mRNA_E_fasciculatus_S2_contig955.17565.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig955.17565.1
Unique Name	mRNA_E_fasciculatus_S2_contig955.17565.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: HTH (La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.580e-32
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1

Query:    1 APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 189
            APPVEELPEDTKAALV+QVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKK+SK
Sbjct:   81 APPVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKMSK 143

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: HTH (La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.050e-32
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1

Query:    1 APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 189
            APPVEELPEDTKAALV+QVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK
Sbjct: 1162 APPVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 1224

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: Predicted (protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3J9_MICPC)

HSP 1 Score: 78.2 bits (191), Expect = 1.970e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1

Query:    1 APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 189
            AP  + L  + K  +  QVEFYFSD NLPTDAF+ KKV+AGG +GWVPL VICSF ++K+L K
Sbjct:   67 APAPKPLTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLK 129

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TLI1_MICPS)

HSP 1 Score: 78.2 bits (191), Expect = 2.040e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1

Query:    1 APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 189
            AP  + L  + K  +  QVEFYFSD NLPTDAF+ KKV+AGG +GWVPL VICSF ++K+L K
Sbjct:   46 APAPKPLTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLK 108

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DEM4_MICPS)

HSP 1 Score: 69.7 bits (169), Expect = 1.700e-12
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1

Query:    4 PPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGA-QGWVPLKVICSFPKVKKLSK 189
            P +  L ++ +A +  QVEFYFSD NLPTDAF+ KKVKA    QGWVP++V+C F ++K+L K
Sbjct:   62 PSLRPLTDEQRAKITTQVEFYFSDANLPTDAFLLKKVKADKQKQGWVPIQVVCGFNRMKQLLK 124

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XGB4_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 1.040e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1

Query:   16 ELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 189
            EL  + +  +++QVEFYFSD NLPTDAF+ KK      +GWVPL VIC F ++K+L K
Sbjct:  104 ELTPEQRGKILKQVEFYFSDANLPTDAFLMKKA-GSNQEGWVPLGVICGFNRMKQLLK 160

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: Lupus (la ribonucleoprotein n=7 Tax=Solanum TaxID=4107 RepID=M1BWH2_SOLTU)

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-10
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1

Query:   19 LPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 189
            L +D +  +V+QVE+YFSDENLPTD F+ K V     +G+VP+KVI SF KVKKL+K
Sbjct:   58 LTDDLRNKIVKQVEYYFSDENLPTDKFLLKYVTRD-KEGFVPMKVIASFRKVKKLTK 113

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: la-related (protein 6A-like isoform X1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A158E)

HSP 1 Score: 63.9 bits (154), Expect = 2.210e-10
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1

Query:    7 PVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKL 183
            PV  L ED +  +VRQVE+YFSDENLP D F+ K++K   A G+VP+ +I SF K+KKL
Sbjct:   87 PVNTLSEDLRGKIVRQVEYYFSDENLPADKFLLKQMKKDKA-GFVPIALIASFRKMKKL 144

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: la-related (protein 6A-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5X551_DURZI)

HSP 1 Score: 63.5 bits (153), Expect = 2.990e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1

Query:   19 LPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 189
            L +D K  +++QVE+YFSDENLPTD FM   VK    +G+VP+ VI SF K+KKLS+
Sbjct:   82 LTDDLKNKIIKQVEYYFSDENLPTDKFMTSLVKKN-KEGFVPISVISSFRKMKKLSR 137

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Match: HTH (La-type RNA-binding domain-containing protein n=4 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DDH8_AQUCA)

HSP 1 Score: 63.5 bits (153), Expect = 3.030e-10
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1

Query:   19 LPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKL 183
            L +D K  ++RQVE+YFSDENLPTD F+ K VK   A G+VP+ V+ SF K+KKL
Sbjct:   76 LTDDLKEKIIRQVEYYFSDENLPTDKFLMKYVKKDKA-GYVPVAVVASFRKMKKL 129

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
HTH	1.580e-32	96.83	La-type RNA-binding domain-containing protein n=1 ...	[more]
HTH	2.050e-32	98.41	La-type RNA-binding domain-containing protein n=1 ...	[more]
Predicted	1.970e-15	60.32	protein n=1 Tax=Micromonas pusilla (strain CCMP154...	[more]
Hypothetical	2.040e-15	60.32	protein (Fragment) n=1 Tax=Micromonas pusilla TaxI...	[more]
Hypothetical	1.700e-12	53.97	protein (Fragment) n=1 Tax=Micromonas pusilla TaxI...	[more]
Hypothetical	1.040e-10	53.45	protein (Fragment) n=1 Tax=Mantoniella antarctica ...	[more]
Lupus	2.200e-10	57.89	la ribonucleoprotein n=7 Tax=Solanum TaxID=4107 Re...	[more]
la-related	2.210e-10	55.93	protein 6A-like isoform X1 n=2 Tax=Dioscorea cayen...	[more]
la-related	2.990e-10	56.14	protein 6A-like n=1 Tax=Durio zibethinus TaxID=666...	[more]
HTH	3.030e-10	58.18	La-type RNA-binding domain-containing protein n=4 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig955	contig	E_fasciculatus_S2_contig955:24432..25368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	127.5
Seed ortholog evalue	2.2e-27
Seed eggNOG ortholog	2880.D7FTW6
Preferred name	LARP6
Model size	189
KEGG ko	ko:K15191,ko:K18733
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006417,GO:0008092,GO:0008150,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010712,GO:0010714,GO:0017022,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032965,GO:0032967,GO:0032991,GO:0034248,GO:0034250,GO:0035613,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097159,GO:1901363,GO:1902415,GO:1902416,GO:1905214,GO:1905216,GO:1990825,GO:1990904,GO:2000112
Exons	2
EggNOG free text desc.	RNA processing
EggNOG OGs	COG5193@1,KOG1855@2759
Cds size	189
COG Functional cat.	JO
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03019,ko03021

