Homology
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY66_ECTSI)
HSP 1 Score: 565 bits (1455), Expect = 6.630e-201
Identity = 295/300 (98.33%), Postives = 295/300 (98.33%), Query Frame = 1
Query: 37 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMDMDEXXXXXXXXGQDGRHTMEE 936
SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMD XXXXXXXX DGRHTMEE
Sbjct: 109 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMDXXXXXXXXXXXXXDGRHTMEE 408
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH0_9PHAE)
HSP 1 Score: 469 bits (1206), Expect = 5.860e-165
Identity = 239/257 (93.00%), Postives = 245/257 (95.33%), Query Frame = 1
Query: 37 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQI 807
SDEVIFSCRLDNA+SITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFG GSLAQTSVSMAYQEARATFRLTLE GGVFTSCEIRTIHQDEEAM+FSTLAKAFGRSKEVCRCILK E AFQELADLNGATSVSVTFGQEA HLQL AKGSNGSSEIDFPKSS++ VCFECTAR VSW +LMTGMETGMRALGHANETYFRVNEEGILCIQHQ+
Sbjct: 30 SDEVIFSCRLDNAESITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGRGSLAQTSVSMAYQEARATFRLTLEGGGVFTSCEIRTIHQDEEAMKFSTLAKAFGRSKEVCRCILKGE----AFQELADLNGATSVSVTFGQEATHLQLYAKGSNGSSEIDFPKSSQSLVCFECTARGVSWAFLMTGMETGMRALGHANETYFRVNEEGILCIQHQV 282
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Repair (protein Rad1/Rec1/Rad17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW5_9STRA)
HSP 1 Score: 324 bits (831), Expect = 5.020e-107
Identity = 160/278 (57.55%), Postives = 208/278 (74.82%), Query Frame = 1
Query: 49 IFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVE-GAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMDMD 879
+FSCR+DNA+++TT+LSCLSHG+RK Q AQCE T E +T V++G+AK+TQAQG+L LFQ Y+C E G +FGINL+ LLECLQIFG A S ++AY ATF++TLEE GVFTSCE+RT+ ++ +AMEF+ LA AF S E CRCI++SE LKEAFQELADL GA S+ Q APHL+LS GS GSS I FP+SSEAFV F CT + W+Y ++ +E GMRAL A ET+ R+NEEGI+CIQHQ+ ++ G ++VD L+C + ++D D
Sbjct: 35 LFSCRIDNARAVTTVLSCLSHGSRKAQHAQCEATPEGLTFVITGKAKFTQAQGALSKDLFQAYECEEDGGRFGINLSMLLECLQIFGMN--ASASAALAYYPGTATFKVTLEENGVFTSCELRTLVEESDAMEFAALAAAFRSSPEECRCIIRSETLKEAFQELADLPGAASIVFEASQHAPHLKLSTSGSYGSSSIQFPRSSEAFVHFSCTPPSLRWSYALSALEGGMRALPFAQETFVRINEEGIMCIQHQVQVA-GHNTYVDFLICANTADIDDD 309
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ4_9PHAE)
HSP 1 Score: 318 bits (816), Expect = 4.420e-106
Identity = 174/215 (80.93%), Postives = 180/215 (83.72%), Query Frame = 1
Query: 37 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECT 681
SDEVIFSCRLDNA+SITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQE+ G E++ + EAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEA HLQLSAKGSNGS P SS C+
