mRNA_E_fasciculatus_S2_contig9766.17762.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9766.17762.1
Unique NamemRNA_E_fasciculatus_S2_contig9766.17762.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9766.17762.1 vs.
Match: DRIM (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX0_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.610e-91
Identity = 163/177 (92.09%), Postives = 168/177 (94.92%), Query Frame = 1 
Query:    1 MEWLKACPSSISTLRAVALLLRAIRAA-GGDGAPPPCLSADASLPVISLLEPNLASESRLLRLSTVRVLARYDPLPLTEEPSAGXXXXXXLPRQSQGESSLLELAEAVEALPVSVAAERDLMWRLGQLEVLGRSGRLPRPYARLLATHALGLLRVKFSAVWPRAVAIVSALYRQSHQ 528
            MEWL+ACPSSISTLRAVALLLRAIRAA GGDGAPPPCLSADASLP+ISLLEPNLASESRL+RLSTVRVLARYDPLPLTEEP+A       LPRQSQGESS LELAEAVEALPVSVAAERDLMWRLGQLEVLGRSGRLPRPYARLLATHALGLLRVKFSAVWPRAVAIVSALYR+SHQ
Sbjct:  880 MEWLRACPSSISTLRAVALLLRAIRAAAGGDGAPPPCLSADASLPIISLLEPNLASESRLIRLSTVRVLARYDPLPLTEEPAAAGGG---LPRQSQGESSFLELAEAVEALPVSVAAERDLMWRLGQLEVLGRSGRLPRPYARLLATHALGLLRVKFSAVWPRAVAIVSALYRRSHQ 1053
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BLAST of mRNA_E_fasciculatus_S2_contig9766.17762.1 vs.
Match: DRIM (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 3.570e-90
Identity = 162/177 (91.53%), Postives = 166/177 (93.79%), Query Frame = 1 
Query:    1 MEWLKACPSSISTLRAVALLLRAIRAA-GGDGAPPPCLSADASLPVISLLEPNLASESRLLRLSTVRVLARYDPLPLTEEPSAGXXXXXXLPRQSQGESSLLELAEAVEALPVSVAAERDLMWRLGQLEVLGRSGRLPRPYARLLATHALGLLRVKFSAVWPRAVAIVSALYRQSHQ 528
            MEWL ACPSSISTLRAVALLLRAIRAA GGDG PPPCLSADASLPVI+LLEPNLAS+SRLLRLSTVRVLARYDPLPLTEEP+A       LPRQSQGESSLLELAEAVE LPVSVAAERDLMWRLGQLEVLGRSGRLPRPYARLLATHALGLLRVKFSAVWPRAVAIVSALYR+SHQ
Sbjct:  831 MEWLSACPSSISTLRAVALLLRAIRAAAGGDGTPPPCLSADASLPVIALLEPNLASDSRLLRLSTVRVLARYDPLPLTEEPAAAGGVG--LPRQSQGESSLLELAEAVEELPVSVAAERDLMWRLGQLEVLGRSGRLPRPYARLLATHALGLLRVKFSAVWPRAVAIVSALYRRSHQ 1005
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9766.17762.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DRIM1.610e-9192.09domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
DRIM3.570e-9091.53domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9766contigE_fasciculatus_S2_contig9766:4247..4774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score302.0
Seed ortholog evalue1.8e-79
Seed eggNOG ortholog2880.D8LFJ6
Model size528
KEGG koko:K14772,ko:K16569
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Exons1
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1823@1,KOG1823@2759
Cds size528
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.0259914-CDS-E_fasciculatus_S2_contig9766:4246..47741696842620.0259914-CDS-E_fasciculatus_S2_contig9766:4246..4774Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9766 4247..4774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9766.17762.1prot_E_fasciculatus_S2_contig9766.17762.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9766 4247..4774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9766.17762.1

>prot_E_fasciculatus_S2_contig9766.17762.1 ID=prot_E_fasciculatus_S2_contig9766.17762.1|Name=mRNA_E_fasciculatus_S2_contig9766.17762.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=176bp
MEWLKACPSSISTLRAVALLLRAIRAAGGDGAPPPCLSADASLPVISLLE
PNLASESRLLRLSTVRVLARYDPLPLTEEPSAGGGGGGGLPRQSQGESSL
LELAEAVEALPVSVAAERDLMWRLGQLEVLGRSGRLPRPYARLLATHALG
LLRVKFSAVWPRAVAIVSALYRQSHQ
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mRNA from alignment at E_fasciculatus_S2_contig9766:4247..4774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9766.17762.1 ID=mRNA_E_fasciculatus_S2_contig9766.17762.1|Name=mRNA_E_fasciculatus_S2_contig9766.17762.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9766:4247..4774+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGTGGCTGAAGGCCTGCCCTTCCTCCATCTCAACCCTCCGCGCGGT
GGCTCTTCTTCTCCGCGCCATCCGCGCCGCGGGCGGCGACGGCGCCCCCC
CCCCCTGCCTCTCGGCGGACGCCTCCTTGCCCGTGATCTCCCTTCTCGAG
CCCAACCTAGCCTCGGAGAGCCGCCTTCTCCGCCTTTCCACGGTACGGGT
GCTGGCACGGTACGACCCGCTTCCGCTGACCGAAGAACCCTCAGCAGGAG
GAGGAGGAGGAGGAGGCTTGCCGCGGCAGAGCCAGGGCGAGTCCAGCTTG
CTCGAGCTGGCGGAGGCGGTAGAAGCGCTCCCGGTCTCCGTTGCCGCGGA
GCGGGACCTCATGTGGAGGCTGGGGCAGCTGGAGGTGCTCGGCCGTTCGG
GCCGGCTGCCCCGCCCGTACGCCCGCCTGCTTGCCACCCACGCCCTCGGC
CTGCTGCGGGTCAAGTTCTCGGCCGTGTGGCCGCGGGCGGTGGCCATAGT
CTCGGCGCTGTACCGGCAGTCTCACCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9766:4247..4774+

>mRNA_E_fasciculatus_S2_contig9766.17762.1 ID=mRNA_E_fasciculatus_S2_contig9766.17762.1|Name=mRNA_E_fasciculatus_S2_contig9766.17762.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9766:4247..4774+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGTGGCTGAAGGCCTGCCCTTCCTCCATCTCAACCCTCCGCGCGGT
GGCTCTTCTTCTCCGCGCCATCCGCGCCGCGGGCGGCGACGGCGCCCCCC
CCCCCTGCCTCTCGGCGGACGCCTCCTTGCCCGTGATCTCCCTTCTCGAG
CCCAACCTAGCCTCGGAGAGCCGCCTTCTCCGCCTTTCCACGGTACGGGT
GCTGGCACGGTACGACCCGCTTCCGCTGACCGAAGAACCCTCAGCAGGAG
GAGGAGGAGGAGGAGGCTTGCCGCGGCAGAGCCAGGGCGAGTCCAGCTTG
CTCGAGCTGGCGGAGGCGGTAGAAGCGCTCCCGGTCTCCGTTGCCGCGGA
GCGGGACCTCATGTGGAGGCTGGGGCAGCTGGAGGTGCTCGGCCGTTCGG
GCCGGCTGCCCCGCCCGTACGCCCGCCTGCTTGCCACCCACGCCCTCGGC
CTGCTGCGGGTCAAGTTCTCGGCCGTGTGGCCGCGGGCGGTGGCCATAGT
CTCGGCGCTGTACCGGCAGTCTCACCAG
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