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Homology
BLAST of mRNA_E_fasciculatus_S2_contig866.16772.1 vs.
Match: Similar (to Leucine rich repeat containing 15, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG5_ECTSI) HSP 1 Score: 179 bits (453), Expect = 6.660e-54 Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 1
Query: 127 MSDCGLTDDDLDDLRSCLEAAGVSTIVELVLDTNGLTTLKPDVSGSSGTFDGMTSLEVLSLSSNELATLPADLFGSLTSLVSLFVDDNSDLTCLPDVPS 423
MSDCGLT+DDLDD+RSCLEAAGVSTIVEL+LDTNGLT LKPDVSGSSGTFDGMTSLEVLSLS+NEL TLPADLFGSLTSLVSLFVDDNSDLTCLPD+PS
Sbjct: 1 MSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPS 99
BLAST of mRNA_E_fasciculatus_S2_contig866.16772.1 vs.
Match: Hypothetical (leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR92_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 1.160e-15 Identity = 71/220 (32.27%), Postives = 105/220 (47.73%), Query Frame = 1
Query: 64 NSCVDPII-AGKCTIDGDGYLSMSDCGLTDDDLDDLRSCLEAAGVSTIVELVLDTNGLTTLKPDVSGSSGTFDGMTSLEVLSLSSNELA-TLPADLFGSLTSLVSLFVDDNSDLTCLPD----------------------------------------------VPSSDMETVSRSNTDIFNNVCECTPDESIFCDAGLTCQPGETGYTCVTATPSPTP 579
N C+DP A C+++G + + CG+TDDDL+D+ +CL+ G ++ L + N LTT+ P+ G FDG+ LE L L++N L+ TL A+ F +L L L ++ NS LT LP VP+S + V T+I + VC C+ ++ CD GL C PGE G+TC T+ P+P P
Sbjct: 179 NPCLDPASEAYLCSVNGT-EIHLDYCGITDDDLEDVETCLDVLGRGSMTALYVRFNYLTTI-PE-----GLFDGLGHLEKLYLNNNGLSETLSAESFQALGKLQVLNLNGNS-LTALPTDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLRLNPELQCVPASAADNVET--TEISSGVCGCSLAPAVLCDVGLACVPGELGFTCATSAPTPAP 388
BLAST of mRNA_E_fasciculatus_S2_contig866.16772.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY3_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 4.700e-10 Identity = 40/79 (50.63%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 61 VNSCVDPIIAGKCTIDGDGYLSMSDCGLTDDDLDDLRSCLEAAGVSTIVELVLDTNGLTTLKPDVSGSSGTFDGMTSLE 297
VN C+D A +C ID DG L + CG+TD D DDL SCLE AG I L L N LTTL P+ G F G+T+LE
Sbjct: 137 VNVCLDTTDADRCEIDADGQLDLYSCGITDADFDDLASCLEDAGPEAITYLSLSQNELTTL-PE-----GIFGGLTALE 209
BLAST of mRNA_E_fasciculatus_S2_contig866.16772.1 vs.
Match: Hypothetical (leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS0_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 5.360e-9 Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query: 64 NSCVDPIIAGKCTIDGDGYLSMSDCGLTDDDLDDLRSCLEAAGVSTIVELVLDTNGLTTLKPDVSGSSGTFDGMTSLEVLSLSSNELATLPADLF----GSLTSL 366
NSC DP G + + +CG+ D+DL+DLR C E G +++ + +++N LT L G +G F G SL+ L L N + TL AD F GSLTSL
Sbjct: 38 NSCFDPEYDLYGCEPGSTQIDLDNCGIGDEDLEDLRECFENVGRASVTYIAMNSNSLTELP---GGENGLFAGFESLKTLGLVQNNIKTLYADSFEGLGGSLTSL 139