Sbjct: 30 SDEVIFSCRLDNAESITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQESDVPPHPGRGRG----VHELQDKNHPPEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEATHLQLSAKGSNGSRYAMAPPSSHGAPGSRCS 240
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMN7_9STRA)
HSP 1 Score: 261 bits (668), Expect = 6.230e-83
Identity = 136/271 (50.18%), Postives = 183/271 (67.53%), Query Frame = 1
Query: 40 DEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCV-EGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMG-QTSFVDVL 846
+E +FSCR+D+ K IT L+CLS G+RKDQ AQ EV E + +V+GRAK+TQ+QG+ + +LFQ + C EG F I+L LLECLQ+FG SL T ++M+Y+ +A RLTLEE GV T+CE+R + E+A + + LA AF EV R ILKS++LKEA EL+DL GA SV V+ P+ L+ G G EI PKSSEAFV F+C+ R SW+Y + + GMRAL A ETY R+NEEGI+C+QHQ+ + Q++F+D L
Sbjct: 14 EEPLFSCRIDSTKIITATLACLSDGSRKDQLAQVEVNNEGIVFIVTGRAKFTQSQGTFNRALFQAFQCQPEGGSFTIDLHLLLECLQVFGAASLTNTMLTMSYEPRKAALRLTLEEQGVLTTCEVRALEAGEDAFDLAALASAFRSRPEVLRAILKSDVLKEAISELSDLPGAGSVRVSVAPHEPNFHLATNGICGGLEIFLPKSSEAFVHFDCSEAR-SWSYGLGALNQGMRALTVAKETYVRINEEGIMCVQHQVENTASRQSTFIDFL 283
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVI5_9STRA)
HSP 1 Score: 238 bits (608), Expect = 8.160e-74
Identity = 128/278 (46.04%), Postives = 181/278 (65.11%), Query Frame = 1
Query: 49 IFSCRLDNAKSITTILSCLSHGT-RKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIH---QDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCP-DIQE 867
+FSCRL++AK + ++SCL+H RK+ A C+V + + ++ RAK Q G+L +F ++C E F +NL +L+CL +FGP +++ T+++M Y + A F+LT+EE GVFT C+I+T+ QDE+ EFS L +F R E C+ ILKSE LKEA EL DL+GA+ V V APH QL+A G+ G+ EI+FPKSSE FV F C+ + +TY + + GMRAL A ET R+N GI+CIQHQ+ G TSFVD L+CP D+Q+
Sbjct: 19 LFSCRLESAKELHALVSCLAHEKKRKEHIALCQVNDQGLNFSMNQRAKTIQVSGTLPRRVFSSFECHEHGAFCLNLGMVLDCLSLFGPAAISSTAIAMTYSKEDAVFQLTMEEHGVFTRCDIQTLDGSAQDED--EFSQLTSSFRRDPEACKLILKSEFLKEALYELQDLSGASFVDVFISPTAPHFQLAATGNLGTLEIEFPKSSELFVLFSCS-EALRFTYRLEALIRGMRALLVAAETCVRINVVGIMCIQHQVQNHSGVTSFVDFLMCPADLQD 293
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8B6_9STRA)
HSP 1 Score: 209 bits (532), Expect = 8.130e-63
Identity = 112/268 (41.79%), Postives = 161/268 (60.07%), Query Frame = 1
Query: 82 ITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVE-GAKFGINLTTLLECLQIFGPGSLAQTS--VSMAYQEARATFRLTLEEGGVFTSCEIRTIHQD---EEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQE 867
I ++L C+ +GTRKDQ AQC+V ++ + R++ TQ G++D + F E++C + G F IN+ TLL+CL IFGP S V+M++ + L L+E GVFT C+I+ I D E F+ + F + C+CI+KSE LKEA EL DLN AT +SV +APH Q+SA+GS G +I+FP+SS+ F FECT + Y GMRAL + E+YFR+NE G+LCIQH + G F+D ++ P+I +
