prot_E_fasciculatus_S2_contig955.17565.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig955.17565.1
Unique Nameprot_E_fasciculatus_S2_contig955.17565.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length63
Homology
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: D7FTW6_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.580e-32
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 63
            APPVEELPEDTKAALV+QVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKK+SK
Sbjct:   81 APPVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKMSK 143          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.050e-32
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 63
            APPVEELPEDTKAALV+QVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK
Sbjct: 1162 APPVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 1224          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: C1N3J9_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3J9_MICPC)

HSP 1 Score: 78.2 bits (191), Expect = 1.970e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0
Query:    1 APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 63
            AP  + L  + K  +  QVEFYFSD NLPTDAF+ KKV+AGG +GWVPL VICSF ++K+L K
Sbjct:   67 APAPKPLTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLK 129          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: A0A7R9TLI1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TLI1_MICPS)

HSP 1 Score: 78.2 bits (191), Expect = 2.040e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0
Query:    1 APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 63
            AP  + L  + K  +  QVEFYFSD NLPTDAF+ KKV+AGG +GWVPL VICSF ++K+L K
Sbjct:   46 APAPKPLTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLK 108          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: A0A7S0DEM4_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DEM4_MICPS)

HSP 1 Score: 69.7 bits (169), Expect = 1.700e-12
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 0
Query:    2 PPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGA-QGWVPLKVICSFPKVKKLSK 63
            P +  L ++ +A +  QVEFYFSD NLPTDAF+ KKVKA    QGWVP++V+C F ++K+L K
Sbjct:   62 PSLRPLTDEQRAKITTQVEFYFSDANLPTDAFLLKKVKADKQKQGWVPIQVVCGFNRMKQLLK 124          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: A0A7S0XGB4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XGB4_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 1.040e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    6 ELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 63
            EL  + +  +++QVEFYFSD NLPTDAF+ KK      +GWVPL VIC F ++K+L K
Sbjct:  104 ELTPEQRGKILKQVEFYFSDANLPTDAFLMKKA-GSNQEGWVPLGVICGFNRMKQLLK 160          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: M1BWH2_SOLTU (Lupus la ribonucleoprotein n=7 Tax=Solanum TaxID=4107 RepID=M1BWH2_SOLTU)

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-10
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0
Query:    7 LPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 63
            L +D +  +V+QVE+YFSDENLPTD F+ K V     +G+VP+KVI SF KVKKL+K
Sbjct:   58 LTDDLRNKIVKQVEYYFSDENLPTDKFLLKYVTRD-KEGFVPMKVIASFRKVKKLTK 113          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: UPI00192A158E (la-related protein 6A-like isoform X1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A158E)

HSP 1 Score: 63.9 bits (154), Expect = 2.210e-10
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    3 PVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKL 61
            PV  L ED +  +VRQVE+YFSDENLP D F+ K++K   A G+VP+ +I SF K+KKL
Sbjct:   87 PVNTLSEDLRGKIVRQVEYYFSDENLPADKFLLKQMKKDKA-GFVPIALIASFRKMKKL 144          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: A0A6P5X551_DURZI (la-related protein 6A-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5X551_DURZI)

HSP 1 Score: 63.5 bits (153), Expect = 2.990e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    7 LPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK 63
            L +D K  +++QVE+YFSDENLPTD FM   VK    +G+VP+ VI SF K+KKLS+
Sbjct:   82 LTDDLKNKIIKQVEYYFSDENLPTDKFMTSLVKKN-KEGFVPISVISSFRKMKKLSR 137          
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Match: A0A2G5DDH8_AQUCA (HTH La-type RNA-binding domain-containing protein n=4 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DDH8_AQUCA)

HSP 1 Score: 63.5 bits (153), Expect = 3.030e-10
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    7 LPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKL 61
            L +D K  ++RQVE+YFSDENLPTD F+ K VK   A G+VP+ V+ SF K+KKL
Sbjct:   76 LTDDLKEKIIRQVEYYFSDENLPTDKFLMKYVKKDKA-GYVPVAVVASFRKMKKL 129          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig955.17565.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTW6_ECTSI1.580e-3296.83HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JW40_9PHAE2.050e-3298.41HTH La-type RNA-binding domain-containing protein ... [more]
C1N3J9_MICPC1.970e-1560.32Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7R9TLI1_MICPS2.040e-1560.32Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0DEM4_MICPS1.700e-1253.97Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0XGB4_9CHLO1.040e-1053.45Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
M1BWH2_SOLTU2.200e-1057.89Lupus la ribonucleoprotein n=7 Tax=Solanum TaxID=4... [more]
UPI00192A158E2.210e-1055.93la-related protein 6A-like isoform X1 n=2 Tax=Dios... [more]
A0A6P5X551_DURZI2.990e-1056.14la-related protein 6A-like n=1 Tax=Durio zibethinu... [more]
A0A2G5DDH8_AQUCA3.030e-1058.18HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 9..63
e-value: 1.6E-7
score: 36.9
IPR006630La-type HTH domainPFAMPF05383Lacoord: 15..62
e-value: 2.6E-21
score: 75.4
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 5..63
score: 21.346
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 4..63
e-value: 2.0E-20
score: 74.4
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 8..62
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 6..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig955contigE_fasciculatus_S2_contig955:24432..25368 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig955.17565.1mRNA_E_fasciculatus_S2_contig955.17565.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig955 24432..25368 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig955.17565.1 ID=prot_E_fasciculatus_S2_contig955.17565.1|Name=mRNA_E_fasciculatus_S2_contig955.17565.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=63bp
APPVEELPEDTKAALVRQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLK
VICSFPKVKKLSK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR036388WH-like_DNA-bd_sf
IPR006630La_HTH