mRNA_E_fasciculatus_S2_contig9746.17744.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9746.17744.1
Unique NamemRNA_E_fasciculatus_S2_contig9746.17744.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 1.380e-74
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 362
            CIGFTKKQ+NQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE
Sbjct:  138 CIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 257          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: (field (mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9LTU9_BRACM)

HSP 1 Score: 154 bits (389), Expect = 4.830e-45
Identity = 74/108 (68.52%), Postives = 94/108 (87.04%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER 326
            CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +EAS CDL+ELV KFIPE+I  +I KAVQSIYP+QNV+IRKVK LK PKFDL KLME+HGD T ED+G++++R
Sbjct:   52 CIGFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPESIGRDIEKAVQSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDR 159          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9F6V6_ARUDO)

HSP 1 Score: 152 bits (384), Expect = 1.810e-44
Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 362
            CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM+ +AS CDL+ELV KFIPE I  EI KA  SI+P+QNV+IRKVK LK PKFDL KLME+HGD   ED+G+++ER  E +EA+   E
Sbjct:   37 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYAKEDVGVKLERPAEVDEAMAGQE 156          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=6 Tax=Andropogoneae TaxID=147429 RepID=C5XD92_SORBI)

HSP 1 Score: 154 bits (390), Expect = 4.290e-44
Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 362
            CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IMS +AS CDL+ELV KFIPE I  EI KA  SI+P+QNV+IRKVK LK PKFD+ KLME+HGD   ED+G++M+R  EG+EA+   E
Sbjct:  139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMTEIMSNQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYAKEDVGVKMDRPAEGDEAMGGQE 258          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: AT4G34670 (protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=C0Z2V4_ARATH)

HSP 1 Score: 149 bits (375), Expect = 1.570e-43
Identity = 72/108 (66.67%), Postives = 90/108 (83.33%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER 326
            CI FTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +EAS CDL+ELV KFIPE I  EI KA Q IYP+QNV+IRKVK LK PKFDL KLME+HGD T ED+G++++R
Sbjct:    6 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDR 113          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=6 Tax=Pooideae TaxID=147368 RepID=I1HW94_BRADI)

HSP 1 Score: 151 bits (381), Expect = 1.020e-42
Identity = 73/116 (62.93%), Postives = 95/116 (81.90%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 350
            CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM  +A+ CDL+ELV KFIPE I  EI KA  SI+P+QNVY+RKVK LK PKFDL KLME+HGD   ED+G++++R  EG+EA+
Sbjct:  139 CIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMINQAASCDLKELVAKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYGKEDVGVKLDRPAEGDEAI 254          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.530e-42
Identity = 78/112 (69.64%), Postives = 92/112 (82.14%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEG 338
            CIGFTK+  NQIK+T YAQASQ++A+RKKM DIM+EEA KCDL+ELV KFIPE+IS EI KA Q I+P+QNV+IRKVK LKKP+FDL KLMEMHGD   ED+G  + R  EG
Sbjct:  164 CIGFTKRMPNQIKKTAYAQASQVKAIRKKMVDIMTEEAVKCDLKELVAKFIPESISTEIEKACQGIFPLQNVFIRKVKMLKKPRFDLIKLMEMHGDGG-EDVGAGVSRGAEG 274          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LWK0_RHOSS)

HSP 1 Score: 149 bits (375), Expect = 7.160e-42
Identity = 72/108 (66.67%), Postives = 92/108 (85.19%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER 326
            CIGFTKK+ NQ K+TCYAQ+SQI+ +R+KM +IM  ++  CDL++LVLKFIPE+I  EI KA  SIYP+QNV+IRKVK LK PKFDL+KLME+HGD +TED+G++MER
Sbjct:  139 CIGFTKKRVNQQKRTCYAQSSQIKQIRQKMREIMVNQSQSCDLKDLVLKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLSKLMEVHGDYSTEDVGVKMER 246          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a-2 n=77 Tax=Brassicales TaxID=3699 RepID=RS3A2_ARATH)

