mRNA_E_fasciculatus_S2_contig958.17599.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig958.17599.1
Unique NamemRNA_E_fasciculatus_S2_contig958.17599.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig958.17599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA8_ECTSI)

HSP 1 Score: 862 bits (2228), Expect = 6.890e-310
Identity = 487/555 (87.75%), Postives = 507/555 (91.35%), Query Frame = 1
Query:    1 LKAKDDEIASLKASKATVTNRQEDWQEDPHPPEQDPDPSERTNAGRCGPRKLVTYGRMVVTAGRLASEPRQRPENAVAQPSEQETLETERAVAAMGAKHTEQQLLRASRDVRGQLERALQEAEALRADNIAFKTRVNLAEKEKAHLETRVALLSDEVKLQIAPLKALQLELAQTRSDTETMRQRLKEERRESRLRVGDSDKARSEAQQRIEVLEFDLNETAKACQRESLKASTFEGMYQEASTTATLLQAEVEQCRTDAKMIAQELTRMQIESENSSPLAGLTPSLALSSPIDVGRAVSGAEGEEVTKGKLGEEQEAETTSLKKTITQLESDKSESGGAMKNSLEAHRLEREEREQAFKETQKRADSLAEENSRLRATIEKQEAESERQREEQDERHDRDIKREIILSQQNLDSASLRDRLCRTLDELCGAEEAGELALTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGMPAEDGNGRVPGGSGESPGSATHKKPECYLCGQHEGEAADRVVCVGMAPNRALASVVVKFAFRRQLVRTLKEIGAALSG*GSV 1665
            LKAKD EIASLKA K  V  RQED Q+DP  PE+ P PSERTNAGRCGPRKLVTYG+MVVTAGRLASEPRQRPE AVAQPSE+ETLETERAVAAMGAKHTEQQLLRASRDVRGQLERALQEAEALRADNIAFKTRVN+AEKEKAHLETRVALLSDEVKLQIAPLKALQLEL QTRSDTETMRQRLKEERRESRLRV DSDKA+SEAQQRI++LEFDLNETAKACQRESLKASTFEGMYQEAST ATLLQAEVEQCRTDAKMIAQELTRMQIESE SS L GLTPSLALSSP+DVGRAV G +G+EVT GKLGEEQEAE  SLKK I QL S+KS+SG AMKN LEAHR E EERE+AFKE QK+ADS AEEN  LRATIEKQE ESERQR E+DERHDRDIKREIILSQQNLDSASLRDRLCRT+DELCGAEEAGEL LTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGM AEDG GRVPGGSGESPGS TH +PECYLCGQ    A DRV CVGMAPNRALASVV+KFAFRRQLV+TLKEIGAALSG GSV
Sbjct:  100 LKAKDHEIASLKALKENV--RQEDRQQDP--PEKGPGPSERTNAGRCGPRKLVTYGKMVVTAGRLASEPRQRPEKAVAQPSEKETLETERAVAAMGAKHTEQQLLRASRDVRGQLERALQEAEALRADNIAFKTRVNVAEKEKAHLETRVALLSDEVKLQIAPLKALQLELTQTRSDTETMRQRLKEERRESRLRVSDSDKAKSEAQQRIDLLEFDLNETAKACQRESLKASTFEGMYQEASTMATLLQAEVEQCRTDAKMIAQELTRMQIESEKSSALVGLTPSLALSSPVDVGRAVGGVDGKEVTTGKLGEEQEAEIASLKKIIAQLASEKSDSGDAMKNLLEAHRREGEERERAFKEMQKKADSFAEENIGLRATIEKQEEESERQRVEEDERHDRDIKREIILSQQNLDSASLRDRLCRTVDELCGAEEAGELVLTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGMSAEDGTGRVPGGSGESPGSVTHAEPECYLCGQQGRGATDRVACVGMAPNRALASVVMKFAFRRQLVQTLKEIGAALSGQGSV 650          
BLAST of mRNA_E_fasciculatus_S2_contig958.17599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8F2_9PHAE)