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig866.16772.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
| Match Name | E-value | Identity | Description | |
| Similar | 6.660e-54 | 92.93 | to Leucine rich repeat containing 15, partial n=1 ... | [more] |
| Hypothetical | 1.160e-15 | 32.27 | leucine rich repeat protein n=2 Tax=Ectocarpus Tax... | [more] |
| Uncharacterized | 4.700e-10 | 50.63 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Hypothetical | 5.360e-9 | 39.05 | leucine rich repeat protein (Partial) (Fragment) n... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 88.6 |
| Seed ortholog evalue | 5e-15 |
| Seed eggNOG ortholog | 2880.D8LR92 |
| Model size | 819 |
| Hectar predicted targeting category | signal peptide |
| Exons | 11 |
| EggNOG free text desc. | corticospinal neuron axon guidance through spinal cord |
| EggNOG OGs | COG4886@1,KOG4237@2759 |
| Ec32 ortholog description | Leucine-rich repeat |
| Ec32 ortholog | Ec-28_000190.1 |
| Cds size | 819 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842523.0593207-CDS-E_fasciculatus_S2_contig866:16170..16228 | 1696842523.0593207-CDS-E_fasciculatus_S2_contig866:16170..16228 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 16171..16228 + |
| 1696842523.0716093-CDS-E_fasciculatus_S2_contig866:16579..16643 | 1696842523.0716093-CDS-E_fasciculatus_S2_contig866:16579..16643 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 16580..16643 + |
| 1696842523.0827978-CDS-E_fasciculatus_S2_contig866:17025..17115 | 1696842523.0827978-CDS-E_fasciculatus_S2_contig866:17025..17115 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 17026..17115 + |
| 1696842523.097389-CDS-E_fasciculatus_S2_contig866:17515..17605 | 1696842523.097389-CDS-E_fasciculatus_S2_contig866:17515..17605 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 17516..17605 + |
| 1696842523.1153107-CDS-E_fasciculatus_S2_contig866:17976..18048 | 1696842523.1153107-CDS-E_fasciculatus_S2_contig866:17976..18048 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 17977..18048 + |
| 1696842523.1260056-CDS-E_fasciculatus_S2_contig866:18380..18431 | 1696842523.1260056-CDS-E_fasciculatus_S2_contig866:18380..18431 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 18381..18431 + |
| 1696842523.1369529-CDS-E_fasciculatus_S2_contig866:18846..18899 | 1696842523.1369529-CDS-E_fasciculatus_S2_contig866:18846..18899 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 18847..18899 + |
| 1696842523.1478202-CDS-E_fasciculatus_S2_contig866:19754..19829 | 1696842523.1478202-CDS-E_fasciculatus_S2_contig866:19754..19829 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 19755..19829 + |
