..7801696842627.9733772-UTR-E_fasciculatus_S2_contig9844:705..780Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9844 706..780 +
1696842627.9867585-UTR-E_fasciculatus_S2_contig9844:1172..12821696842627.9867585-UTR-E_fasciculatus_S2_contig9844:1172..1282Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9844 1173..1282 +
1696842628.0048826-UTR-E_fasciculatus_S2_contig9844:1963..20981696842628.0048826-UTR-E_fasciculatus_S2_contig9844:1963..2098Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9844 1964..2098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.9958274-CDS-E_fasciculatus_S2_contig9844:1282..19631696842627.9958274-CDS-E_fasciculatus_S2_contig9844:1282..1963Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9844 1283..1963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9844.17850.1prot_E_fasciculatus_S2_contig9844.17850.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9844 1283..1963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9844.17850.1

>prot_E_fasciculatus_S2_contig9844.17850.1 ID=prot_E_fasciculatus_S2_contig9844.17850.1|Name=mRNA_E_fasciculatus_S2_contig9844.17850.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=227bp
MCRACRSISILDVRVSSQTPGSFWFPRITQTRPSTRSSKLGVSSRVPVVR
ALRLTWTLSTETLLRTAATELWMSSECLWLDGPLGAASLGSAVWWPRGLT
QLVLYTDLDIPIENVLWPVRLQCLELRGRFNQPITGAVWPAFLRKVSFGM
RFNQPIAGVVWPASVQQLSFLYMFNHPIAGVLSAKVVVQGSVRSMQAANC
CIPVEEKANIYTGSRQQGFASSWRSM*
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mRNA from alignment at E_fasciculatus_S2_contig9844:706..2098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9844.17850.1 ID=mRNA_E_fasciculatus_S2_contig9844.17850.1|Name=mRNA_E_fasciculatus_S2_contig9844.17850.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9844:706..2098+ (Ectocarpus fasciculatus EfasUO2)
AGAATGAAGTCGAAACATGGCCATCGTCGACCAAGCGGCCTGTTTGGGAC CTGGAAGGCCGGCTGTATGGAACGCGTAAGTTCAACCCAAAGTGATTCTG GGAGCTCTCTCGGTGGCCTGGCAATAAATGTTCATCGCTTTCTCCCTTAT GACGTTCTATCCCCCATGGGAGCTAATCTCTCTTCGTGCACCGTCAAGAA ATTATGCTTTCGTTTATGCTGTCGGCAGCACGATTCACAAGGTTTCGGTA TCTCTTCTACTTCGGATCCAGTTGTCGTTGGCGCGTTTCCGAAAACAACC AAATGCTTGTTCATAGCAAATGGGAGCAGGGCAGCTGTTCCGTCCTATGT TTGTCCCTGCCTGATCGATGTTGCAAATTATTGTATCAGTGCAAAATCTG TCGATGGTATTCGATCATTCTTGCTGAAAATATGTCTTCGGTTTTGATCG GCGCTGATTGTTTCTAGGGCAAACCAGGTACCTCGATGCCTTCGTCGTGG CTTTGAGCCAGGCATGCAAGGGAGGACGGAAGCGCTGGTATGCGTCGACA CTGGAGCTGAAACTAACCTCGTTGGATATGTGCAGGGCGTGCCGAAGCAT CTCGATCTTGGACGTGCGTGTATCTAGTCAGACTCCTGGAAGCTTCTGGT TTCCTCGCATAACACAGACCCGGCCGAGCACACGCAGTTCGAAGCTTGGT GTCTCGAGCCGTGTGCCGGTCGTGCGGGCTCTTCGTTTGACATGGACACT TTCCACAGAAACTCTGCTGCGGACAGCCGCCACCGAGCTGTGGATGAGTT CAGAATGTCTCTGGCTGGATGGACCGTTAGGTGCGGCTAGCCTAGGATCA GCGGTTTGGTGGCCCCGAGGACTGACACAGCTTGTGTTGTACACAGATTT GGATATTCCAATCGAGAATGTGTTGTGGCCCGTACGATTGCAGTGTCTGG AACTTAGGGGTCGTTTCAATCAGCCTATTACTGGAGCCGTGTGGCCGGCG TTCCTACGGAAAGTGTCGTTCGGGATGCGATTCAATCAGCCTATAGCGGG AGTCGTGTGGCCGGCGTCGGTGCAACAGCTATCATTCTTGTACATGTTCA ATCACCCGATTGCCGGAGTCCTGTCTGCGAAAGTTGTCGTTCAAGGCAGC GTTCGATCAATGCAAGCAGCTAACTGCTGTATTCCTGTTGAAGAAAAGGC CAATATATACACCGGGAGTCGACAACAAGGGTTTGCATCCAGCTGGCGAA GCATGTAGAGAGCCAACCAGAACACCCTGCACCAACCACTTTTGGTGGCA TGGTTCACCAGCTAGCTCAATCACGTTTCCGAAAAGTGGCACTCATTAGG AAGACCGGAGACCGTCCCTCCCACCCAACTTCAATAAGGCCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9844:706..2098+

>mRNA_E_fasciculatus_S2_contig9844.17850.1 ID=mRNA_E_fasciculatus_S2_contig9844.17850.1|Name=mRNA_E_fasciculatus_S2_contig9844.17850.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=681bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9844:706..2098+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCAGGGCGTGCCGAAGCATCTCGATCTTGGACGTGCGTGTATCTAG
TCAGACTCCTGGAAGCTTCTGGTTTCCTCGCATAACACAGACCCGGCCGA
GCACACGCAGTTCGAAGCTTGGTGTCTCGAGCCGTGTGCCGGTCGTGCGG
GCTCTTCGTTTGACATGGACACTTTCCACAGAAACTCTGCTGCGGACAGC
CGCCACCGAGCTGTGGATGAGTTCAGAATGTCTCTGGCTGGATGGACCGT
TAGGTGCGGCTAGCCTAGGATCAGCGGTTTGGTGGCCCCGAGGACTGACA
CAGCTTGTGTTGTACACAGATTTGGATATTCCAATCGAGAATGTGTTGTG
GCCCGTACGATTGCAGTGTCTGGAACTTAGGGGTCGTTTCAATCAGCCTA
TTACTGGAGCCGTGTGGCCGGCGTTCCTACGGAAAGTGTCGTTCGGGATG
CGATTCAATCAGCCTATAGCGGGAGTCGTGTGGCCGGCGTCGGTGCAACA
GCTATCATTCTTGTACATGTTCAATCACCCGATTGCCGGAGTCCTGTCTG
CGAAAGTTGTCGTTCAAGGCAGCGTTCGATCAATGCAAGCAGCTAACTGC
TGTATTCCTGTTGAAGAAAAGGCCAATATATACACCGGGAGTCGACAACA
AGGGTTTGCATCCAGCTGGCGAAGCATGTAG
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