Sbjct: 1 IQSMLQCIVNGTRKDQHAQCQVHAGGISFSLQSRSRTTQVTGTMDKNCFTEFECYDDGGTFCINICTLLDCLSIFGPQQAGTNSTVVTMSFDKNLCQLILNLDEDGVFTRCDIQAIENDGDEEVGARFAQFSDEFRQKPSPCKCIVKSEQLKEALNELRDLNNATRLSVLLSPQAPHFQISAQGSLGFLDIEFPRSSDLFELFECT-ETMKTEYDYDSFVQGMRALTVSEESYFRINEGGLLCIQHHVETHGGGRCFIDFIMLPNIAD 267
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDK7_9STRA)
HSP 1 Score: 166 bits (420), Expect = 1.690e-46
Identity = 88/222 (39.64%), Postives = 135/222 (60.81%), Query Frame = 1
Query: 205 GSLDSSLFQ---EYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDI 861
G D +F+ E+D E + INLTT ++CL +FG SL T+ ++ Y A +L+LE+ G+ T+C+I T++ D L AF S E+C+ ILKSEILKEA +L+D+ GAT+V++ + +L G+ G EI+FP+ S+ FV F C + WTY +T ++ GM+AL + ET+ R+NEEG++CIQHQI + G ++D L+ D+
Sbjct: 5 GYFDDYIFKPINEHDNDERIRIFINLTTFVDCLLLFG-SSLETTAGTITYNSDDALLKLSLEDSGILTTCDISTLYMDNNEDIGYELFSAFLSSNELCQVILKSEILKEAMHDLSDVYGATTVAIEITKNPENLTFMTVGTMGECEIEFPRLSDLFVSFRCD-KSSKWTYPLTSLQLGMKALNISKETFIRMNEEGVICIQHQIETNRGHEIYIDYLMVSDV 224
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J7_PYTOL)
HSP 1 Score: 158 bits (399), Expect = 3.600e-42
Identity = 99/304 (32.57%), Postives = 155/304 (50.99%), Query Frame = 1
Query: 40 DEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQ--EYDCVEGAK----------------FGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTF-----GQEAPH--LQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVS------WTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 858
++ + C ++ K + T+LSCL G +KDQ+ +C++ M + K Q + SL S LF E+ E ++ F +NL+ L+E L +FGP SL +S+ ++Y A L +E+ GV C ++ + + + AF +S + RCI++SE L +AF EL DL A SV++ G + H L LSA GS EI+F +SS AF+ F CT S T+ + ++ +ALGH+NET+ R+N +G L +QH I G +FVD L+ P+
Sbjct: 42 EKPVLVCTSESVKLLVTLLSCLFQG-KKDQRIRCDIDSAGMLFTSHSKGKSLQIKTSLGSELFDTFEFRASETSQLDHDDEDDSQLDTQYSFALNLSALIESLSMFGPASLPTSSLRLSYFAESARLTLLVEDNGVICECAMQVLELESNDIAQLEFESAFEQSAVIGRCIMQSEPLHDAFAELYDLPSAASVAIAMYEDDEGPASSHKCLSLSATSETGSCEIEFARSSSAFIEFFCTNDETSDDGSASATFHVAVLQQAFKALGHSNETFLRMNADGFLSVQHMIESGSGDKAFVDALISPE 344
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C542_PYTIN)
HSP 1 Score: 147 bits (371), Expect = 1.440e-38
Identity = 95/295 (32.20%), Postives = 149/295 (50.51%), Query Frame = 1
Query: 82 ITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGA-------------KFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTF---GQE----APH------------LQLSAKGSNGSSEIDFPKSSEAFVCFECTA----RRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 858
+ T+LSCL G +KDQ+ +C+V M R K Q + L + LF+ Y+ E F +NL L+E L +FG +LA +S+ ++Y AT L +E+ GV C ++ + + M AF +S + RCI++SE L++AF EL DL A V+++ G E + H L LSA+ GS EI+F +SS AF+ F C + + T+ + ++ +AL H+NET+ R+N +G L +QH I G+ +FVD L+ P+
