mRNA_E_fasciculatus_S2_contig944.17477.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E0_9PHAE) HSP 1 Score: 531 bits (1368), Expect = 2.620e-173 Identity = 279/310 (90.00%), Postives = 291/310 (93.87%), Query Frame = 1
Query: 1 MGGPPADGYGAGGMLEGGGGGGFSGQGAVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQQVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEVRGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALRQMLTSQLDGSSGGGGAVGEIVGAGGVGA 930
MGGP A GYG ML+ GGG QG VGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGV+HEYRSSQGRLTLYLYNLAAAPLTDLRLGVPS+PYLRSQIGQGP GLDVGGRAQQVLMCECLQPF EAPAL+VSFL+EGRPHSFELTLPLSVCSFIEPLQLEA DFARRWEMLGNASKEENGEVWAG PVTAARWAEVRGMVTSA+KMGITEGPDSTS+SNDSGT+LRAAG+LRTGSL PQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAV +RQ+L SQLDGSSGGGGAVGE+VGAGGVGA
Sbjct: 937 MGGPSAGGYGGXXMLQXXEGGGLGEQGVVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVIHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSMPYLRSQIGQGPSGLDVGGRAQQVLMCECLQPFPEAPALTVSFLMEGRPHSFELTLPLSVCSFIEPLQLEAHDFARRWEMLGNASKEENGEVWAGVPVTAARWAEVRGMVTSAIKMGITEGPDSTSHSNDSGTSLRAAGSLRTGSLNPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVGIRQLLISQLDGSSGGGGAVGEVVGAGGVGA 1246
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: AP-2 (complex subunit alpha n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIT0_PYTIN) HSP 1 Score: 161 bits (408), Expect = 1.250e-38 Identity = 103/276 (37.32%), Postives = 155/276 (56.16%), Query Frame = 1
Query: 52 GGGGGFSGQGAVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQ--QVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEVRGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALRQMLTSQLDG 873
GGGG + G +G+ P ++ +V W R LM++ +G+LFE ++IGV HEYR SQGR+ L+ N A L ++ V + P R Q + P VGG+ Q Q +M E + PF PAL VSF G + L LP +F+EP++L EDF +RW L E+ V + + A+ R +T ++K+ EG D+ +GT++ AA T RTG+ P G KIS+G ++R+E S ++RI+VRAVH V++A++ L + L G
Sbjct: 681 GGGGPAASGGVIGMDPALEPKVREWSRGLMLAPQGVLFENDVLQIGVKHEYRGSQGRVGLFFGNKTADTLNAFKVAVETTPAFRLQCEEVPAS--VGGKQQVKQQIMIEAMAPFIAPPALKVSFSRGGXSXQYXLALPSHAVAFLEPVKLXGEDFMKRWGALEGQDXEQQEVVTSTLKMD---MAQTRKWLTESIKLAPAEGLDA------AGTSVTAAATFRTGTAAPNGDKISVGCLVRVEANTMSNSYRITVRAVHKDVSLAVKNDLKAVLVG 945
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: AP-2 (complex subunit alpha n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYF2_9STRA) HSP 1 Score: 160 bits (405), Expect = 3.000e-38 Identity = 105/279 (37.63%), Postives = 164/279 (58.78%), Query Frame = 1
Query: 67 FSGQGAVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQ--QVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGA----PVTAARWAEVRGMVTSAMKMGITE-GPDSTSNSNDS-----GTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALRQMLTSQL 867
F + GV P AQ+SAW ++ +++G+L+E ++IGV E+R SQGRL+L+ N + APLT + V V +LR Q + +VG + Q Q +M EC+QPF L+V++ L G+PH+F++ LP SF+EP++L A+D+A+RW L +E+ EV+A A PV + M+ MK G+ E G +S+S +++S L A T RTG+ P G K+S+GA+++LE A+ ++R++VRAVH V+ AL+ L L
Sbjct: 666 FGAPSSPGVDP---AQLSAWFFKVVGTNQGVLYESDVLQIGVKQEFRGSQGRLSLFYGNKSGAPLTSVSAAVKPVAFLRVQAEE--LAREVGPKQQLKQQIMVECMQPFVSPAELTVAYTLNGQPHTFDVKLPCVATSFLEPVKLAADDYAKRWAALEGQGREQQ-EVFAAAAKMDPVATTK------MLVEGMKFGLVEVGIESSSGAHESQGLDPAAGLALAATFRTGTAGPTGEKLSVGALVKLESNAAANSYRLTVRAVHPDVSTALKNNLKGVL 932
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: AP-2 (complex subunit alpha n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BYZ6_SAPPC) HSP 1 Score: 155 bits (393), Expect = 1.050e-36 Identity = 95/255 (37.25%), Postives = 150/255 (58.82%), Query Frame = 1
Query: 109 AQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQ--QVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEVRGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALRQMLTSQL 867
