mRNA_E_fasciculatus_S2_contig9822.17829.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY66_ECTSI) HSP 1 Score: 565 bits (1455), Expect = 6.630e-201 Identity = 295/300 (98.33%), Postives = 295/300 (98.33%), Query Frame = 1 Query: 37 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMDMDEXXXXXXXXGQDGRHTMEE 936 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMD XXXXXXXX DGRHTMEE Sbjct: 109 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMDXXXXXXXXXXXXXDGRHTMEE 408
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH0_9PHAE) HSP 1 Score: 469 bits (1206), Expect = 5.860e-165 Identity = 239/257 (93.00%), Postives = 245/257 (95.33%), Query Frame = 1 Query: 37 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQI 807 SDEVIFSCRLDNA+SITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFG GSLAQTSVSMAYQEARATFRLTLE GGVFTSCEIRTIHQDEEAM+FSTLAKAFGRSKEVCRCILK E AFQELADLNGATSVSVTFGQEA HLQL AKGSNGSSEIDFPKSS++ VCFECTAR VSW +LMTGMETGMRALGHANETYFRVNEEGILCIQHQ+ Sbjct: 30 SDEVIFSCRLDNAESITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGRGSLAQTSVSMAYQEARATFRLTLEGGGVFTSCEIRTIHQDEEAMKFSTLAKAFGRSKEVCRCILKGE----AFQELADLNGATSVSVTFGQEATHLQLYAKGSNGSSEIDFPKSSQSLVCFECTARGVSWAFLMTGMETGMRALGHANETYFRVNEEGILCIQHQV 282
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Repair (protein Rad1/Rec1/Rad17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW5_9STRA) HSP 1 Score: 324 bits (831), Expect = 5.020e-107 Identity = 160/278 (57.55%), Postives = 208/278 (74.82%), Query Frame = 1 Query: 49 IFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVE-GAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMDMD 879 +FSCR+DNA+++TT+LSCLSHG+RK Q AQCE T E +T V++G+AK+TQAQG+L LFQ Y+C E G +FGINL+ LLECLQIFG A S ++AY ATF++TLEE GVFTSCE+RT+ ++ +AMEF+ LA AF S E CRCI++SE LKEAFQELADL GA S+ Q APHL+LS GS GSS I FP+SSEAFV F CT + W+Y ++ +E GMRAL A ET+ R+NEEGI+CIQHQ+ ++ G ++VD L+C + ++D D Sbjct: 35 LFSCRIDNARAVTTVLSCLSHGSRKAQHAQCEATPEGLTFVITGKAKFTQAQGALSKDLFQAYECEEDGGRFGINLSMLLECLQIFGMN--ASASAALAYYPGTATFKVTLEENGVFTSCELRTLVEESDAMEFAALAAAFRSSPEECRCIIRSETLKEAFQELADLPGAASIVFEASQHAPHLKLSTSGSYGSSSIQFPRSSEAFVHFSCTPPSLRWSYALSALEGGMRALPFAQETFVRINEEGIMCIQHQVQVA-GHNTYVDFLICANTADIDDD 309
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ4_9PHAE) HSP 1 Score: 318 bits (816), Expect = 4.420e-106 Identity = 174/215 (80.93%), Postives = 180/215 (83.72%), Query Frame = 1 Query: 37 SDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECT 681 SDEVIFSCRLDNA+SITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQE+ G E++ + EAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEA HLQLSAKGSNGS P SS C+ Sbjct: 30 SDEVIFSCRLDNAESITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQESDVPPHPGRGRG----VHELQDKNHPPEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEATHLQLSAKGSNGSRYAMAPPSSHGAPGSRCS 240