Sbjct: 1 MVTLLSCLFQG-KKDQRVRCDVDNAGMLFTAHSRGKSLQIKTXLGAXLFESYEFREPDDTNGDGDGLDTQHSFALNLNALIESLSMFGSSALATSSLRLSYFPQTATLTLVVEDNGVICECAMQVLELEGNDMSQLEFESAFEQSAVLGRCIIQSEPLQDAFAELYDLPSAACVTISMFPDGDENQIDSDHRRRSVAHAQGRCLSLSAQSETGSCEIEFARSSAAFIEFFCASSGDNEPCAATFHVAVLQQAFKALAHSNETFLRMNADGFLSVQHMIETGTGERAFVDALVSPE 294
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90 )
Total hits: 25
0 1 Expect = 6.63e-201 / Id = 98.33 Expect = 5.86e-165 / Id = 93.00 Expect = 5.02e-107 / Id = 57.55 Expect = 4.42e-106 / Id = 80.93 Expect = 6.23e-83 / Id = 50.18 Expect = 8.16e-74 / Id = 46.04 Expect = 8.13e-63 / Id = 41.79 Expect = 1.69e-46 / Id = 39.64 Expect = 3.60e-42 / Id = 32.57 Expect = 1.44e-38 / Id = 32.20 Sequence Uncharacterized Uncharacterized Repair Uncharacterized Uncharacterized Hypothetical Hypothetical Hypothetical Uncharacterized Uncharacterized
Match Name E-value Identity Description
Uncharacterized 6.630e-201 98.33 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more] Uncharacterized 5.860e-165 93.00 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more] Repair 5.020e-107 57.55 protein Rad1/Rec1/Rad17-domain-containing protein ... [more] Uncharacterized 4.420e-106 80.93 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more] Uncharacterized 6.230e-83 50.18 protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more] Hypothetical 8.160e-74 46.04 protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more] Hypothetical 8.130e-63 41.79 protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more] Hypothetical 1.690e-46 39.64 protein (Fragment) n=2 Tax=Chromulina nebulosa Tax... [more] Uncharacterized 3.600e-42 32.57 protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more] Uncharacterized 1.440e-38 32.20 protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 0 Seed ortholog score 568.2 Seed ortholog evalue 2.4e-159 Seed eggNOG ortholog 2880.D7FY66 Preferred name RAD1 Model size 939 KEGG ko ko:K02830,ko:K05665 KEGG TC 3.A.1.208.8 KEGG Pathway ko01523,ko02010,ko04071,ko04111,ko04113,ko04218,ko04977,ko05206,map01523,map02010,map04071,map04111,map04113,map04218,map04977,map05206 Hectar predicted targeting category other localisation GOs GO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022414,GO:0023052,GO:0030896,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035825,GO:0035861,GO:0040020,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0097190,GO:0097193,GO:0104004,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000241,GO:2000242 Exons 7 EggNOG free text desc. exodeoxyribonuclease III activity EggNOG OGs KOG3194@1,KOG3194@2759 Ec32 ortholog description Rad1/Rec1/Rad17 Ec32 ortholog Ec-24_003630.1 EC 3.1.11.2 Cds size 939 COG Functional cat. V Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko01000,ko02000,ko03400