HSP 1 Score: 149 bits (375), Expect = 7.550e-42
Identity = 72/108 (66.67%), Postives = 90/108 (83.33%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER 326
            CI FTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +EAS CDL+ELV KFIPE I  EI KA Q IYP+QNV+IRKVK LK PKFDL KLME+HGD T ED+G++++R
Sbjct:  139 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDR 246          
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Match: 40S (ribosomal protein S3a n=4 Tax=Pooideae TaxID=147368 RepID=I1H8I6_BRADI)

HSP 1 Score: 148 bits (374), Expect = 1.130e-41
Identity = 74/116 (63.79%), Postives = 96/116 (82.76%), Query Frame = 3
Query:    3 CIGFTKKQENQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 350
            CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +A+ CDL+ELV KFIPE I  EI KA  SI+P+QNVY+RKVK LK PKFDL KLME+HGD   ED+GM+++R  +G+EAV
Sbjct:  139 CIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMANQATSCDLKELVQKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-EDVGMKVDRPADGDEAV 253          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9746.17744.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
40S1.380e-7499.17ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=287... [more]
(field4.830e-4568.52mustard) hypothetical protein n=1 Tax=Brassica cam... [more]
Uncharacterized1.810e-4463.33protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A... [more]
40S4.290e-4464.17ribosomal protein S3a n=6 Tax=Andropogoneae TaxID=... [more]
AT4G346701.570e-4366.67protein n=1 Tax=Arabidopsis thaliana TaxID=3702 Re... [more]
40S1.020e-4262.93ribosomal protein S3a n=6 Tax=Pooideae TaxID=14736... [more]
40S3.530e-4269.64ribosomal protein S3a n=1 Tax=Fibrocapsa japonica ... [more]
40S7.160e-4266.67ribosomal protein S3a n=1 Tax=Rhododendron simsii ... [more]
40S7.550e-4266.67ribosomal protein S3a-2 n=77 Tax=Brassicales TaxID... [more]
40S1.130e-4163.79ribosomal protein S3a n=4 Tax=Pooideae TaxID=14736... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9746contigE_fasciculatus_S2_contig9746:133..1562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size453
Hectar predicted targeting categoryother localisation
Exons3
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.7625453-CDS-E_fasciculatus_S2_contig9746:132..2831696842618.7625453-CDS-E_fasciculatus_S2_contig9746:132..283Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9746 133..283 +
1696842618.7723417-CDS-E_fasciculatus_S2_contig9746:836..9461696842618.7723417-CDS-E_fasciculatus_S2_contig9746:836..946Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9746 837..946 +
1696842618.7811673-CDS-E_fasciculatus_S2_contig9746:1371..15151696842618.7811673-CDS-E_fasciculatus_S2_contig9746:1371..1515Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9746 1372..1515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.7927668-UTR-E_fasciculatus_S2_contig9746:1515..15621696842618.7927668-UTR-E_fasciculatus_S2_contig9746:1515..1562Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9746 1516..1562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9746.17744.1prot_E_fasciculatus_S2_contig9746.17744.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9746 133..1515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9746.17744.1

