mRNA_E_fasciculatus_S2_contig9827.17832.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9827.17832.1
Unique Name	mRNA_E_fasciculatus_S2_contig9827.17832.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7B9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.400e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1

Query:   13 KLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144
            +LVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRK M
Sbjct:   47 ELVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKAM 90

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: UPF0559 (protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAW8_POLPP)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-9
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1

Query:    1 TDGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144
            +D  KLVMNYLV+EGY++AA+ F +ESGT + VDL TIE+R+AIR  +
Sbjct:   56 SDLNKLVMNYLVIEGYKEAADMFQKESGTKSSVDLHTIEDRMAIRSAI 103

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Tenascin (X n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A818_9MYCE)

HSP 1 Score: 59.3 bits (142), Expect = 5.330e-9
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1

Query:    1 TDGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144
            +D  KLVMNYLV+EGY++AAE F +ESGT + VDL +I +R+AIR  +
Sbjct:  705 SDLNKLVMNYLVIEGYQEAAEKFQQESGTQSMVDLNSIADRMAIRSAI 752

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WCM2_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 5.700e-9
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1

Query:    1 TDGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIR 135
            +D  +L+MNYL++EGY+DAAE F EESG   +VDL +IEER+ IR
Sbjct:   29 SDLNQLIMNYLIIEGYKDAAEKFSEESGLQTQVDLGSIEERMQIR 73

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: LisH (dimerization motif n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QRU0_9MAGN)

HSP 1 Score: 58.9 bits (141), Expect = 6.440e-9
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1

Query:    4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144
            D  KLVMNYLV EGY +AAE F  ESGT+  VDL TI ER+A++K +
Sbjct:  109 DMNKLVMNYLVTEGYVEAAERFKMESGTEPHVDLATITERMAVKKAL 155

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Phosphatidylserine (decarboxylase proenzyme 1, mitochondrial n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F2M4_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 7.280e-9
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1

Query:    4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIR 135
            D  KL+MNYLV+EGY+DA E F EESG    VDL +IEER+ IR
Sbjct:  396 DLNKLIMNYLVIEGYKDAVEKFAEESGLSPNVDLDSIEERMKIR 439

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: LisH (and RanBPM domains containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MIU6_ARTAN)

HSP 1 Score: 58.2 bits (139), Expect = 7.790e-9
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1

Query:    4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144
            D  KLVMN+LV EGY DAAE F +ESGT+ ++DL TI +R+A++K +
Sbjct:   27 DMNKLVMNFLVTEGYVDAAEKFRKESGTEPEIDLATITDRMAVKKAV 73

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HES9_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 8.980e-9
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1

Query:   13 KLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144
            +LVMN+LV+EGY++AA+ F+ ESGTDA VDL T+ +R+AIR  +
Sbjct:   49 RLVMNWLVIEGYQEAAQRFMAESGTDAGVDLDTVSDRMAIRNAV 92

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Uncharacterized (protein n=2 Tax=Quercus TaxID=3511 RepID=A0A7N2LNJ6_QUELO)

HSP 1 Score: 55.8 bits (133), Expect = 9.880e-9
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1

Query:    4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144
            D  KLVMN+LV EGY DAAE F  ESGT+  +DL TI +R+A++K +
Sbjct:   42 DMNKLVMNFLVTEGYVDAAEKFRLESGTEPDIDLATITDRMAVKKAV 88

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Uncharacterized (protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6B0_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.050e-8
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1

Query:    4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144
            D  KLVMNYLV+EGY+DAAE F +E G    +DLT+IE+R+ IR  +
Sbjct:   28 DLNKLVMNYLVIEGYKDAAEKFSQECGLSPNIDLTSIEDRMNIRNAV 74