HSP 1 Score: 781 bits (2018), Expect = 1.800e-279
Identity = 453/560 (80.89%), Postives = 475/560 (84.82%), Query Frame = 1
Query:   61 RQEDWQEDPHPPEQDPDPSERTNAGRCGPRKLVTYGRMVVTAGRLASEPRQRPENAVAQPSEQETLETERAVAAMGAKHTEQQLLRASRDVRGQLERALQEAEALRADNIAFKTRVNLAEKEKAHLETRVALLSDEVKLQIAPLKALQLELAQTRSDTETMRQRLKEERRESRLRVGDSDKARSEAQQRIEVLEFDLNETAKACQRESLKASTFEGMYQEASTTATLLQAEVEQCRTDAKMIAQELTRMQIESENSSPLAGLTPSLALSSPIDVGRAVSGAEGEEVTKGKLGEEQEAETTSLKKTITQLESDKSESGGAMKNSLEAHRLEREEREQAFKETQK-----------------------------RADSLAEENSRLRATIEKQEAESERQREEQDERHDRDIKREIILSQQNLDSASLRDRLCRTLDELCGAEEAGELALTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGMPAEDGNGRVPGGSGESPGSATHKKPECYLCGQHEGEAADRVVCVGMAPNRALASVVVKFAFRRQLVRTLKEIGAALSG 1653
            RQEDWQ+DP  PEQ P PSERTN G+ GPRKL+TYG+MVVTAGRLASEPRQRPE AVAQPSEQETLE ERAVAAMGAKHTEQQLLRASRDVRGQLERALQEAEALRADNIAFKTRVNLAEKEKAHLETRVALLSDEVKLQIAPLKALQLEL QTRSDTETMRQ LKEERRESRLRV DSDKA+SEAQQRIE+LEFDLNET KACQ     ASTFEGMYQEAST ATLLQAEVEQCRTDAK+IAQE     IESE SS L GLTPS+ALSS +DVGRAV G EGEEVTK KL EEQEAE  SLKKTI QLES+KSESG AMK+ LEAHR E EERE+AFKE QK                             RAD  AEENS LRA IEKQEA+S+RQR E+DER DRDIKREIILSQQ+LDSASLRDRLCRTLD LCGAEEAGEL LTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGM AEDG+GR+PGGSGESPGS TH +PECYLCGQ +  A DRV CVG+APNRALASVVVKFAFRRQLV+ LKEIGAALSG
Sbjct:   16 RQEDWQQDP--PEQGPGPSERTNTGKWGPRKLITYGKMVVTAGRLASEPRQRPEKAVAQPSEQETLEKERAVAAMGAKHTEQQLLRASRDVRGQLERALQEAEALRADNIAFKTRVNLAEKEKAHLETRVALLSDEVKLQIAPLKALQLELTQTRSDTETMRQXLKEERRESRLRVSDSDKAKSEAQQRIELLEFDLNETVKACQ-----ASTFEGMYQEASTMATLLQAEVEQCRTDAKIIAQE-----IESEKSSALVGLTPSVALSSSVDVGRAVGGVEGEEVTKEKLREEQEAEIASLKKTIAQLESEKSESGDAMKSLLEAHRREGEERERAFKEMQKKCVTSGARILTSSHCLSFSQSHSIRRPARRADFFAEENSGLRAKIEKQEADSKRQRVEEDERRDRDIKREIILSQQHLDSASLRDRLCRTLDALCGAEEAGELVLTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGMSAEDGSGRMPGGSGESPGSVTHAEPECYLCGQQDRGAVDRVACVGIAPNRALASVVVKFAFRRQLVQALKEIGAALSG 563          
BLAST of mRNA_E_fasciculatus_S2_contig958.17599.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WD04_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.990e-6
Identity = 40/120 (33.33%), Postives = 57/120 (47.50%), Query Frame = 1
Query: 1267 RTLDELCGAEEAGELALTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGMPAEDGNGRVPGGSGESPGSATHKKPECYLCGQHEGEAADRVVCVGMAPNRALASVVVKFAFRRQLVRTL 1626