>prot_E_fasciculatus_S2_contig9746.17744.1 ID=prot_E_fasciculatus_S2_contig9746.17744.1|Name=mRNA_E_fasciculatus_S2_contig9746.17744.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
LASASPRSRRTRSSRLATRRRRRSERCARRCATSCRRRPPSATSGSSCSS
SSPRTSPERSSRPCRASTRCRTSTSARSRRSRSPSSTSPSSWRCTVTTPP
RTSAWRWRGRMRARKLSLRTSKARPASGMLSHFF*
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mRNA from alignment at E_fasciculatus_S2_contig9746:133..1562+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9746.17744.1 ID=mRNA_E_fasciculatus_S2_contig9746.17744.1|Name=mRNA_E_fasciculatus_S2_contig9746.17744.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1430bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9746:133..1562+ (Ectocarpus fasciculatus EfasUO2)
CTTGCATCGGCTTCACCAAGAAGCAGGAGAACCAGATCAAGCAGACTTGC TACGCGCAGGCGTCGCAGATCCGAGCGGTGCGCAAGAAGATGTGCGACAT CATGTCGGAGGAGGCCTCCAAGTGCGACCTCAGGGAGCTCGTGCTCAAGT TGTGAGTGCCTCTCCGCGCTACGAACCATGCTCATTAACCGGCTTAATGA ACGACACACATGGGTACCCCGGGTGTTTTTGCTTGCTGCGGGTTCGTGAG AGATCGTGTCGGCCATTTTTGGCGAAGGTAAAGCAGTAGACATGAGCTCT CGGAACGTGCTTTTTAGCCGGTGACGACAAAGACGTGTTGCTCGACGGTT GGATGCATAACCATGGAATGTAGGCGTACTGGGCACGTACAGGTAAAAGC TGCAGTTGGAGGAAAACTTGGCATGTAGTTTCATGCTGTACCTCTGGGTG GGTTGCGTGACATAGCATCAGCATTTCAGTCAAGCAGCAAGCGATCTTAT CCAACTCGCGCCTGTCACCCGGCGACCAATGCACTTACGGTCGGCTTGGC TTTCCGCACTTGAGGTCTGTGATCTGGCTCCTTCTTCTCTAGAGTGTCTT TCCGCGACATGACATGAGATCACGTGTTGTACTTGCCCCGCCTCACTCCA ACCCCTTGCCGACCATGGCCGTGTGTGCAATGTCGTGGTGTGTTACTGTT GCAGCATCCCCGAGAACATCTCCGGAGAGATCCTCAAGGCCGTGCAGAGC ATCTACCCGATGCAGAACGTCTACATCCGCAAGGTCAAGGCGCTCAAGAA GCCCAAGTTCGACCGTGAGTGTATGACATTTGTGTTGTCGGCGTATCCCC GGGGACGCTCGATTTCAGCGCAGAGTTTGCCCCGGTCGTGTGCACGCGGA GGTTTTTGTTTGGTTGGGTTTGTTTGCATCTGGCAGTGGTGTTCGAAGGT CGGTGTACAACGGCGACGACTTGTTGCCTGTTAGTTTTTGCTCTATTTCG CGGGGATTTTTCACAAGTGTGCGAAGTATTCTCGGTTGTGTTGCGCTCTC TCTGCTTTTAGCCCAGGCAGCGACCAACGGAGAGGATGGTGCCATTTCCA CTCCCCGATCTAAATCGACACGAGCTACTCACACGCCATCCCCCAAAACT CAGCGACCCACTGCTGTGTAGCACAAAAGTGTTCCGGCCGCCCTAATGTG ACCACCCTGCTGCCTGCCCCCCCCCGTAACTCGCTGCAGTCACCAAGCTC ATGGAGATGCACGGTGACAACACCACCGAGGACATCGGCATGGAGATGGA GAGGGAGGATGAGGGCGAGGAAGCTGTCGTTGCGGACGAGTAAAGCCCGA CCCGCTAGCGGCATGCTCTCGCACTTCTTTTAGCCTTCCTTCGTTCGACC GGGCCACCCCACGTCCTTGACTCCAGTTGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9746:133..1562+

>mRNA_E_fasciculatus_S2_contig9746.17744.1 ID=mRNA_E_fasciculatus_S2_contig9746.17744.1|Name=mRNA_E_fasciculatus_S2_contig9746.17744.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9746:133..1562+ (Ectocarpus fasciculatus EfasUO2)
CTTGCATCGGCTTCACCAAGAAGCAGGAGAACCAGATCAAGCAGACTTGC
TACGCGCAGGCGTCGCAGATCCGAGCGGTGCGCAAGAAGATGTGCGACAT
CATGTCGGAGGAGGCCTCCAAGTGCGACCTCAGGGAGCTCGTGCTCAAGT
TCATCCCCGAGAACATCTCCGGAGAGATCCTCAAGGCCGTGCAGAGCATC
TACCCGATGCAGAACGTCTACATCCGCAAGGTCAAGGCGCTCAAGAAGCC
CAAGTTCGACCTCACCAAGCTCATGGAGATGCACGGTGACAACACCACCG
AGGACATCGGCATGGAGATGGAGAGGGAGGATGAGGGCGAGGAAGCTGTC
GTTGCGGACGAGTAAAGCCCGACCCGCTAGCGGCATGCTCTCGCACTTCT
TTTAG
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