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1696842626.2205248-CDS-E_fasciculatus_S2_contig9822:946..1081 1696842626.2205248-CDS-E_fasciculatus_S2_contig9822:946..1081 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9822 947..1081 - 1696842626.237954-CDS-E_fasciculatus_S2_contig9822:1966..2141 1696842626.237954-CDS-E_fasciculatus_S2_contig9822:1966..2141 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9822 1967..2141 - 1696842626.2478538-CDS-E_fasciculatus_S2_contig9822:3099..3209 1696842626.2478538-CDS-E_fasciculatus_S2_contig9822:3099..3209 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9822 3100..3209 - 1696842626.267779-CDS-E_fasciculatus_S2_contig9822:3737..3830 1696842626.267779-CDS-E_fasciculatus_S2_contig9822:3737..3830 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9822 3738..3830 - 1696842626.2855692-CDS-E_fasciculatus_S2_contig9822:4074..4149 1696842626.2855692-CDS-E_fasciculatus_S2_contig9822:4074..4149 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9822 4075..4149 - 1696842626.2963383-CDS-E_fasciculatus_S2_contig9822:4725..4932 1696842626.2963383-CDS-E_fasciculatus_S2_contig9822:4725..4932 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9822 4726..4932 - 1696842626.3065798-CDS-E_fasciculatus_S2_contig9822:5544..5688 1696842626.3065798-CDS-E_fasciculatus_S2_contig9822:5544..5688 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9822 5545..5688 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9822.17829.1
>prot_E_fasciculatus_S2_contig9822.17829.1 ID=prot_E_fasciculatus_S2_contig9822.17829.1|Name=mRNA_E_fasciculatus_S2_contig9822.17829.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=313bp
GGGGGGQEEDEESDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVT back to top mRNA from alignment at E_fasciculatus_S2_contig9822:947..5688-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9822.17829.1 ID=mRNA_E_fasciculatus_S2_contig9822.17829.1|Name=mRNA_E_fasciculatus_S2_contig9822.17829.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4742bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9822:947..5688- (Ectocarpus fasciculatus EfasUO2)GGGGGGGGGGGGGGGGGGCAGGAGGAAGACGAGGAAAGCGACGAAGTCAT
CTTCTCGTGCCGGCTGGACAACGCCAAGTCGATCACCACCATCCTCTCCT