AQ+++W ++ +++G+L+E I+IGV E+R SQGRL+L+ N +A PLT++ V VP+LR Q + +VG + Q Q +M EC+QPF LSV+F L G +F++ LP SF+EP++L +DF +RW L +E+ +V+ A + A V+ ++T MK G+ EG D + L A T RTG+ P G KIS+G + +LE P + ++R++VRAVH V++AL+ + L
Sbjct: 678 AQLASWFNKIVATNQGVLYESDLIQIGVKQEFRGSQGRLSLFYGNKSACPLTNVSASVKPVPFLRVQAEE--LAREVGPKQQLKQQIMLECMQPFVSPAELSVAFTLNGSSVAFDVKLPCVATSFLEPVKLSGDDFQKRWVALEGQGREQQ-DVFVAANKMDVQ-ANVK-LLTEVMKFGLVEGGDPSGG-------LALAATFRTGTTAPTGDKISVGCLAKLESNPQANSYRLTVRAVHPDVSIALKNNIKGVL 920
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: AP-2 (complex subunit alpha n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y914_9STRA) HSP 1 Score: 150 bits (378), Expect = 9.380e-35 Identity = 93/265 (35.09%), Postives = 139/265 (52.45%), Query Frame = 1
Query: 67 FSGQGAVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPY--LRSQIGQGPPGLDVGGRAQQVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEVRGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALRQML 855
FS V + P + +++ W R L++S +G+LFE +++G HEYR SQ R+ L+ N + L R+ V P R Q + P L + +Q L+ EC+ PF PAL VSF H ++L LP +F+EP++L AEDFA+RW L +E V A +P+ A+ R +T ++ + S+ L A TLRTG+ P G K+++G + R+E PAS RI+VRAVH V+VA + L
Sbjct: 709 FSSGEVVPIEPSLAPKLAEWTRGLLLSPQGVLFENDVLQVGAKHEYRGSQARVMLFFGNKTSDALAAFRVAVAPTPAAAFRLQAEEVPAQLAPKQQLKQQLLLECMAPFVAPPALRVSFARGDVQHQYDLALPCHAAAFLEPVKLSAEDFAKRWAALDGTERETQEIVQAASPLD---MAQARQWLTEQLRF---------AESSQGDGALSLAATLRTGTAGPNGDKVAVGCLARVEANPASNAVRITVRAVHRDVSVATKNCL 961
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: AP-2 (complex subunit alpha n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9H6_9STRA) HSP 1 Score: 148 bits (374), Expect = 2.890e-34 Identity = 87/246 (35.37%), Postives = 145/246 (58.94%), Query Frame = 1
Query: 109 AQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQQVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEVRGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALR 846
A+++AW ++ + +G+LFE ++IGV E+R SQGRL+L+ N ++ LT+L + + VPY R+Q+ L + +Q +M EC+QPF L +++ L +P SFEL LP +F+EP++L A+DF +RW L +E+ + A + A+ ++ +K G+ +G D+TS+ L A T RTG+ P G KIS+G +L+LE + ++R++VRAVH V++AL+
Sbjct: 675 AKLTAWFNKIVTTGQGVLFENDFLQIGVKQEFRGSQGRLSLFYGNKSSQSLTNLGVVIKQVPYFRTQVEDVAKELAPKQQLKQQIMVECMQPFVHPAELVINYTLGSQPSSFELKLPCVATNFLEPVKLGADDFNKRWGALEGQGREQQDVFASKADLHASAK-----ILVDTLKFGLVDGADTTSS-------LSLAATFRTGTSAPSGDKISVGCLLKLESQ--GNSYRLTVRAVHPDVSLALK 906
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: AP-2 (complex subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8N4_PLAHL) HSP 1 Score: 148 bits (373), Expect = 4.150e-34 Identity = 91/266 (34.21%), Postives = 146/266 (54.89%), Query Frame = 1
Query: 58 GGGFSGQGAVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQQVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEVRGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALRQML 855
GG S VG+ + Q++AW R LM++ +G+L E ++IG HEYR SQGR+ L+ N + L +L + + + R Q + P L +AQQ +M E + PF+E P +++ F G +S+ + LP SF++P+ L E F +RW L +E+N + A V+ + RG +++++K + +G +T TL A T RTG+++P G KIS+G ++RLE T+RI VRAVH V++A + L
Sbjct: 720 GGDLSNSKPVGLDAALAPQLTAWARHLMLNPQGVLLENDVVQIGAKHEYRGSQGRMNLFYGNKTSDTLNNLSVQLTTGNSFRVQSNEVPSQLAGKQQAQQQIMIEAMAPFTEPPTMTLKFSRNGTNYSYRMALPCQCTSFMDPVALSEEAFTQRWNSLEGHDREQNEVISA---VSKVDMTQARGWLSTSLKFAVVDGLSTTG-------TLLGASTFRTGAVSPNGDKISVGCLVRLEAGD-DNTYRIRVRAVHQDVSLATKNCL 974
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: AP-2 (complex subunit alpha n=14 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FE93_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.300e-33 Identity = 96/262 (36.64%), Postives = 148/262 (56.49%), Query Frame = 1