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842601.839159-CDS-E_fasciculatus_S2_contig955:24431..24564	1696842601.839159-CDS-E_fasciculatus_S2_contig955:24431..24564	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig955 24432..24564 +
1696842601.8526423-CDS-E_fasciculatus_S2_contig955:25312..25368	1696842601.8526423-CDS-E_fasciculatus_S2_contig955:25312..25368	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig955 25313..25368 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig955.17565.1	prot_E_fasciculatus_S2_contig955.17565.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig955 24432..25368 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig955:24432..25368+
coding sequence from alignment at E_fasciculatus_S2_contig955:24432..25368+

protein sequence of mRNA_E_fasciculatus_S2_contig955.17565.1

>prot_E_fasciculatus_S2_contig955.17565.1 ID=prot_E_fasciculatus_S2_contig955.17565.1|Name=mRNA_E_fasciculatus_S2_contig955.17565.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=63bp
APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLK
VICSFPKVKKLSK

mRNA from alignment at E_fasciculatus_S2_contig955:24432..25368+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig955.17565.1 ID=mRNA_E_fasciculatus_S2_contig955.17565.1|Name=mRNA_E_fasciculatus_S2_contig955.17565.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=937bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig955:24432..25368+ (Ectocarpus fasciculatus EfasUO2)
GCACCACCCGTGGAAGAACTGCCCGAGGATACCAAGGCGGCGCTGGTGAG
GCAGGTGGAGTTTTACTTCAGCGACGAGAACCTGCCCACGGACGCCTTCA
TGAAGAAAAAGGTTAAGGCCGGCGGCGCGCAAGGTAATAAACCTCACGTA
CTACATGTAGGATGTCTGTCGCGGTCTAACCTTCAACCTTGAGGGACGGT
TAGCTCTTGTCCACCTGCTTTTTGTATGGGGGAATAATAGGTGCTGCTGA
GACTTGTGGGAATCGTGCCTACAGCAGAACTCGTGTATTTTGACACCCTG
TGGCAACGGTTCTGGTCGGCGGAAACTCACTACTGTCGTCGAGAAATCTG
GTGTAGACGCACGTTCCAGGGCGGGGTGGTGTCATGGCCCCTGTACCTTG
CGCTGCAGCGGGAGCTGCGATGCTCCATGGTTTGGCGACTGCGAAAAGAA
GACCCTCCACGAAACCCACATGTGTCGTTGGCTATATATATTCTCCTGTT
AAGATCCAAGTGTGCTCTTCGCCGACGCCTTCCTACACCCCGCCAAACCT
AAAGAGACGCGATCCCTGCGTCCGTTGCCACTACGGGCAGTCTGAGTGGC
GCCAAGTGTTCGGCAGATAACAGGAAGGCGTTTTGGCTATTTGCCGTATC
TCTCTAGCCGATTAGGGGACTGTCGACCCGGGTAAGCGACCCATGATCTG
AATACCTCTCTTGTGGAGATGTTCTTGCCACGCCGTGCGGTCGGAAGCGC
TACAAAAGCTTTCGCCCGTTTTGGCCCGGGCTACGCCCTTGCTTGCACGC
CAGGAAGAGATTTCGAAGCTATAGCTCCCCCCCTCCACTCAACTATTCGC
TGGCTGTTTCTTGCCTTGGGGTATAACACAGGCTGGGTGCCGCTCAAGGT
GATCTGTAGCTTCCCGAAGGTGAAGAAGCTGTCGAAG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig955:24432..25368+

>mRNA_E_fasciculatus_S2_contig955.17565.1 ID=mRNA_E_fasciculatus_S2_contig955.17565.1|Name=mRNA_E_fasciculatus_S2_contig955.17565.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=189bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig955:24432..25368+ (Ectocarpus fasciculatus EfasUO2)
GCACCACCCGTGGAAGAACTGCCCGAGGATACCAAGGCGGCGCTGGTGAG
GCAGGTGGAGTTTTACTTCAGCGACGAGAACCTGCCCACGGACGCCTTCA
TGAAGAAAAAGGTTAAGGCCGGCGGCGCGCAAGGCTGGGTGCCGCTCAAG
GTGATCTGTAGCTTCCCGAAGGTGAAGAAGCTGTCGAAG