            +T++ L  AE A E   TC +C +LFK P T+APCGHT CA C          + GN  VP                C +C     E + ++    + PN ALA +  +F FR+Q + +L
Sbjct:  727 QTVNSLLDAEHASESTFTCLQCMQLFKQPMTLAPCGHTYCASCLT--------KCGNVDVP------------SSIVCKMC-----ETSTKMETECIFPNLALADLTARFIFRQQSLASL 821          
BLAST of mRNA_E_fasciculatus_S2_contig958.17599.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKS0_PYTIN)

HSP 1 Score: 60.1 bits (144), Expect = 9.920e-6
Identity = 39/125 (31.20%), Postives = 58/125 (46.40%), Query Frame = 1
Query: 1252 RDRLCRTLDELCGAEEAGELALTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGMPAEDGNGRVPGGSGESPGSATHKKPECYLCGQHEGEAADRVVCVGMAPNRALASVVVKFAFRRQLVRTL 1626
            ++ L RT+  L  AE A E   TC +C +LF DP T+ PCGHT C+ C          + GN  +P                C  C + + E  +     G+  N+ALA +  +F FR+Q + +L
Sbjct:  636 QEALERTVGSLVEAETASEATFTCMQCMRLFVDPMTLTPCGHTYCSSCLD--------KLGNTSIP------------STIVCKECPKDQHEETE-----GIFTNQALADLTARFIFRQQSLSSL 735          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig958.17599.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized6.890e-31087.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.800e-27980.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RING-type1.990e-633.33domain-containing protein n=1 Tax=Phytophthora meg... [more]
RING-type9.920e-631.20domain-containing protein n=1 Tax=Pythium insidios... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig958contigE_fasciculatus_S2_contig958:77..4618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.2
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog164328.Phyra74793
Model size1758
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.Ring finger
EggNOG OGs2DZKP@1,2S741@2759,3QFA2@4776
Cds size1485
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig958.17599.1prot_E_fasciculatus_S2_contig958.17599.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig958 668..4516 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.5992973-UTR-E_fasciculatus_S2_contig958:76..1221696842604.5992973-UTR-E_fasciculatus_S2_contig958:76..122Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig958 77..122 +
1696842604.6115835-UTR-E_fasciculatus_S2_contig958:542..6671696842604.6115835-UTR-E_fasciculatus_S2_contig958:542..667Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig958 543..667 +