| 1696842523.159124-CDS-E_fasciculatus_S2_contig866:20189..20246 | 1696842523.159124-CDS-E_fasciculatus_S2_contig866:20189..20246 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 20190..20246 + |
| 1696842523.1702318-CDS-E_fasciculatus_S2_contig866:20641..20758 | 1696842523.1702318-CDS-E_fasciculatus_S2_contig866:20641..20758 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 20642..20758 + |
| 1696842523.1792543-CDS-E_fasciculatus_S2_contig866:20934..21026 | 1696842523.1792543-CDS-E_fasciculatus_S2_contig866:20934..21026 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig866 20935..21026 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig866.16772.1 >prot_E_fasciculatus_S2_contig866.16772.1 ID=prot_E_fasciculatus_S2_contig866.16772.1|Name=mRNA_E_fasciculatus_S2_contig866.16772.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=273bp
MRLLPCGLAAPFLFGGVAHGVNSCVDPIIAGKCTIDGDGYLSMSDCGLTD DDLDDLRSCLEAAGVSTIVELVLDTNGLTTLKPDVSGSSGTFDGMTSLEV LSLSSNELATLPADLFGSLTSLVSLFVDDNSDLTCLPDVPSSDMETVSRS NTDIFNNVCECTPDESIFCDAGLTCQPGETGYTCVTATPSPTPPPTIPPT PAPVMPPSPAPTPAPLVPTPAPSSPAPTRVPTPAPSPPPIPSFSSSRRAR DTGCIFWTTTAGIFATLFVMNL* back to topmRNA from alignment at E_fasciculatus_S2_contig866:16171..21026+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig866.16772.1 ID=mRNA_E_fasciculatus_S2_contig866.16772.1|Name=mRNA_E_fasciculatus_S2_contig866.16772.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4856bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig866:16171..21026+ (Ectocarpus fasciculatus EfasUO2) ATGCGCCTCCTCCCATGCGGGCTGGCAGCTCCGTTCCTCTTCGGTGGTGT
TGCTCACGGTGAGAAACCTTCCAAATGGTTTCGTGGTGTACAGCACGCGC
ACACCTTCAACCCCCATGAGTTAAGAAACTGAGCCTAAAAAAAAACTTGC
ATAAGAACTTGAGCACCATTTGTGAGCTCGGTTAAGATTCCCAGCCTCTG
CCAAAAAAAGAGGTTCTTAAGTGGTGACGCATTCTGTTCTGCACACGTAT
GCTATGACCGCGCCAAGGGCTCAAATATTTCGATCGTGCTTTGTGTGACC
CGAGGCAGGATTGTTTCGTATGTTACGGCATTGAACGTGCAGCTTTCCTA
CGCTGTAGGAGATGTGATACCTGCTCGTGATCAGCCTGCGACCTTATTCC
TACCTTCAGGTGTGAATTCTTGCGTCGACCCGATTATCGCCGGAAAGTGC
ACGATCGACGGCGATGGTTATCTGTAAGTCTCGGCATCGTTCTTGTCATC
AGGCTTCTGACTTTAAGAGTTTTCTGTCGGCTGTACCCCTAACAACCACC
GCCAAGACCACGCCGGATCAAAAGTGACTGCTGCAAAACTCCTGACCCAC
TATCAGATGCATCACTCTCCCTCGAAACGAAAAATGAAGTGGTGATATTG
GTAGAAGGTCGCTTGTAGCAAAGTAGCTGCTACCGCCGTCCTTTCCGTTA
GGCGCTCTAAGCTGCGTCTTCATCAGCTGAACTTGTAGCGGACGGCCTCA
CGACAGAGCCTCGTCAAACGGACGAGTTGTGTGGTCTTTCGATCAACACA
TCTATCTGACCGATAGCGCTTCGTGATCGTTGAACGTTTTACATGATCCT
CCCAGGTCCATGTCTGATTGCGGGCTGACGGACGACGATCTGGATGACCT
CAGATCGTGCCTAGAAGCTGCTGGAGTATCAACGATAGTAGAACTGTGAG
CCATTTTGCCCCAATGGTTTGGTAAAGGATGTTGACAGGTTTCATGCCAA
