mRNA_E_fasciculatus_S2_contig864.16757.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig864.16757.1
Unique NamemRNA_E_fasciculatus_S2_contig864.16757.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Alkylglycerone-phosphate (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE9_ECTSI)

HSP 1 Score: 441 bits (1135), Expect = 7.240e-132
Identity = 220/233 (94.42%), Postives = 229/233 (98.28%), Query Frame = 3
Query:    3 DDISGGLRPMLKSLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARNNFLAAE 701
            DD++GGLRP L+SLVPKAQSAYIRLWKGWGLKETSAVTMVFEGS+QEAALQ+R+VSRIA+SHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVR+RVR+EHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPV VFS LEEAARDEILLAGGSLSHHHGIGKSRAGF SRVSSPVMTDLVLGMKRALDPHNVLGARNNFLAAE
Sbjct: 2269 DDVAGGLRPTLRSLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSRQEAALQKREVSRIAQSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRDRVRKEHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVDVFSGLEEAARDEILLAGGSLSHHHGIGKSRAGFTSRVSSPVMTDLVLGMKRALDPHNVLGARNNFLAAE 2501          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: FAD-binding (PCMH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ5_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.100e-64
Identity = 142/233 (60.94%), Postives = 150/233 (64.38%), Query Frame = 3
Query:    3 DDISGGLRPMLKSLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARNNFLAAE 701
            DD++G LR  ++SLVPKAQSAYI LWKGWGLKETSAVTMVFEGS+QEAALQ+R+VSRIARSHG LSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKV   V                           CV F                                               ASRVSSPV+TDLVLGMKRALDPHNVLGARNNFLAAE
Sbjct: 1830 DDVAGALRSTVRSLVPKAQSAYIWLWKGWGLKETSAVTMVFEGSRQEAALQKREVSRIARSHGALSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVNVLV-------------------------AVCVCF-----------------------------------------------ASRVSSPVITDLVLGMKRALDPHNVLGARNNFLAAE 1990          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Alkyldihydroxyacetonephosphate (synthase n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=UPI001AD0A3E8)

HSP 1 Score: 227 bits (579), Expect = 9.430e-62
Identity = 112/222 (50.45%), Postives = 149/222 (67.12%), Query Frame = 3
Query:   36 KSLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARNNFLAAE 701
            K++  + Q   +  WKG+ +++ +A T+VFEGS+QE   Q+R    +A+ HGGL+GG+S GK GY LTF IAY+RD+ +    + ESFET V W+    LCE V+ R+  E   RG+ G  ++T RVTQLYP G CVYFYLA YA+G+ +P G F+E+E AARDEIL +GGSLSHHHGIGK R  F  RV+SP +      MKRA+DP NV GA N   + +
Sbjct:  378 KAIEGRLQKLVVTKWKGFDVEKMTACTLVFEGSKQEVEAQQRRTYALAKRHGGLAGGSSNGKRGYQLTFGIAYIRDWIMRHHCVAESFETSVPWSQALPLCENVKRRILEESAKRGVPGTPYITCRVTQLYPTGVCVYFYLAFYAKGLADPAGTFAEIELAARDEILRSGGSLSHHHGIGKLRQRFLPRVASPGVLAFARDMKRAVDPTNVFGAANQLFSTD 599          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Oxidase ((Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4Q3KZN6_9DELT)

HSP 1 Score: 214 bits (545), Expect = 1.050e-59
Identity = 109/216 (50.46%), Postives = 140/216 (64.81%), Query Frame = 3
Query:   36 KSLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARN 683
            K L+ + +  Y+   +G+   + +A T+VFEGS +E A+Q + V +IA  HGGL  GA  GK GY LT+ IAY+RDF +   VL ESFET V W+ +  LCE+V++R+ REH  RGL G  F+T RVTQLY  G CVYFY A YA+GV NP  V+S++E AAR EIL +GGSLSHHHG+GK R  F   + S    D     K A+DP NV G  N
Sbjct:  122 KRLLSRLEKLYVTGLRGFVPDKMTACTLVFEGSAEEVAVQEQQVYKIAALHGGLKAGAENGKRGYQLTYGIAYIRDFVMKHHVLAESFETSVPWSRVLELCERVKQRLYREHAARGLPGKPFITCRVTQLYQTGVCVYFYFAFYAKGVANPSQVYSDIEAAARTEILQSGGSLSHHHGVGKLRKRFLPEIMSEACLDWATRSKHAVDPDNVFGCGN 337          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Alkylglycerone-phosphate (synthase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2NSD2_9DELT)