1696842604.7078128-UTR-E_fasciculatus_S2_contig958:4516..46181696842604.7078128-UTR-E_fasciculatus_S2_contig958:4516..4618Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig958 4517..4618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.623407-CDS-E_fasciculatus_S2_contig958:667..8221696842604.623407-CDS-E_fasciculatus_S2_contig958:667..822Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 668..822 +
1696842604.6362631-CDS-E_fasciculatus_S2_contig958:1093..12131696842604.6362631-CDS-E_fasciculatus_S2_contig958:1093..1213Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 1094..1213 +
1696842604.6510332-CDS-E_fasciculatus_S2_contig958:1704..18421696842604.6510332-CDS-E_fasciculatus_S2_contig958:1704..1842Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 1705..1842 +
1696842604.6607795-CDS-E_fasciculatus_S2_contig958:2137..22281696842604.6607795-CDS-E_fasciculatus_S2_contig958:2137..2228Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 2138..2228 +
1696842604.6703777-CDS-E_fasciculatus_S2_contig958:2492..26121696842604.6703777-CDS-E_fasciculatus_S2_contig958:2492..2612Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 2493..2612 +
1696842604.6830845-CDS-E_fasciculatus_S2_contig958:3148..34441696842604.6830845-CDS-E_fasciculatus_S2_contig958:3148..3444Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 3149..3444 +
1696842604.698392-CDS-E_fasciculatus_S2_contig958:3951..45161696842604.698392-CDS-E_fasciculatus_S2_contig958:3951..4516Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 3952..4516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig958.17599.1

>prot_E_fasciculatus_S2_contig958.17599.1 ID=prot_E_fasciculatus_S2_contig958.17599.1|Name=mRNA_E_fasciculatus_S2_contig958.17599.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=495bp
MVVTAGRLASEPRQRPENAVAQPSEQETLETERAVAAMGAKHTEQQLLRA
SRDVRGQLERALQEAEALRADNIAFKTRVNLAEKEKAHLETRVALLSDEV
KLQIAPLKALQLELAQTRSDTETMRQRLKEERRESRLRVGDSDKARSEAQ
QRIEVLEFDLNETAKACQRESLKASTFEGMYQEASTTATLLQAEVEQCRT
DAKMIAQELTRMQIESENSSPLAGLTPSLALSSPIDVGRAVSGAEGEEVT
KGKLGEEQEAETTSLKKTITQLESDKSESGGAMKNSLEAHRLEREEREQA
FKETQKRADSLAEENSRLRATIEKQEAESERQREEQDERHDRDIKREIIL
SQQNLDSASLRDRLCRTLDELCGAEEAGELALTCQRCAKLFKDPHTMAPC
GHTLCAGCCAGGDGGMPAEDGNGRVPGGSGESPGSATHKKPECYLCGQHE