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMN7_9STRA) HSP 1 Score: 261 bits (668), Expect = 6.230e-83 Identity = 136/271 (50.18%), Postives = 183/271 (67.53%), Query Frame = 1 Query: 40 DEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCV-EGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMG-QTSFVDVL 846 +E +FSCR+D+ K IT L+CLS G+RKDQ AQ EV E + +V+GRAK+TQ+QG+ + +LFQ + C EG F I+L LLECLQ+FG SL T ++M+Y+ +A RLTLEE GV T+CE+R + E+A + + LA AF EV R ILKS++LKEA EL+DL GA SV V+ P+ L+ G G EI PKSSEAFV F+C+ R SW+Y + + GMRAL A ETY R+NEEGI+C+QHQ+ + Q++F+D L Sbjct: 14 EEPLFSCRIDSTKIITATLACLSDGSRKDQLAQVEVNNEGIVFIVTGRAKFTQSQGTFNRALFQAFQCQPEGGSFTIDLHLLLECLQVFGAASLTNTMLTMSYEPRKAALRLTLEEQGVLTTCEVRALEAGEDAFDLAALASAFRSRPEVLRAILKSDVLKEAISELSDLPGAGSVRVSVAPHEPNFHLATNGICGGLEIFLPKSSEAFVHFDCSEAR-SWSYGLGALNQGMRALTVAKETYVRINEEGIMCVQHQVENTASRQSTFIDFL 283
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVI5_9STRA) HSP 1 Score: 238 bits (608), Expect = 8.160e-74 Identity = 128/278 (46.04%), Postives = 181/278 (65.11%), Query Frame = 1 Query: 49 IFSCRLDNAKSITTILSCLSHGT-RKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIH---QDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCP-DIQE 867 +FSCRL++AK + ++SCL+H RK+ A C+V + + ++ RAK Q G+L +F ++C E F +NL +L+CL +FGP +++ T+++M Y + A F+LT+EE GVFT C+I+T+ QDE+ EFS L +F R E C+ ILKSE LKEA EL DL+GA+ V V APH QL+A G+ G+ EI+FPKSSE FV F C+ + +TY + + GMRAL A ET R+N GI+CIQHQ+ G TSFVD L+CP D+Q+ Sbjct: 19 LFSCRLESAKELHALVSCLAHEKKRKEHIALCQVNDQGLNFSMNQRAKTIQVSGTLPRRVFSSFECHEHGAFCLNLGMVLDCLSLFGPAAISSTAIAMTYSKEDAVFQLTMEEHGVFTRCDIQTLDGSAQDED--EFSQLTSSFRRDPEACKLILKSEFLKEALYELQDLSGASFVDVFISPTAPHFQLAATGNLGTLEIEFPKSSELFVLFSCS-EALRFTYRLEALIRGMRALLVAAETCVRINVVGIMCIQHQVQNHSGVTSFVDFLMCPADLQD 293
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8B6_9STRA) HSP 1 Score: 209 bits (532), Expect = 8.130e-63 Identity = 112/268 (41.79%), Postives = 161/268 (60.07%), Query Frame = 1 Query: 82 ITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVE-GAKFGINLTTLLECLQIFGPGSLAQTS--VSMAYQEARATFRLTLEEGGVFTSCEIRTIHQD---EEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQE 867 I ++L C+ +GTRKDQ AQC+V ++ + R++ TQ G++D + F E++C + G F IN+ TLL+CL IFGP S V+M++ + L L+E GVFT C+I+ I D E F+ + F + C+CI+KSE LKEA EL DLN AT +SV +APH Q+SA+GS G +I+FP+SS+ F FECT + Y GMRAL + E+YFR+NE G+LCIQH + G F+D ++ P+I + Sbjct: 1 IQSMLQCIVNGTRKDQHAQCQVHAGGISFSLQSRSRTTQVTGTMDKNCFTEFECYDDGGTFCINICTLLDCLSIFGPQQAGTNSTVVTMSFDKNLCQLILNLDEDGVFTRCDIQAIENDGDEEVGARFAQFSDEFRQKPSPCKCIVKSEQLKEALNELRDLNNATRLSVLLSPQAPHFQISAQGSLGFLDIEFPRSSDLFELFECT-ETMKTEYDYDSFVQGMRALTVSEESYFRINEGGLLCIQHHVETHGGGRCFIDFIMLPNIAD 267
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDK7_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.690e-46 Identity = 88/222 (39.64%), Postives = 135/222 (60.81%), Query Frame = 1 Query: 205 GSLDSSLFQ---EYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDI 861 G D +F+ E+D E + INLTT ++CL +FG SL T+ ++ Y A +L+LE+ G+ T+C+I T++ D L AF S E+C+ ILKSEILKEA +L+D+ GAT+V++ + +L G+ G EI+FP+ S+ FV F C + WTY +T ++ GM+AL + ET+ R+NEEG++CIQHQI + G ++D L+ D+ Sbjct: 5 GYFDDYIFKPINEHDNDERIRIFINLTTFVDCLLLFG-SSLETTAGTITYNSDDALLKLSLEDSGILTTCDISTLYMDNNEDIGYELFSAFLSSNELCQVILKSEILKEAMHDLSDVYGATTVAIEITKNPENLTFMTVGTMGECEIEFPRLSDLFVSFRCD-KSSKWTYPLTSLQLGMKALNISKETFIRMNEEGVICIQHQIETNRGHEIYIDYLMVSDV 224