Query: 61 GGFSGQGAVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQQVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEVRGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALR 846
GG +G +VG A+++AW ++ S++G+LFE I+IGV E+R SQGR+ L+ N + +T+L L V VP LR+Q+ Q L + +Q +M EC+QPF + + V++ + G S +L LP SF+EP++L EDF +RW L +E+ A V A+ ++ MK G+ EG S G +L A T RTG+ +P G KIS+G +L+LE + +FR++VRAVH V+VA++
Sbjct: 665 GGPTGSSSVGNDSVDPAKIAAWFNKVVGSNQGVLFENDVIQIGVKQEFRGSQGRMGLFYGNKGSVAVTNLSLMVKQVPSLRTQVEQVATELQPKQQLKQQIMVECMQPFVQPVEVVVAYTVAGLSTSIDLKLPCVATSFLEPVKLSVEDFHKRWGALEGQGREQQDVFTAKLDVQASAK-----LLVDVMKFGLVEGEVS------GGVSLAA--TFRTGTASPSGEKISVGILLKLESQ--GNSFRLTVRAVHPDVSVAVK 911
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: AP-2 (complex subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFV9_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.500e-32 Identity = 94/259 (36.29%), Postives = 142/259 (54.83%), Query Frame = 1
Query: 79 GAVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQQVLMCECLQPF--SEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEV--RGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVAL 843
G G+P EM+ ++ ++L+ + G+LFE +++G+ H+YR SQG++ L+ N + LTD V YL+ + P + G +A+Q L E ++PF S+AP L +S+ +G+ H +ELTLP+ SF EP+ L A D+ RW L S+E + A + A V R + + + +G D ND +L A G+LRTG+ P G KIS+GA+LR+EV RI+ RAVH TVA AL
Sbjct: 799 GVHGIPEEMRPRLETAFKALITTVSGVLFENDKLQVGIKHDYRGSQGKMVLFYGNKTSEALTDFAASVTKTFYLQMESQDPPKIVAAGEQAKQSLSMEVMKPFDYSDAPELLLSYTFQGQKHLYELTLPIVPTSFFEPVTLAAPDYMARWRSLEGQSRERQEILQQPANFSYDSSALVAFRLKILDGLHLAQAQGLDQ----ND--LSLSAVGSLRTGTAGPDGGKISVGALLRIEVNAQVRAMRITARAVHGTVAAAL 1051
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD63_PYTOL) HSP 1 Score: 142 bits (358), Expect = 3.330e-32 Identity = 91/265 (34.34%), Postives = 143/265 (53.96%), Query Frame = 1
Query: 79 GAVGVPPEMQAQVSAWLRSLMVSDKGILFEGGPIKIGVVHEYRSSQGRLTLYLYNLAAAPLTDLRLGVPSVPYLRSQIGQGPPGLDVGGRAQ--QVLMCECLQPFSEAPALSVSFLLEGRPHSFELTLPLSVCSFIEPLQLEAEDFARRWEMLGNASKEENGEVWAGAPVTAARWAEVRGMVTSAMKMGITEGPDSTSNSNDSGTTLRAAGTLRTGSLTPQGHKISLGAMLRLEVEPASGTFRISVRAVHVTVAVALRQMLTSQL 867
G G+ M+ Q+ W ++L+++ +G+LFE I+IGV HEYR SQGR+ L++ N L++ RL + P ++ V G+ Q Q +M E + PF APAL VSF G + + L LP F+EP++L EDF +RW L +E+ V + + + + +T +KM +G D+ NS + AGT RTG+ P G KIS+G ++R+E + +RI+VRAVH V++A++ L + L
Sbjct: 688 GVHGLDASMEPQLREWTKNLLLNPQGVLFENDIIQIGVKHEYRGSQGRIGLFIGNKTNDTLSNFRLQIEPNPAAAFRLQAEDVPNQVAGKQQVKQQIMIESMAPFVAAPALKVSFSRGGANYLYPLALPCQAVVFMEPVKLSGEDFMKRWNALEGQEREQQEVVTSTQKMD---MTQNKKWLTENIKMAQADGIDTAGNS------ITIAGTFRTGATAPTGDKISVGCLVRVEGNTTTNAYRITVRAVHKDVSIAVKNGLKAIL 943 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig944.17477.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig944.17477.1 >prot_E_fasciculatus_S2_contig944.17477.1 ID=prot_E_fasciculatus_S2_contig944.17477.1|Name=mRNA_E_fasciculatus_S2_contig944.17477.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=311bp MGGPPADGYGAGGMLEGGGGGGFSGQGAVGVPPEMQAQVSAWLRSLMVSDback to top mRNA from alignment at E_fasciculatus_S2_contig944:7384..11161+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig944.17477.1 ID=mRNA_E_fasciculatus_S2_contig944.17477.1|Name=mRNA_E_fasciculatus_S2_contig944.17477.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3778bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig944:7384..11161+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig944:7384..11161+ >mRNA_E_fasciculatus_S2_contig944.17477.1 ID=mRNA_E_fasciculatus_S2_contig944.17477.1|Name=mRNA_E_fasciculatus_S2_contig944.17477.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=933bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig944:7384..11161+ (Ectocarpus fasciculatus EfasUO2)back to top |