GEAADRVVCVGMAPNRALASVVVKFAFRRQLVRTLKEIGAALSG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig958:77..4618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig958.17599.1 ID=mRNA_E_fasciculatus_S2_contig958.17599.1|Name=mRNA_E_fasciculatus_S2_contig958.17599.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4542bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig958:77..4618+ (Ectocarpus fasciculatus EfasUO2)
TTGAAAGCTAAAGACGATGAGATCGCCTCCTTGAAAGCCTCGAAAGGTGA GCGCGGCGTGGTCTTGGCATCCCAGTACAAAACCACCATTCATTATCAAA ACGAATAATTAATGTGTGAAGAACGTTGAGGAGATGGAACAAACGGTAAA CGGTACAGAACGCGGGCGAGGTAGAGTACCATCATCGCCAGGTATTGACA ATAACTCTTCTTGCACAATGGTTTTGCAGCCAAGAAAGGGAAACAAGGTC ATGAAATATTCTGGCAGGCGGACTCCCACAACCCTCCCTCCGTCAACAGG TCGACCTCTCCTTGAGAGACCCATCTTTAGAATGTACTTGCCTCCTTTGT ACTATTCCATGACGCATACATCTCGCATCTACCGCCGTTTACCGTTCAAT AACGAACCCGTGTGATGATCGTCCCTTCGCATCGTTCAACTGCTGTATAT GTATATAACACCCAAGCAACCGTTACAAACAGACAAGAGGACTGGCAGGA AGATCCTCATCCTCCAGAACAAGACCCTGACCCGTCCGAAAGAACGAACG CTGGAAGATGTGGTCCGAGAAAGCTGGTCACCTACGGGAGAATGGTTGTC ACGGCCGGCAGGCTAGCATCAGAACCCCGGCAGAGACCCGAAAATGCCGT GGCGCAACCATCGGAGCAAGAGACGCTGGAGACGGAGAGGGCGGTGGCTG CCATGGGAGCCAAACACACCGAACAACAACTTCTGCGTGCTAGCCGGTAG GCTTGATGCAAACCTCGAATGATTCCTACCCTGAGCATATTTTCATTGTC TCCCAGAGATCAGCCCATACGGGGGGATCGGTTGCAAGTACGTTGGGGGT CTCTGCAGCTGGTAGTGTCCCGTGCCGGAACTGGTTCCATCCAATCTCGC AGCTTGGCATGACCCTAAATGACACGGTCCTCAATATCACGCTAGATATG CATGGGTTTTCATAGTTGGCATCGGTCTGGTTACCGGTTCCATTGAGCGA ATGCGTGCTTGTGACAGAGATGTTCGGGGGCAGCTGGAGCGCGCCCTTCA AGAGGCCGAAGCCCTTCGTGCCGACAACATCGCATTCAAAACCAGAGTCA ACCTCGCAGAAAAGGAAAAGGCACACCTAGAGACGCGGTAAGTAAGCACA TCTGGCTGCCACATGTGTTGCGGGGGGGTATTTCTTGCTATACCCCGAGG AATTAGATTCTCTAGTCAGGCAAGTTGGGCTATTTCGACCGCTGGGCATT CCCTCTTTTCTAGGTTCGCATTATTTCTCCGCGCGTGAGCCGTTTGGTGT CTCACCAACGGTGCACCATGTTCTTTTGCATTCAATCGAGTGTGCCATAC CGTACGGGCCCGGAGATAACAAACGTTAAGATCGGCATCCCTTCTTATTT CGTCGCCACTACCGTCGAGCACAGGTTGTTACAGGTTGTGATATATAGAG TTTAATAGTAGTCTAAGTATACGCCGCTTAGGTGTGCGTTTTGACCCATT CTCCGAAGTATTCGTCAGTATGTGAGCCTCTGTTTCCAGAAGTCAAAGTT AACAAAAGGTATCCTCACGTACCTTGGACTTGTCCGATGTTTTGCCTTTT GTGTCGGTGGGTGGATCCGGTTGGTCAGCGTGGCTCTCCTATCCGACGAA GTGAAACTCCAGATTGCACCTCTCAAGGCGCTACAGCTGGAGCTAGCGCA GACGAGATCCGACACGGAAACGATGCGGCAAAGGCTAAAAGAGGAACGCA GAGAGAGCCGGCTCAGGTAAGCATTCTCTCTCTCTCTCTCTCTCTTCCTG CCTCCCTCGGGTACAACGGGTACAACGCACGAGGAGGGTGGACAGCCTCT