mRNA_E_fasciculatus_S2_contig9827.17832.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7B9_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.400e-18 Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 Query: 13 KLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144 +LVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRK M Sbjct: 47 ELVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKAM 90
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: UPF0559 (protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAW8_POLPP) HSP 1 Score: 60.8 bits (146), Expect = 1.010e-9 Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 Query: 1 TDGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144 +D KLVMNYLV+EGY++AA+ F +ESGT + VDL TIE+R+AIR + Sbjct: 56 SDLNKLVMNYLVIEGYKEAADMFQKESGTKSSVDLHTIEDRMAIRSAI 103
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Tenascin (X n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A818_9MYCE) HSP 1 Score: 59.3 bits (142), Expect = 5.330e-9 Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 Query: 1 TDGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144 +D KLVMNYLV+EGY++AAE F +ESGT + VDL +I +R+AIR + Sbjct: 705 SDLNKLVMNYLVIEGYQEAAEKFQQESGTQSMVDLNSIADRMAIRSAI 752
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WCM2_9FUNG) HSP 1 Score: 58.5 bits (140), Expect = 5.700e-9 Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 Query: 1 TDGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIR 135 +D +L+MNYL++EGY+DAAE F EESG +VDL +IEER+ IR Sbjct: 29 SDLNQLIMNYLIIEGYKDAAEKFSEESGLQTQVDLGSIEERMQIR 73
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: LisH (dimerization motif n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QRU0_9MAGN) HSP 1 Score: 58.9 bits (141), Expect = 6.440e-9 Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 Query: 4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144 D KLVMNYLV EGY +AAE F ESGT+ VDL TI ER+A++K + Sbjct: 109 DMNKLVMNYLVTEGYVEAAERFKMESGTEPHVDLATITERMAVKKAL 155
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Phosphatidylserine (decarboxylase proenzyme 1, mitochondrial n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F2M4_9FUNG) HSP 1 Score: 58.9 bits (141), Expect = 7.280e-9 Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 Query: 4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIR 135 D KL+MNYLV+EGY+DA E F EESG VDL +IEER+ IR Sbjct: 396 DLNKLIMNYLVIEGYKDAVEKFAEESGLSPNVDLDSIEERMKIR 439
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: LisH (and RanBPM domains containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MIU6_ARTAN) HSP 1 Score: 58.2 bits (139), Expect = 7.790e-9 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1 Query: 4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144 D KLVMN+LV EGY DAAE F +ESGT+ ++DL TI +R+A++K + Sbjct: 27 DMNKLVMNFLVTEGYVDAAEKFRKESGTEPEIDLATITDRMAVKKAV 73
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HES9_9EUKA) HSP 1 Score: 58.5 bits (140), Expect = 8.980e-9 Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 13 KLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144 +LVMN+LV+EGY++AA+ F+ ESGTDA VDL T+ +R+AIR + Sbjct: 49 RLVMNWLVIEGYQEAAQRFMAESGTDAGVDLDTVSDRMAIRNAV 92
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Uncharacterized (protein n=2 Tax=Quercus TaxID=3511 RepID=A0A7N2LNJ6_QUELO) HSP 1 Score: 55.8 bits (133), Expect = 9.880e-9 Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 Query: 4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144 D KLVMN+LV EGY DAAE F ESGT+ +DL TI +R+A++K + Sbjct: 42 DMNKLVMNFLVTEGYVDAAEKFRLESGTEPDIDLATITDRMAVKKAV 88
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Match: Uncharacterized (protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6B0_9FUNG) HSP 1 Score: 57.8 bits (138), Expect = 1.050e-8 Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 Query: 4 DGRKLVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM 144 D KLVMNYLV+EGY+DAAE F +E G +DLT+IE+R+ IR + Sbjct: 28 DLNKLVMNYLVIEGYKDAAEKFSQECGLSPNIDLTSIEDRMNIRNAV 74 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9827.17832.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9827.17832.1 >prot_E_fasciculatus_S2_contig9827.17832.1 ID=prot_E_fasciculatus_S2_contig9827.17832.1|Name=mRNA_E_fasciculatus_S2_contig9827.17832.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=42bp MNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKVM*back to top mRNA from alignment at E_fasciculatus_S2_contig9827:304..450- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9827.17832.1 ID=mRNA_E_fasciculatus_S2_contig9827.17832.1|Name=mRNA_E_fasciculatus_S2_contig9827.17832.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=147bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9827:304..450- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9827:304..450- >mRNA_E_fasciculatus_S2_contig9827.17832.1 ID=mRNA_E_fasciculatus_S2_contig9827.17832.1|Name=mRNA_E_fasciculatus_S2_contig9827.17832.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9827:304..450- (Ectocarpus fasciculatus EfasUO2)back to top |