AAATTCCGTAGCAATGATCATGTCCACGAAAGAGAGGTGTGTCGGGAGCT
CCGTGGTAGAGACTTGACCTCGACAGCCGGTATGAACGTTGAGAAATGCC
AGAGGGAAAGTGTTTACTTGTACACTCCTCGTGCCATCCGCCAAACCCCT
CTGATTGGGTGATTCATTGGAAACACATGGAAAACGATTGCGCTGAGCTT
CATCACATCCCGCAGCACTTCCAACCTACACCATTCACGTAACTCATGAT
ATTTTTACCCTCACACATCTTCCGGTAAAATGCCAACCCGTGTGTTGTTT
GCTTTCCTGCTATTGCTGCCGCTGCTATTAATTTTGTTGGAACAGGGTTC
TCGACACCAATGGCCTGACAACTCTCAAACCCGACGTGTCGGGGTCATCG
GGAACATTCGACGGCATGACTTCTCTGGAGGTTCTGTAAGTTATCCTCCG
TGTAGCCCTACCTTAGAACTCTCAGAGTGAGCCAGCGTGACAAAGTCAAT
ATGTGAAAACGTGAAAAAGTTGAGCATCCTCGTGGCCAAGGAAGCCGTCT
TAAACTGTCAACGATCGTGTTATTTCGCGGCTCTCCTGGACAGAGAGATA
CCCGTGGAAATATCTGTAGACGGTGTGTGTGGTGATTTTCAATGTCACCG
ACTAGAGAACGACGCAGGTTGCGTAGCTTCATCCGGCGGCGATTTTTCGG
CTGCAGCTCGTCTGCCCGCTCTAAGTATGCGTCGCCTTCGAATCCGCCAC
ACGCGATGCTTGAAATTACTACGACCCGCTGCTGCTGCCCTTCCCCTGTG
TTTCAGTTCTCTATCTTCGAATGAGCTCGCCACGTTGCCCGCTGACCTGT
TTGGAAGCCTCACCTCCCTGGTATCCTTGTGAGTGAGACAGGAAGTCAAT
GTTGTGTGCGAGGGGCACCGTTTATGGATGGGTTCATCGGCAACAGCCTC
AACAACAAAACACGGTTATTCGGGTGAACAACGAAGACCGTTGGAGGAGA
TCACAGAGCATAACACGTTTTCACACGAACAACCTATTTATTCCGGTATC
CGTTGAAAGTAGAACTATCAATCGGCGGGGAGTAACTAGGGTTGACGTTT
CTTCGGCCAACACCACGAGTACGTCGAGGACTCCTTCCACTGCTTAGTTA
TATATCTTCGAATACGTAACAACCCCCCCCCCCATCGTCGCGTGTTCACC
CCTTTGTCAGGTTTGTCGACGACAACAGTGACCTAACCTGTCTCCCCGAC
GTCCCGAGCAGGTAAAGGTTTTGGAGCACACTCGTTTCCGGATAGAGTAG
TCGTTTCCAAGACCCGACGAATAAATGTGTATGCCAAGCCGACCTGTTAA
TGTGCTCGGCGTGTCCAATACGGTGTGATAGACCGCGCATGAAAAACGAC
AGCTCCTGTCGTCAACGCCTACGGTGTAAACACAACCGAGCGGTTGTTGG
TCGACAAGAAGAAGCAGAACGATGACAGATTTAACGGTCGTAGCTCAGCA
AACCTTTCGCCCCCCCTCCTCAAGCAGTTGGTTCGACCACCCGTTGGCCT
CGGCACGGACTGAAGTGGATGCCCGAATGCTCCTCGTCCCGGACGTGCAA
GACCAAAAGACGTACATTAACCGTTTTATCTGTAAATGTTCCTCTCGTTC
CTGCAATGACTTGCGGGCGTGTGCAGCGATATGGAAACTGTTTCCAGGTC
GAACACCGACATATTCAACAATGTGTGCGGTGAGTGCCTGGCGTAAGTAA
AGATGCGACGAACCGATGATGACACACATCTTCGCGTAAAGCGGCGGGTG
ACGACGTATCACGAGTACCGTTTCTCCTGACGCATATGCTGAAATCTACG
TCGAAACGAATAATTCGTTCTCCTATGGGGGGGGGGTGCTTTGCCTGGTA
TTCCCTCGGAACATTTTCGTTGCTTTCACTCTCAGTTAAGCAGTCCCCAA
GCCTACCTCCTTACGAATTCGAAGCGGGGACCAGGCCTGACACTAAAAGT
TGTGCTGCGATTGAAAACCACGTCTGTCAGCTGGTGCACGGCCCAGAGGC
AGTTTATGTTGTCAAGAATGAATCAGCACCAAATATTCTCAACAGACATT
TTGGGGATTGACCTGGTACACTCTCGACCCACATCCTTGTCGAGAAAAGG
CATGAAAGGCAGTCATTCGTGTATCTCAAGTCAATCAAGCGTAGAAATTT
CTTAGCAATCATCAGTGTCACGTTGCGTATTATTTCCGATTCGAATGTAT
CAACATGGTCAATGTCTTCGCTATATCTAGGATTTTCACCCGCTGCCTGG
TATCACTCGAGCTGTGAAACACTATATAGGTTGACCTACCTCGCTTGGGT
TCAGCAGGCCTCATTTTAGATAAGACACTACGATGTTTTGGATTCCTACG
TCTTGGCGGGGATTCTGAGCAATCAAGTCAGACCATCTCCTGTTTGACGT
CCGGTGCAGTACACGCAACACGTTGACCCAGCGATTCCTCCGTTTCGAGG
TCAACCGAGCGACCGACGCCCTAATCTTTACAACGGCCATGCTGTCGCCT