GTTGAGGCTAGGGCGGAAATGGCAAGATGTCCTTCCAGTATGGTGTATCA CCACCAACCGTTGCAGAACGCCGCCGGCACATGCATGCCCACGAGGGGGG GGAGCTTCCTGCATTGCAGGGCACATGCTGCGGCAGCAGAAGATATGTAG TGAAAGTATTTTATGCGCTTTTGCGCCAAACTTGATTGAATTTGTTCGGG ACTCGTTGCAGGGTCGGCGACAGCGACAAGGCTAGGAGCGAGGCCCAGCA GCGGATAGAAGTGCTTGAGTTCGACCTCAATGAGACCGCAAAGGCGTGTC AGGTGAGCATATGTTGGTGCCATTAAGTACCTTGCTAACGGTTCAAGAAA ACAGTCGCCCACCTGCCAGATTATTTATGGTCCCAACGCGAATGCCATAT TACGGCCGGGCAGAAGATCAAGTGGATAGAGAGGTAAGATATTAGGACGA AATACACGGTAGGACACGTCGGTTGTATATTACATGTACTGAAGCCCTCG TTTTCCAAGCACGAAGGTTACCAATACCTACAACTTTCCTCCCTCCGCAC GATACGGCGCTTCCAGCGAGAAAGCTTGAAGGCGTCGACATTCGAGGGGA TGTACCAAGAGGCTTCCACGACGGCCACGCTTCTCCAAGCAGAAGTAGAA CAGTGCAGAACAGACGCCAAAATGATAGCGCAGGAGGTGAGTACGTGTTA CGGGTGGTAGTTCTTTCACGTGAGTGGTAGGTGGAATGTGTGTAGTAGCT CTCGAGCCGTCTCACTGTTGTGCCTTTTTGGCATGAAGTTCGTGGAGGAT GCGGGCAGTTTCCTCATTGCCTCTTTGGATGTTCGTGTGTGCCCTGTTAG GGTAGCTAGTCTCTGACACAACGGAAGACGTCCGTGTCGATTGGACCGGT ACGGGTGTAAGAAGGTACTCTGCGAGGTCGCAACAACAATGAATGATGGT ACGACAACAATGGCTCGCAAGGCAAGGCTACCACTTCATTTTTTCAGAGC GATGGAAATGCCAACAGAAGTGACGGCTGGCAAATTCCGTGCATGAGTAT AGGCACATCAATGTGGAATCTGGCGTATCGCTTGTGAGGCGAAGATGTCG GTAGGTGGACGGGATCATGATCGCCGAAAACGGCTTCGATGCCTAATTCC TCAATATCTCGTTCACCCCGTGCATGCATGTGCATTCCCTCTGGTGCATT CCCGTTCACCCCTGTTTACCAGCTTACGCGGATGCAGATCGAAAGCGAAA ATAGCAGCCCCTTGGCGGGCTTGACACCCTCCTTGGCTTTGTCCTCACCC ATTGACGTTGGAAGGGCTGTGAGTGGGGCTGAGGGTGAAGAGGTGACGAA AGGGAAATTGGGGGAGGAGCAGGAGGCTGAAACCACATCTCTGAAGAAAA CCATTACGCAGCTGGAATCGGATAAATCAGAATCTGGTGGCGCAATGAAG AATTCGTTAGAGGCGCATCGTCTTGAGCGTGAGGAGCGGGAGCAGGCGTT CAAGGAGACGCAGAAAAGGTGGGTGACTTCTGGTTTGTGTCGTCAATGTT TGCCCATATGGAAAGACAAGAGAGGAATGCCAACCTTAACCTTCGTTTCT TGCAAAAAACGAAATATATGGAAGGTCGAAGGCTTGCTTCCAGTTTTCAG GGCAGCGAGATGCGCCGTTGGCATATATATGTCGTGGCGGTAGGAAAGGG GTGGTGGTTGTACGAAAGGGCGCGTATGCTCCGGGGCTTTTTCAACACAC ATGCGAAACTGTTATGAGAAACACGAAGTAATCCTGGCATATCATTACGG TCGTTCGGAGACAGGCGAATGATAAAACGAGTATGTCGAGCAAGCATCTG ATGTTAGCTAACTACGCTTAAGCTGCCCGCACATCCAACACCGGGCACGC TCCGTATAAAACCTATGTAGTACAGCAGTCGTGGCACCGTCGACTACGCC CGGTGCTCGAATTCTAACCTCCAGTCATTGCTTGTCCTTGTCGCAACCTC ACCCCATCCGACACCCCGCTCCAAGAGCTGACTCCCTCGCTGAAGAGAAC AGTCGCCTACGTGCTACCATCGAGAAGCAAGAGGCAGAAAGCGAGAGGCA GCGAGAGGAACAGGACGAGCGTCACGACCGCGACATCAAACGGGAGATTA TCTTGTCCCAGCAGAACCTGGACTCGGCGTCATTGAGAGACAGACTGTGC CGGACCTTGGACGAACTGTGCGGGGCGGAGGAGGCCGGGGAGCTGGCGCT GACTTGCCAGAGGTGCGCAAAGCTCTTCAAGGATCCTCACACCATGGCAC