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	1.400e-18	95.45	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5...	[more]
UPF0559	1.010e-9	60.42	protein n=1 Tax=Polysphondylium pallidum (strain A...	[more]
Tenascin	5.330e-9	58.33	X n=1 Tax=Tieghemostelium lacteum TaxID=361077 Rep...	[more]
Uncharacterized	5.700e-9	60.00	protein n=1 Tax=Linderina pennispora TaxID=61395 R...	[more]
LisH	6.440e-9	61.70	dimerization motif n=1 Tax=Macleaya cordata TaxID=...	[more]
Phosphatidylserine	7.280e-9	63.64	decarboxylase proenzyme 1, mitochondrial n=1 Tax=C...	[more]
LisH	7.790e-9	57.45	and RanBPM domains containing protein n=1 Tax=Arte...	[more]
Hypothetical	8.980e-9	59.09	protein n=1 Tax=Phaeocystis antarctica TaxID=33657...	[more]
Uncharacterized	9.880e-9	57.45	protein n=2 Tax=Quercus TaxID=3511 RepID=A0A7N2LNJ...	[more]
Uncharacterized	1.050e-8	57.45	protein n=2 Tax=Basidiobolus meristosporus CBS 931...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9827	contig	E_fasciculatus_S2_contig9827:304..450 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	81.3
Seed ortholog evalue	1.2e-13
Seed eggNOG ortholog	2880.D7G2A7
Preferred name	GID8
Model size	147
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010564,GO:0010675,GO:0010677,GO:0010906,GO:0019222,GO:0019538,GO:0019941,GO:0030054,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045721,GO:0045787,GO:0045912,GO:0045931,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0062012,GO:0062014,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090068,GO:1900087,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:2000045
Exons	1
EggNOG free text desc.	negative regulation of gluconeogenesis
EggNOG OGs	KOG2659@1,KOG2659@2759
Cds size	126
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842626.4427302-CDS-E_fasciculatus_S2_contig9827:303..429	1696842626.4427302-CDS-E_fasciculatus_S2_contig9827:303..429	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9827 304..429 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842626.455223-UTR-E_fasciculatus_S2_contig9827:429..450	1696842626.455223-UTR-E_fasciculatus_S2_contig9827:429..450	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig9827 430..450 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9827.17832.1	prot_E_fasciculatus_S2_contig9827.17832.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9827 304..429 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9827:304..450-
coding sequence from alignment at E_fasciculatus_S2_contig9827:304..450-

protein sequence of mRNA_E_fasciculatus_S2_contig9827.17832.1

>prot_E_fasciculatus_S2_contig9827.17832.1 ID=prot_E_fasciculatus_S2_contig9827.17832.1|Name=mRNA_E_fasciculatus_S2_contig9827.17832.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=42bp
MNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM*

mRNA from alignment at E_fasciculatus_S2_contig9827:304..450-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9827.17832.1 ID=mRNA_E_fasciculatus_S2_contig9827.17832.1|Name=mRNA_E_fasciculatus_S2_contig9827.17832.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=147bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9827:304..450- (Ectocarpus fasciculatus EfasUO2)
ACGGACGGACGGAAGCTGGTGATGAACTACCTGGTCGTGGAGGGCTACCG
GGATGCCGCGGAGCACTTCGTGGAAGAGTCCGGGACGGACGCCAAGGTGG
ACCTCACCACCATTGAGGAAAGGGTGGCGATAAGGAAGGTGATGTGA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9827:304..450-

>mRNA_E_fasciculatus_S2_contig9827.17832.1 ID=mRNA_E_fasciculatus_S2_contig9827.17832.1|Name=mRNA_E_fasciculatus_S2_contig9827.17832.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9827:304..450- (Ectocarpus fasciculatus EfasUO2)
ATGAACTACCTGGTCGTGGAGGGCTACCGGGATGCCGCGGAGCACTTCGT
GGAAGAGTCCGGGACGGACGCCAAGGTGGACCTCACCACCATTGAGGAAA
GGGTGGCGATAAGGAAGGTGATGTGA