GTCACCGTACGACTACCCGACCACCGCCGGCCAGAATGTACACCTGATGA
ATCAATTTTCTGCGACGCGGGCTTGACCTGCCAACCGGGAGAGACGGGCT
ACACCTGTGGTGAGAAGCACCCTTTTCGCGTGAGTTTTGGTGCTGTAGCG
CCTCTCCCTCGACGTCTTGGGACGGCACGCGCGAGGTCTACCCACACCGC
ACTCATTGATCTCCGGTACAAGTAAATCTGTATGGCTTGCAACGTAGTCC
CTAGCATGCACGCAGCAAATGAAGAATGCTCCAACACCCACGTGTGTTGT
TGAAAGGCGTGGAGCACCATTTTGCCGTGAATTCCTCCGTGAAGTCCGGG
AAAGATCGTCTCATCCATGGGTGGGTAACGGCGACAACAACATTAATCTC
GGTGCTCTTGTGCTCGTGTTTGCTGTGGCGGCAACCGGCTTCCATTCTAT
CTCTCATTGTTCGACATAGTGACGGCGACGCCGTCCCCGACGCCACCTCC
TACCATCCCACCGACTCCGGCTCCCGGTGAGTCCGTCAGATGGCTGGCTG
CCTGTGGCCGATGGATCTTGTAACCTCGATATGCCGACATGTCTCGACGA
TGTTGCTCACCTCGCTTATTTTGGCAGGGCGACGAAACGCATCCGAGGCA
AAATGCCGTACCCTCTTTCATTTGTACCCCGCCACCACTTGAGCTTCTCG
AACTAAACACAAACCGGCGACACAAACCACTGAAATGACAACGGCTTTAT
TTGCCCCACCTAACGGCATTGAAAGGAGTGTGACCAGTGCGCCCACGTCT
CCAACTACCCCGCAACTTGCTCCACCCACCACGGCCACCACCACCCACGA
TACATTGCCCCGCTTGGCCGCCGTTCGTTGTTTTCTCGACCTCCAATCCA
ATCGTGCACGGTGTGCCTCAGTGATGCCACCGTCACCAGCGCCCACTCCG
GCCCCACTGGTGCCTACGCCAGCACCAAGTAGTCCTGCTCCAACGAGGGT
ACCGACACCAGCACCATCACCACCGCCCATACCCAGCTGTGAGTCACGGT
CTAGAGATGATGATAAAACATCAAGTTTCCGGTTGTAGCCTGAGGGTTAG
CCTATCTACATCACATCATGGTGTCCAGAACGAGGCAACGACCCCCTGAC
CCTCTTGCGCCCCTCTGCCCTTGCTGTGCTCACGTGTGTGTATCGCATCA
CACGGTATGCAAAGTTTCTTCCTCACGACGTGCGCGCGACACCGGGTGCA
TCTTCTGGACCACCACGGCCGGCATTTTCGCCACCCTCTTCGTGATGAAT
CTTTAG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig866:16171..21026+ >mRNA_E_fasciculatus_S2_contig866.16772.1 ID=mRNA_E_fasciculatus_S2_contig866.16772.1|Name=mRNA_E_fasciculatus_S2_contig866.16772.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=819bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig866:16171..21026+ (Ectocarpus fasciculatus EfasUO2) ATGCGCCTCCTCCCATGCGGGCTGGCAGCTCCGTTCCTCTTCGGTGGTGT TGCTCACGGTGTGAATTCTTGCGTCGACCCGATTATCGCCGGAAAGTGCA CGATCGACGGCGATGGTTATCTGTCCATGTCTGATTGCGGGCTGACGGAC GACGATCTGGATGACCTCAGATCGTGCCTAGAAGCTGCTGGAGTATCAAC GATAGTAGAACTGGTTCTCGACACCAATGGCCTGACAACTCTCAAACCCG ACGTGTCGGGGTCATCGGGAACATTCGACGGCATGACTTCTCTGGAGGTT CTTTCTCTATCTTCGAATGAGCTCGCCACGTTGCCCGCTGACCTGTTTGG AAGCCTCACCTCCCTGGTATCCTTGTTTGTCGACGACAACAGTGACCTAA CCTGTCTCCCCGACGTCCCGAGCAGCGATATGGAAACTGTTTCCAGGTCG AACACCGACATATTCAACAATGTGTGCGAATGTACACCTGATGAATCAAT TTTCTGCGACGCGGGCTTGACCTGCCAACCGGGAGAGACGGGCTACACCT GTGTGACGGCGACGCCGTCCCCGACGCCACCTCCTACCATCCCACCGACT CCGGCTCCCGTGATGCCACCGTCACCAGCGCCCACTCCGGCCCCACTGGT GCCTACGCCAGCACCAAGTAGTCCTGCTCCAACGAGGGTACCGACACCAG CACCATCACCACCGCCCATACCCAGCTTTTCTTCCTCACGACGTGCGCGC GACACCGGGTGCATCTTCTGGACCACCACGGCCGGCATTTTCGCCACCCT CTTCGTGATGAATCTTTAG back to top
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