mRNA_E_fasciculatus_S2_contig9644.17654.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9644.17654.1
Unique NamemRNA_E_fasciculatus_S2_contig9644.17654.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: Putative (hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 4.110e-50
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:   10 RRELREKHTPEALKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            RRELREKHTPEALK SRDAHEANKPKLKSDLKKTTAFTKKVK LSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR
Sbjct:  428 RRELREKHTPEALKASRDAHEANKPKLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 522
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BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: Armadillo-type (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 7.430e-33
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 DARRRELREKHTPEALKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            D  RR LR ++TP A+  SR +H ANK KLKSDLKKT+ FT KV+ L+E QR+ +TKD+ETLNL+ YVSE+VDAVAE +LK +DVSVAVHLCC+MHQR
Sbjct:   11 DEERRALRARNTPGAVAASRASHNANKSKLKSDLKKTSTFTSKVRTLTEAQRATITKDIETLNLSHYVSEIVDAVAEAKLKTSDVSVAVHLCCMMHQR 108
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BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: Regulator (of nonsense transcripts 2 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7M352_PENVA)

HSP 1 Score: 87.4 bits (215), Expect = 1.070e-19
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:   16 ELREKHTPEALKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            E +E   PE +K   D  E N   L S LKK TAF +K+K L+E Q  +L KD+++LNL +YVSEV  AV E +LK +D+S AVHLC L+HQR
Sbjct:   39 EKKENDDPEIVK---DRPELNTALLDSSLKKNTAFIRKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDISTAVHLCSLLHQR 128
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BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D616_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.360e-19
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:   10 RRELREKHTPEALKVSRDAHEANKPKLKSDLKKTTAFTKKVKV-LSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            R +LR  + P A + SR AHEA   +LKSDLK+TTAF K+V+  L E+QR AL +D+  LNL+ +VSE+V AVA+ +LK ADV  A+ +C  +HQR
Sbjct:  149 RAKLRLLNAPSAARASRAAHEAGLRQLKSDLKRTTAFIKRVRTGLGEEQREALLRDISGLNLSMFVSELVQAVADAKLKGADVPAAIQVCSALHQR 244
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BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: Regulator (of nonsense transcripts 2-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5NAL5_HOMAM)

HSP 1 Score: 87.8 bits (216), Expect = 3.840e-18
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    4 ARRRELREKHTPEALKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            AR+ ELR ++    L V++D  E N   L S LKK TAF KK+K L+E Q  +L +D+++LNL +YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  104 ARKAELRVQN----LAVAKDRPELNTAMLDSSLKKNTAFIKKLKNLTESQHDSLIRDLQSLNLTKYVSEVAQAVVEAKLKMSDITTAVHLCSLLHQR 196
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BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: regulator (of nonsense transcripts 2-like isoform X1 n=5 Tax=Astacidea TaxID=6712 RepID=UPI001C45EDC1)

HSP 1 Score: 87.8 bits (216), Expect = 3.880e-18
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    4 ARRRELREKHTPEALKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            AR+ ELR ++    L V++D  E N   L S LKK TAF KK+K L+E Q  +L +D+++LNL +YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  130 ARKAELRVQN----LAVAKDRPELNTAMLDSSLKKNTAFIKKLKNLTESQHDSLIRDLQSLNLTKYVSEVAQAVVEAKLKMSDITTAVHLCSLLHQR 222
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BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVG7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.010e-18
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    1 DARRRELREKHTPEALKVSRDAHEANKPKLKSDLKKTTAFTKKVKV-LSEDQRSALTKDVETLNLNRYVSEVVDAV----AENRLKNADVSVAVHLCCLMHQR 294
            D  R+ LRE   PEAL+  R  H ANK KLKSDL+K TAFTKKVK  + E   + L KD+ETLNL+ Y+SE+V A+    A  RLK +D+   V +C  +H R
Sbjct:   32 DQERQRLREASLPEALEAFRAQHAANKSKLKSDLRKATAFTKKVKAGVVERDVTGLLKDIETLNLSMYISEIVAAIVSPEALQRLKTSDIHSVVRICVALHLR 134
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BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: regulator (of nonsense transcripts 2-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C716FA3)

HSP 1 Score: 86.7 bits (213), Expect = 9.680e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:   46 LKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            + V +D  E N   L S LKK TAF KK+K L+E Q  +L KD+++LNL +YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  130 IAVVKDRPELNTALLDSSLKKNTAFIKKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDIATAVHLCSLLHQR 212
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: regulator (of nonsense transcripts 2-like n=5 Tax=Penaeus TaxID=133894 RepID=UPI001C710D49)