CTTGCGGGCACACCTTGTGCGCGGGTTGTTGTGCGGGTGGCGATGGAGGC ATGCCAGCTGAGGACGGTAATGGAAGGGTGCCTGGGGGTAGCGGCGAGAG CCCAGGCTCGGCCACGCATAAGAAGCCGGAGTGCTATCTGTGTGGGCAGC ACGAGGGCGAGGCTGCGGACAGGGTGGTTTGCGTCGGGATGGCGCCGAAC CGTGCCTTGGCGAGTGTGGTGGTCAAGTTTGCCTTCCGTCGCCAGCTTGT GCGAACCTTGAAGGAAATCGGCGCTGCGCTGTCGGGGTAAGGCTCCGTGC CCCCCGAGAGAGGTACATTTTTCGTAGACTTGGCCGTGCTGCATGTGTCG GGAGGGCTTTGTGGCTTGAAAATGGTTGGTGCTACTGAACTG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig958:77..4618+

>mRNA_E_fasciculatus_S2_contig958.17599.1 ID=mRNA_E_fasciculatus_S2_contig958.17599.1|Name=mRNA_E_fasciculatus_S2_contig958.17599.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1485bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig958:77..4618+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTGTCACGGCCGGCAGGCTAGCATCAGAACCCCGGCAGAGACCCGA
AAATGCCGTGGCGCAACCATCGGAGCAAGAGACGCTGGAGACGGAGAGGG
CGGTGGCTGCCATGGGAGCCAAACACACCGAACAACAACTTCTGCGTGCT
AGCCGAGATGTTCGGGGGCAGCTGGAGCGCGCCCTTCAAGAGGCCGAAGC
CCTTCGTGCCGACAACATCGCATTCAAAACCAGAGTCAACCTCGCAGAAA
AGGAAAAGGCACACCTAGAGACGCGCGTGGCTCTCCTATCCGACGAAGTG
AAACTCCAGATTGCACCTCTCAAGGCGCTACAGCTGGAGCTAGCGCAGAC
GAGATCCGACACGGAAACGATGCGGCAAAGGCTAAAAGAGGAACGCAGAG
AGAGCCGGCTCAGGGTCGGCGACAGCGACAAGGCTAGGAGCGAGGCCCAG
CAGCGGATAGAAGTGCTTGAGTTCGACCTCAATGAGACCGCAAAGGCGTG
TCAGCGAGAAAGCTTGAAGGCGTCGACATTCGAGGGGATGTACCAAGAGG
CTTCCACGACGGCCACGCTTCTCCAAGCAGAAGTAGAACAGTGCAGAACA
GACGCCAAAATGATAGCGCAGGAGCTTACGCGGATGCAGATCGAAAGCGA
AAATAGCAGCCCCTTGGCGGGCTTGACACCCTCCTTGGCTTTGTCCTCAC
CCATTGACGTTGGAAGGGCTGTGAGTGGGGCTGAGGGTGAAGAGGTGACG
AAAGGGAAATTGGGGGAGGAGCAGGAGGCTGAAACCACATCTCTGAAGAA
AACCATTACGCAGCTGGAATCGGATAAATCAGAATCTGGTGGCGCAATGA
AGAATTCGTTAGAGGCGCATCGTCTTGAGCGTGAGGAGCGGGAGCAGGCG
TTCAAGGAGACGCAGAAAAGAGCTGACTCCCTCGCTGAAGAGAACAGTCG
CCTACGTGCTACCATCGAGAAGCAAGAGGCAGAAAGCGAGAGGCAGCGAG
AGGAACAGGACGAGCGTCACGACCGCGACATCAAACGGGAGATTATCTTG
TCCCAGCAGAACCTGGACTCGGCGTCATTGAGAGACAGACTGTGCCGGAC
CTTGGACGAACTGTGCGGGGCGGAGGAGGCCGGGGAGCTGGCGCTGACTT
GCCAGAGGTGCGCAAAGCTCTTCAAGGATCCTCACACCATGGCACCTTGC
GGGCACACCTTGTGCGCGGGTTGTTGTGCGGGTGGCGATGGAGGCATGCC
AGCTGAGGACGGTAATGGAAGGGTGCCTGGGGGTAGCGGCGAGAGCCCAG
GCTCGGCCACGCATAAGAAGCCGGAGTGCTATCTGTGTGGGCAGCACGAG
GGCGAGGCTGCGGACAGGGTGGTTTGCGTCGGGATGGCGCCGAACCGTGC
CTTGGCGAGTGTGGTGGTCAAGTTTGCCTTCCGTCGCCAGCTTGTGCGAA
CCTTGAAGGAAATCGGCGCTGCGCTGTCGGGGTAA
back to top