GCCTTAGCCACGGAACCCGCAAGGATCAGCAGGCCCAGTGCGAG GTGACC
TTTTTTTTGTTTTCCTGTGAGCGAGGGAGTTTTGTCTGTGGGCTTCGGCA
GACTGATTTTTTTCTTATCTTTGGTAGCTCAGCTCACATAACTTGCACAG
AGGGTATGTGCTGTACGGGCCCGGCGATCCTCGCTTTTCGCCGCTTGCTC
TGCAGAATATCGCCAAGTTTCATCCTCTGGAGTAGTAAGGCGGTGGTACG
TTCACCTGAGCTTGATAGCGATGTTTTCGTGTCTCGGGCTACGGTTCCTG
ACGCCAAACCATCGCGCTCCTCGTCGCGAGAGGAACAATTCTACAGGACC
TACGGCCTCCTCGGACCTTGAGGGGGGGGTACATCACCCGCGCTTAAGGT
CATCCCCACACGTCAAGGACTTGAAGATGGAGTGCTCCGAAGCGTACGGT
CATTTCTTTGACTTGCCAGCTCTCCTCTTGATGTTGCCACAGTCGGGTTG
TGATGATTTGTAATGTCGGGGGTGCTGGAACGAGATCTGAGTGTTTTGAA
CTTGGTACACCACAACTTCGACTACAACAACAAACAACGCGACAGCAACC
TACAAGGGCGATGTGCCATAACATAACCGAAGCAAACAACACAACAAAAT
GTACAGGTGACGAAGGAGTCGATGACCCTCGTGGTTTCGGGAAGAGCCAA
GTACACACAGGCGCAGGGGTCGCTAGACAGCAGCCTGTTCCAGGAGTACG
ACTGCGTAGAGGGCGCCAAGTTCGGCATCAACCTCACCACGCTGCTGGAG
TGCCTCCAGATCTTCGGCCCCGGGTCTCTCGCCCAGACGAGCGTCAGCAT
GGCGTACCAGGAG GTATATTTTCAGTAGCCTGCGCGAGGATATCAAAAGC
TTGGTATTTGGTAGTGGGGTTTGGGCTTGGTTTTCCATAGGGGGTTGGGG
GCTAGAGGTACGGTTTCGAACCTCCCTCTCCATTTCGTGGAATGATCCCC
AACCGTGGCGAAGGCGGTCCTACGAGCTTTGGAGTCGTGGATTGTTTTCG
TTTTCCCCGTGCTGTTGAAAGAGGGGGAGGGGTCGTGACCGCGCATCTTC
GTATTCTGCGGACAATCGATGCTTACGCGGCTGCGGATATTGGATGCTCG
CACCCTGGCGCGAAGGCGTTGCTCAACTTGTCGGGCGCGTGCAGCGACCA
GGCCGTCGTTTGCGCCGATTGCCAGTCGCCGTGATGCGCCCAGCGAAAGG
GCGAGCCGCATGAATCCCACAATATCAGCTCCTGCTGGGGCGGGCGGAAT
TGATTTCTTCACGCGTAATGCGGCGCGGGCCTACGGATAGAGCTCTCAAT
CTCGTGAAAAAGCATTTCCTATGTGTGTCGTCCCGAGGACCAACGTCACC
ATCACGCACTTTTGTTGGTCGTACGTTCTCCGCTGGAAGGCTAGAGCGAC
GTTCCGCCTTACCCTGGAAGAGGGCGGGGTGTTCACGAGCTGCGAGATAA
GGACCATCCACCAG GTACGGGTTGTAGGGTCAGTTTTGGCTTGCTCTCCA
GACGCTTATTTAATCGAACGCCATGAGAGAGCTCCGCTGTTTCGGGCGTC
CTTCCATTGTTATCCTGGCAACTGCAGCGTAACGTGCACAGCATCCTGCT
TGCGTACCTTTCCTTCAAGTCTGTTTTTCTCGCGTCCTTCTCCGCGTGGC
TTGCCTGAATTAATTTCTGTGTTGCCGTGTTTTGGTGCCATCGGTGATAC
GCACGCAGGACGAGGAAGCCATGGAGTTCTCAACACTGGCCAAGGCGTTC
GGCAGGAGCAAAGAGGTCTGCCGCTGCATCCTCAAGTCAGAAATTCTCAA
G GTGAGGCCGTATACACGAAGCCATTCACTTCGTCGTTCTTCGCGTGTTA
ATTACCTCACGCCGCTTCGCGCTTCGTGATGTGCTAGCCTGGCGAATACA
TCCGGCGTGCTCAGTCCCAGCTTTGTAGGGAGGTCGAAGTCAAATATTTT
ACAACTACGGCATGCACGGCTATGAGCACAACTCCCCCCCCGGCTTCTCT
GCGCTTGCCCCGTGTTTGTCGTGTCGAGAGAAGCGTTTAGCACGAGCCAC
TTGACGGTGGTCTGTCGTGCCAACGCATTCTCACTTGTTGTGGACACTCA
ACGGCACTTACTAATAGAACGGTGTTCAAGACCGACGTGTATAGAAAAAA
TGGAGATGGAAAAATAATATATATATATGAGACGAAGTTGCCCGTGTCGC
GGATAGGCCATGAATACACCCGTAGAGACCTGTCAACGCATTCCATTGAG
TTCAAAACTCCCCTCGTGACAACCGGCAAGCTTGTAGTCAACCACACACA
ATCGCACCCGCGGGACCCCCGGCCTTCAGGAAGCGTTTCAGGAGCTGGCC
GACTTGAACGGCGCCACGAGCGTGTCGGTGACCTTCGGGCAGGAGGCCCC
GCATCTGCAGCTCTCCGCCAAGGGCTCCAACGGTTCCAG GTACGCCACGG