HSP 1 Score: 86.7 bits (213), Expect = 9.870e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:   46 LKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            + V +D  E N   L S LKK TAF KK+K L+E Q  +L KD+++LNL +YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  130 IAVVKDRPELNTALLDSSLKKNTAFIKKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDIATAVHLCSLLHQR 212
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Match: Uncharacterized (protein n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4WH54_SCYOL)

HSP 1 Score: 85.9 bits (211), Expect = 1.840e-17
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   46 LKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 294
            L V++D  E N   L S LKK TAF KK+K L+E Q  +L +D+++LNL +YVSEV  AV E +LK +D++ AVH+C L+HQR
Sbjct:  128 LAVAKDRPELNTALLDSSLKKNTAFIKKLKNLTESQHESLVRDLQSLNLTKYVSEVAQAVVEAKLKMSDINTAVHICSLLHQR 210
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9644.17654.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Putative4.110e-5097.89hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_E... [more]
Armadillo-type7.430e-3366.33protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Regulator1.070e-1951.61of nonsense transcripts 2 n=1 Tax=Penaeus vannamei... [more]
Uncharacterized2.360e-1952.08protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Regulator3.840e-1850.52of nonsense transcripts 2-like n=1 Tax=Homarus ame... [more]
regulator3.880e-1850.52of nonsense transcripts 2-like isoform X1 n=5 Tax=... [more]
Hypothetical4.010e-1850.49protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
regulator9.680e-1853.01of nonsense transcripts 2-like n=1 Tax=Penaeus jap... [more]
regulator9.870e-1853.01of nonsense transcripts 2-like n=5 Tax=Penaeus Tax... [more]
Uncharacterized1.840e-1751.81protein n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9644contigE_fasciculatus_S2_contig9644:201..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score178.3
Seed ortholog evalue1.7e-42
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
Model size294
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
Exons1
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
Cds size294
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842610.511531-CDS-E_fasciculatus_S2_contig9644:200..4941696842610.511531-CDS-E_fasciculatus_S2_contig9644:200..494Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9644 201..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9644.17654.1prot_E_fasciculatus_S2_contig9644.17654.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9644 201..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9644.17654.1

>prot_E_fasciculatus_S2_contig9644.17654.1 ID=prot_E_fasciculatus_S2_contig9644.17654.1|Name=mRNA_E_fasciculatus_S2_contig9644.17654.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
DARRRELREKHTPEALKVSRDAHEANKPKLKSDLKKTTAFTKKVKVLSED
QRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR
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mRNA from alignment at E_fasciculatus_S2_contig9644:201..494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9644.17654.1 ID=mRNA_E_fasciculatus_S2_contig9644.17654.1|Name=mRNA_E_fasciculatus_S2_contig9644.17654.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9644:201..494+ (Ectocarpus fasciculatus EfasUO2)
GACGCTCGCAGGCGGGAGCTGCGGGAGAAGCACACGCCGGAGGCCCTGAA
GGTGTCGAGGGACGCCCACGAGGCCAACAAGCCCAAGCTCAAGTCCGACC
TGAAGAAGACGACCGCCTTCACCAAGAAGGTCAAGGTCCTGTCGGAGGAC
CAGAGGTCTGCGCTTACCAAGGACGTGGAGACGCTCAACCTTAACCGTTA
CGTGAGCGAGGTGGTCGACGCCGTGGCGGAGAACAGGCTCAAGAACGCCG
ACGTTTCGGTGGCGGTGCACCTGTGCTGCCTCATGCACCAGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9644:201..494+

>mRNA_E_fasciculatus_S2_contig9644.17654.1 ID=mRNA_E_fasciculatus_S2_contig9644.17654.1|Name=mRNA_E_fasciculatus_S2_contig9644.17654.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9644:201..494+ (Ectocarpus fasciculatus EfasUO2)
GACGCTCGCAGGCGGGAGCTGCGGGAGAAGCACACGCCGGAGGCCCTGAA
GGTGTCGAGGGACGCCCACGAGGCCAACAAGCCCAAGCTCAAGTCCGACC
TGAAGAAGACGACCGCCTTCACCAAGAAGGTCAAGGTCCTGTCGGAGGAC
CAGAGGTCTGCGCTTACCAAGGACGTGGAGACGCTCAACCTTAACCGTTA
CGTGAGCGAGGTGGTCGACGCCGTGGCGGAGAACAGGCTCAAGAACGCCG
ACGTTTCGGTGGCGGTGCACCTGTGCTGCCTCATGCACCAGAGG
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