mRNA_E_fasciculatus_S2_contig9746.17744.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI) HSP 1 Score: 232 bits (591), Expect = 1.380e-74 Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 362
CIGFTKKQ+NQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE
Sbjct: 138 CIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 257
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: (field (mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9LTU9_BRACM) HSP 1 Score: 154 bits (389), Expect = 4.830e-45 Identity = 74/108 (68.52%), Postives = 94/108 (87.04%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER 326
CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +EAS CDL+ELV KFIPE+I +I KAVQSIYP+QNV+IRKVK LK PKFDL KLME+HGD T ED+G++++R
Sbjct: 52 CIGFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPESIGRDIEKAVQSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDR 159
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9F6V6_ARUDO) HSP 1 Score: 152 bits (384), Expect = 1.810e-44 Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 362
CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM+ +AS CDL+ELV KFIPE I EI KA SI+P+QNV+IRKVK LK PKFDL KLME+HGD ED+G+++ER E +EA+ E
Sbjct: 37 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYAKEDVGVKLERPAEVDEAMAGQE 156
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=6 Tax=Andropogoneae TaxID=147429 RepID=C5XD92_SORBI) HSP 1 Score: 154 bits (390), Expect = 4.290e-44 Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 362
CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IMS +AS CDL+ELV KFIPE I EI KA SI+P+QNV+IRKVK LK PKFD+ KLME+HGD ED+G++M+R EG+EA+ E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMTEIMSNQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYAKEDVGVKMDRPAEGDEAMGGQE 258
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: AT4G34670 (protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=C0Z2V4_ARATH) HSP 1 Score: 149 bits (375), Expect = 1.570e-43 Identity = 72/108 (66.67%), Postives = 90/108 (83.33%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER 326
CI FTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +EAS CDL+ELV KFIPE I EI KA Q IYP+QNV+IRKVK LK PKFDL KLME+HGD T ED+G++++R
Sbjct: 6 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDR 113
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=6 Tax=Pooideae TaxID=147368 RepID=I1HW94_BRADI) HSP 1 Score: 151 bits (381), Expect = 1.020e-42 Identity = 73/116 (62.93%), Postives = 95/116 (81.90%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 350
CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +A+ CDL+ELV KFIPE I EI KA SI+P+QNVY+RKVK LK PKFDL KLME+HGD ED+G++++R EG+EA+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMINQAASCDLKELVAKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYGKEDVGVKLDRPAEGDEAI 254
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA) HSP 1 Score: 150 bits (379), Expect = 3.530e-42 Identity = 78/112 (69.64%), Postives = 92/112 (82.14%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEG 338
CIGFTK+ NQIK+T YAQASQ++A+RKKM DIM+EEA KCDL+ELV KFIPE+IS EI KA Q I+P+QNV+IRKVK LKKP+FDL KLMEMHGD ED+G + R EG
Sbjct: 164 CIGFTKRMPNQIKKTAYAQASQVKAIRKKMVDIMTEEAVKCDLKELVAKFIPESISTEIEKACQGIFPLQNVFIRKVKMLKKPRFDLIKLMEMHGDGG-EDVGAGVSRGAEG 274
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LWK0_RHOSS) HSP 1 Score: 149 bits (375), Expect = 7.160e-42 Identity = 72/108 (66.67%), Postives = 92/108 (85.19%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER 326
CIGFTKK+ NQ K+TCYAQ+SQI+ +R+KM +IM ++ CDL++LVLKFIPE+I EI KA SIYP+QNV+IRKVK LK PKFDL+KLME+HGD +TED+G++MER
Sbjct: 139 CIGFTKKRVNQQKRTCYAQSSQIKQIRQKMREIMVNQSQSCDLKDLVLKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLSKLMEVHGDYSTEDVGVKMER 246
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a-2 n=77 Tax=Brassicales TaxID=3699 RepID=RS3A2_ARATH) HSP 1 Score: 149 bits (375), Expect = 7.550e-42 Identity = 72/108 (66.67%), Postives = 90/108 (83.33%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER 326
CI FTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +EAS CDL+ELV KFIPE I EI KA Q IYP+QNV+IRKVK LK PKFDL KLME+HGD T ED+G++++R
Sbjct: 139 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDR 246
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=4 Tax=Pooideae TaxID=147368 RepID=I1H8I6_BRADI) HSP 1 Score: 148 bits (374), Expect = 1.130e-41 Identity = 74/116 (63.79%), Postives = 96/116 (82.76%), Query Frame = 3
Query: 3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 350
CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +A+ CDL+ELV KFIPE I EI KA SI+P+QNVY+RKVK LK PKFDL KLME+HGD ED+GM+++R +G+EAV
Sbjct: 139 CIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMANQATSCDLKELVQKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-EDVGMKVDRPADGDEAV 253 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9746.17744.1 >prot_E_fasciculatus_S2_contig9746.17744.1 ID=prot_E_fasciculatus_S2_contig9746.17744.1|Name=mRNA_E_fasciculatus_S2_contig9746.17744.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp LASASPRSRRTRSSRLATRRRRRSERCARRCATSCRRRPPSATSGSSCSSback to top mRNA from alignment at E_fasciculatus_S2_contig9746:133..1562+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9746.17744.1 ID=mRNA_E_fasciculatus_S2_contig9746.17744.1|Name=mRNA_E_fasciculatus_S2_contig9746.17744.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1430bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9746:133..1562+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9746:133..1562+ >mRNA_E_fasciculatus_S2_contig9746.17744.1 ID=mRNA_E_fasciculatus_S2_contig9746.17744.1|Name=mRNA_E_fasciculatus_S2_contig9746.17744.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9746:133..1562+ (Ectocarpus fasciculatus EfasUO2)back to top |