mRNA_E_fasciculatus_S2_contig9570.17586.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9570.17586.1
Unique NamemRNA_E_fasciculatus_S2_contig9570.17586.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9570.17586.1 vs.
Match: PAP_fibrillin (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU6_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 6.650e-29
Identity = 67/80 (83.75%), Postives = 69/80 (86.25%), Query Frame = 3 
Query:   15 MKVQACLAALAATASMCGAFVPALVSCRDGVRAPHAHHRPSSASPLRSSSS-PADAVDAFPSDVSPDLDDASSSSYTPPA 251
            MK+QACLAALAAT + CGAFVPALVSCRDGVRA HAHHRPSSASPLRSSSS PADAVDAFPSDVSPD      SS TPPA
Sbjct:    1 MKLQACLAALAATVNTCGAFVPALVSCRDGVRASHAHHRPSSASPLRSSSSSPADAVDAFPSDVSPDA-----SSSTPPA 75
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9570.17586.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PAP_fibrillin6.650e-2983.75domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9570contigE_fasciculatus_S2_contig9570:3083..4607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size254
Hectar predicted targeting categorychloroplast
Exons2
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.7256765-UTR-E_fasciculatus_S2_contig9570:3082..30961696842603.7256765-UTR-E_fasciculatus_S2_contig9570:3082..3096Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9570 3083..3096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.7430243-CDS-E_fasciculatus_S2_contig9570:3096..31931696842603.7430243-CDS-E_fasciculatus_S2_contig9570:3096..3193Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9570 3097..3193 +
1696842603.7527766-CDS-E_fasciculatus_S2_contig9570:4464..46071696842603.7527766-CDS-E_fasciculatus_S2_contig9570:4464..4607Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9570 4465..4607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9570.17586.1prot_E_fasciculatus_S2_contig9570.17586.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9570 3097..4607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9570.17586.1

>prot_E_fasciculatus_S2_contig9570.17586.1 ID=prot_E_fasciculatus_S2_contig9570.17586.1|Name=mRNA_E_fasciculatus_S2_contig9570.17586.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=80bp
MKVQACLAALAATASMCGAFVPALVSCRDGVRAPHAHHRPSSASPLRSSS
SPADAVDAFPSDVSPDLDDASSSSYTPPAG
back to top

mRNA from alignment at E_fasciculatus_S2_contig9570:3083..4607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9570.17586.1 ID=mRNA_E_fasciculatus_S2_contig9570.17586.1|Name=mRNA_E_fasciculatus_S2_contig9570.17586.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1525bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9570:3083..4607+ (Ectocarpus fasciculatus EfasUO2)
CACACAGCACAGCAATGAAGGTACAAGCTTGCCTCGCTGCGCTTGCAGCA
ACTGCCAGCATGTGCGGCGCTTTCGTGCCTGCGCTGGTGAGCTGCCGTGA
TGGTGTTAGAGGTGAGAGCTCTCGTCTCCTCGTTTTGTTTTCGTCGCTGT
AGTATGAGCAGCAGCTGAACCGCAGCATCTCTATTCCGCTACACACATAC
CCTACGACACTGCTGTTGCTCAGAATGAGACCCCTGAGCATGCTGTGAGT
GCGAGAGCAACTGGAAGGCACAGCGGTTTGCTGGGCTGGGGTGTGGTTCC
TTGACACCGCACACACGGGCACTCACACCCTTCCTCTCTCGTGACAGTGA
TTTGTCATGCCCTCAAGTGATGAGGATCGAAGAGATACGTGAATAGCATG
AACAGCCCAGCAGGCGGACACCCGCCAGTTGAAGCCAGCGTGCGCACGAT
TAGACGTGTGAGCGTGTGAATATACGTAGCTAGCACCCTTCATCGACAGC
AATCGTGACAACTTTGCTGAGTTGGGGTAGTAGTTAACCTCAGTAGTGCA
CAGAGGTCCACCTGCGGTGAGAAAAGCAGCCTTGCAGGCACGCTCAGATT
GATCATGATTTCATGATTTCAGTTGTACGCCTTGGGATTGAGGATTGAGG
GCAGGCAAAGAGTACATTGTTCTTGGGGGCGAGTGAATTGTAGAGGAAGA
AAAGACTGCTGTTGCTTTCGCGAGCAAACAGGGGATGGGCTTTGCTGATG
ATCCCTCGTAAGCTCCCACGCGGTCTGCCTCATATCGCAAGACCCTACTG
TGTTCTCTGAAAAGGGAAGTATACATATAATAGGTCTATTATGCATACCA
TTCAAGACAAGGAAGGGTGCCAACGTGCCAACCACCGTAGGGGGCAGCGG
AGACTTGTCTGCTCTCTTTCCGGAACGGGAGAGCTCGTGCAAGAGGGTGA
TGATGCCGACCCCGTCAACCCTTTGACGTGTCCACCTCATACAATAAACC
TGCACTACTGTTGTAGCCCACCCCCCACCCCCCTCCTGGGAAAAATAAAA
AGGAAGGTTCAGGGAGATGTTTGAGGCATGGGATAGGGAGGACAAGGCGG
TATTGTAGCTGTACTGGGGCATAGCGAGTGGGTAGAAAGGCGGAGAGTGA
TATTGATAGGATAGACAAGACTAGGTAAGACATTTTTTAGCCACTTGTGG
CAAAGCAGGAAGGAACGATTGGCCATCGGTGATCGGTCCTCCTGTGGGAA
CAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATCTATAACGGCTACGGC
ATGCAAAACATCACAGTACGCCGCCCCGCGCGCGCCCAATGCCCCCTCCC
CCCCCCCGTCCTGGTACCACGCTCGCTTCCAGCGCCACACGCTCACCACA
GGCCCAGCAGCGCATCTCCCCTGAGATCATCCTCGTCACCAGCAGACGCC
GTCGACGCCTTCCCTTCCGACGTCTCCCCGGACCTCGACGACGCCTCCTC
CTCTTCCTATACACCGCCCGCCGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9570:3083..4607+

>mRNA_E_fasciculatus_S2_contig9570.17586.1 ID=mRNA_E_fasciculatus_S2_contig9570.17586.1|Name=mRNA_E_fasciculatus_S2_contig9570.17586.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=240bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9570:3083..4607+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGGTACAAGCTTGCCTCGCTGCGCTTGCAGCAACTGCCAGCATGTG
CGGCGCTTTCGTGCCTGCGCTGGTGAGCTGCCGTGATGGTGTTAGAGCGC
CACACGCTCACCACAGGCCCAGCAGCGCATCTCCCCTGAGATCATCCTCG
TCACCAGCAGACGCCGTCGACGCCTTCCCTTCCGACGTCTCCCCGGACCT
CGACGACGCCTCCTCCTCTTCCTATACACCGCCCGCCGGG
back to top