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J7_PYTOL) HSP 1 Score: 158 bits (399), Expect = 3.600e-42 Identity = 99/304 (32.57%), Postives = 155/304 (50.99%), Query Frame = 1 Query: 40 DEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQ--EYDCVEGAK----------------FGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTF-----GQEAPH--LQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVS------WTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 858 ++ + C ++ K + T+LSCL G +KDQ+ +C++ M + K Q + SL S LF E+ E ++ F +NL+ L+E L +FGP SL +S+ ++Y A L +E+ GV C ++ + + + AF +S + RCI++SE L +AF EL DL A SV++ G + H L LSA GS EI+F +SS AF+ F CT S T+ + ++ +ALGH+NET+ R+N +G L +QH I G +FVD L+ P+ Sbjct: 42 EKPVLVCTSESVKLLVTLLSCLFQG-KKDQRIRCDIDSAGMLFTSHSKGKSLQIKTSLGSELFDTFEFRASETSQLDHDDEDDSQLDTQYSFALNLSALIESLSMFGPASLPTSSLRLSYFAESARLTLLVEDNGVICECAMQVLELESNDIAQLEFESAFEQSAVIGRCIMQSEPLHDAFAELYDLPSAASVAIAMYEDDEGPASSHKCLSLSATSETGSCEIEFARSSSAFIEFFCTNDETSDDGSASATFHVAVLQQAFKALGHSNETFLRMNADGFLSVQHMIESGSGDKAFVDALISPE 344
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C542_PYTIN) HSP 1 Score: 147 bits (371), Expect = 1.440e-38 Identity = 95/295 (32.20%), Postives = 149/295 (50.51%), Query Frame = 1 Query: 82 ITTILSCLSHGTRKDQQAQCEVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGA-------------KFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTF---GQE----APH------------LQLSAKGSNGSSEIDFPKSSEAFVCFECTA----RRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 858 + T+LSCL G +KDQ+ +C+V M R K Q + L + LF+ Y+ E F +NL L+E L +FG +LA +S+ ++Y AT L +E+ GV C ++ + + M AF +S + RCI++SE L++AF EL DL A V+++ G E + H L LSA+ GS EI+F +SS AF+ F C + + T+ + ++ +AL H+NET+ R+N +G L +QH I G+ +FVD L+ P+ Sbjct: 1 MVTLLSCLFQG-KKDQRVRCDVDNAGMLFTAHSRGKSLQIKTXLGAXLFESYEFREPDDTNGDGDGLDTQHSFALNLNALIESLSMFGSSALATSSLRLSYFPQTATLTLVVEDNGVICECAMQVLELEGNDMSQLEFESAFEQSAVLGRCIIQSEPLQDAFAELYDLPSAACVTISMFPDGDENQIDSDHRRRSVAHAQGRCLSLSAQSETGSCEIEFARSSAAFIEFFCASSGDNEPCAATFHVAVLQQAFKALAHSNETFLRMNADGFLSVQHMIETGTGERAFVDALVSPE 294 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9822.17829.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9822.17829.1 >prot_E_fasciculatus_S2_contig9822.17829.1 ID=prot_E_fasciculatus_S2_contig9822.17829.1|Name=mRNA_E_fasciculatus_S2_contig9822.17829.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=313bp GGGGGGQEEDEESDEVIFSCRLDNAKSITTILSCLSHGTRKDQQAQCEVTback to top mRNA from alignment at E_fasciculatus_S2_contig9822:947..5688- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9822.17829.1 ID=mRNA_E_fasciculatus_S2_contig9822.17829.1|Name=mRNA_E_fasciculatus_S2_contig9822.17829.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4742bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9822:947..5688- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9822:947..5688- >mRNA_E_fasciculatus_S2_contig9822.17829.1 ID=mRNA_E_fasciculatus_S2_contig9822.17829.1|Name=mRNA_E_fasciculatus_S2_contig9822.17829.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=939bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9822:947..5688- (Ectocarpus fasciculatus EfasUO2)back to top |