CGCCCCGGAAGCGCTACCGAGCCGTGGTCCCGTCGTGTTTTGGGTCGTCT
TTTCTGTCGTTTTTTTTTTTTTTGCGGCACTGATTTCCGCGGAGCACCTC
TCCGCCTTGTGGCGTGTCCGTCTTCCCCCATGGTGACCTTGATGCCCCCC
CTGGGTTCTTGGAGTGAACACGGGGTACCGATGCGTGGAAGGACACCTAC
CCCACCTGATGCTTGCAGTGCAACATCAAATATTTACTCCGTATACATGT
CACCGCCACATTAGACTTTTTTCGTCGCCGCGCGCGAAGGCAGCGTTGCT
GTTGTGTCGTTGACATTGTGAAACCGTCATGACCTGTGCGGATAAGGACA
GGTCGACGACATGTGACCTTGATCCCACAGAGCACGGGACAGATTCTCAT
GGCCACGTGACAATCATCCCCCCAGAATCGATGGTTGCCGGATGTCCTTG
TCCGCTCTCTGTCTGCTTTTCTTTCTGTCTGTGCTTGCGACTCTCTGTCC
ATCTCTATCACTCTCACTCTCACCCTCGCACCCACACGCTCTCGCTCTGT
CTCTATATTTCTTCTCTCTCTATATATATACATGTATATCTATGTCGCGC
ACTCCCTTGCCCCTCTGCCTGGTCTCTTACTCACTCGCTCACTTTCTCTC
TCTGCCTCTCTATTGTTGAAGTCTGTACTGTGTAATATCTATCCCTGTCT
CGCGCGCTCCCTCCCCCGTCTCTCGGCCTTGCTTGCTCACCCAGTCACGT
TTTCTCTCTATAGCTCTATACCTCCCCGTATCTCTCTCTACCCCTATCTC
GTGCGCTCGCCCCCCCCCCCCTCTCTCTCTGTTCGATTTTCTCACTCCCT
CATTCTGTTGTTTCTCTAAAAATGTATAGGAGTATGTCTGCCGTGCTTTT
ACGTGTTTTTTCGTGCGTCGCACGACTTCTTCCTCCTCCTCCTTCAGCGA
GATCGACTTCCCCAAGAGCTCAGAGGCGTTCGTGTGCTTCGAATGCACCG
CGAGGAGGGTGTCGTGGACCTACCTCATGACCGGGATGGAGACCGGCATG
CGCGCCCTGGGGCACGCCAACGAAACCTACTTCAGAGTTAACGAGGAGGG
CATCCTCTGCATACAGCATCAG GTAACGTGACTTGATCGCTCTCCCTCTA
ATAGAGGACTGCTCTCGGTACAAAAGCTTTGCTGAAAGGTCGCCGTTGGT
GTGGAACACATCTGTCTTCGTGTGGGTCTGAAATGCTGACCACATCAGGA
TCAAAAGGAGACCAACCTAGGCATCTTGTTTTGAGGACAGCAACATTCAC
CATTTGGATAGCGTTGGGTCGATCTTGGAGCCGGAGCATCAGGTGACGTG
ACTTGGTCACGCCCTGCGGTAATAGTCAAGAAGGGGGGTTCAGCATCAGG
TGGGGCGACTTGATTGCTCTCTTTCGTTCTTGAGGCAACACGAGTCACGG
GCGGGCTTGACCTCATGAGGTGGCTTGATTGCCACGAGTCGGGGTGAATG
CGCAGAATGTTGAACACCTCGTTCTCACGCGAAGGGCACAGATTGTCGGG
GCGGGCAGGAAGGTGGGATAGGCTAAAACATATTTCTGGCATCCATTTGC
CAAGTGGGGACACTAATTTTTCGATTCTCCTGGCACATTGCTCGATTTTG
GCGCATGCGCTGGCACACAGATGTTGGCGCATGCGCTGGCACACAGCGAG
ACCTCCTGATGCAATAACGACGGTATACCCCTGATGTTTACAGCGGGGAG
AGAAAGAGTAGCGGAACTCGAAACATACGGAGTTCCATCAAGAGATGGGG
GAGGGCGTTGATTGGGTGCTCTGACTAGGGTGTTTATGTGTGCCTAAGTG
GGTTGGGACGGCCCATTATGCGACCTCCTCGGGGGGGGATATTCGGAACG
GAACCCCACCAACGCTCTAGCTGGGTGCCAGATGACTGTGGGGTATATCG
TTTCTCGCGCCAAACAGCAACACGTGTGCCCGCCGATCATTTTTTCATGA
CGCGTAGATCCCCATGAGCATGGGGCAGACCAGCTTCGTGGACGTGTTGC
TGTGCCCGGACATACAAGAAATGGACATGGACGAGCAGGAGGAAGAGGAG
GAGGAGGAAGGTCAAGACGGGAGACATACGATGGAAGAGTAG back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9822:947..5688-
>mRNA_E_fasciculatus_S2_contig9822.17829.1 ID=mRNA_E_fasciculatus_S2_contig9822.17829.1|Name=mRNA_E_fasciculatus_S2_contig9822.17829.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=939bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9822:947..5688- (Ectocarpus fasciculatus EfasUO2) back to top