HSP 1 Score: 216 bits (550), Expect = 1.040e-57
Identity = 117/240 (48.75%), Postives = 156/240 (65.00%), Query Frame = 3
Query:    3 DDISGGLRPMLK-------SLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVR-NPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARNNFLAA 698
            D++   L  MLK        L+  A+  Y+   KG+ ++  +A T+VFEGS  E A Q+R    +A+ +GGL+GGA+ G+ GY LTF IAY+RD+ +   ++ ESFET V W+ +  LCE V++R+R EH DRGL G  FVT RVTQLYP GACVYFY A Y +GV  +P  +++E+E AARDE+L  GGSLSHHHGIGK R  F  R++S  +      +KRALDP +V GA N   AA
Sbjct:  356 DNLQFQLSQMLKPRKEGAAKLLSAAEKWYVTRVKGFDVERMAACTLVFEGSAAEVAAQQRRTYAVAKRYGGLAGGAANGERGYQLTFGIAYIRDWIMNHWLIAESFETSVPWSRVLELCEAVKQRIRDEHADRGLPGKPFVTCRVTQLYPTGACVYFYFAFYFKGVPGDPSALYAEIEHAARDEVLRRGGSLSHHHGIGKIRQPFVDRIASAGVRASAREVKRALDPRDVFGACNQLYAA 595          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Alkylglycerone-phosphate (synthase n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y3G9J1_9GAMM)

HSP 1 Score: 215 bits (548), Expect = 1.840e-57
Identity = 115/224 (51.34%), Postives = 146/224 (65.18%), Query Frame = 3
Query:   33 LKSLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARNN-FLAAE 701
            LK L    +  ++   KG+   E +A T+VFEGS+ E   Q+RDV RIA  H G++GGAS GK GY LT+ IAYLRD+ L   +L ESFET  +WT    +C  V++R+  EH+ R L G  F++ RVTQ+YP G C+YFY A Y +GV NP  VFSE+E AARDE+L +GGSLSHHHGIGK R  F  RV S  + D    +K+A+DP NV GA N  F  AE
Sbjct:  369 LKKLKSSLEKWFVLKVKGFDPNEMTACTLVFEGSKAEVRTQQRDVYRIAAKHQGMNGGASNGKRGYQLTYGIAYLRDWILNHWLLAESFETSAAWTDALAVCNNVKKRLAEEHKKRNLPGKPFMSCRVTQVYPTGVCIYFYFAFYFKGVDNPSEVFSEIEHAARDEVLKSGGSLSHHHGIGKIRQDFLPRVLSQGVLDWQQQIKKAVDPGNVFGAGNQAFETAE 592          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Alkylglycerone-phosphate (synthase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GVH3_9DELT)

HSP 1 Score: 214 bits (546), Expect = 4.550e-57
Identity = 112/211 (53.08%), Postives = 142/211 (67.30%), Query Frame = 3
Query:   51 KAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARN 683
            K +  ++   KG+     +A T+V+EGS+ E   Q R V+R+ R  GGL+GGA  G+ GY LTF+IAY+RDFA+   +LGESFET V+W+ L  LC+ V+ R+  EH  RGL G  FVT RVTQLY  G CVYFY A Y +GV     V++E+E+AAR+EIL  GGSLSHHHGIGK RAGF  RV S    +   G+KR +DP NVLGA N
Sbjct:  396 KLERWFVTRAKGFEPGAMTACTLVYEGSRDEVRRQERRVARLTRRFGGLAGGAENGERGYQLTFSIAYIRDFAMQHFILGESFETSVAWSDLRELCKNVKHRLFEEHSKRGLPGRPFVTCRVTQLYETGVCVYFYFAFYFKGVAEASEVYAEIEKAAREEILANGGSLSHHHGIGKLRAGFLERVFSSTALEWRRGLKRQIDPDNVLGAGN 606          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Alkylglycerone-phosphate (synthase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LMV0_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.030e-56
Identity = 102/201 (50.75%), Postives = 140/201 (69.65%), Query Frame = 3
Query:   87 WGLKETSAVTM--VFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARN 683
            + LK+ SAV++   FEGS +E   Q+  ++R A  +GG+  G S G++GYDLTFAIAYLRDFA+ +  LGESFETFV W+ L+ L  + +ERV  EH+ R L G+  V+ RVTQ+Y EGAC+YFY  +  +GV +PV  + E+E+ ARDEIL  GGSLSHHHG+GK R  + + V+S    DL + +K+ +DP N+ GARN
Sbjct:  100 YNLKKDSAVSVSITFEGSSEEVHYQKSRINRFAVKNGGVMTGPSVGQAGYDLTFAIAYLRDFAMSYFCLGESFETFVPWSKLDDLISRTKERVCLEHKKRCLPGEPLVSCRVTQIYDEGACIYFYYLMNYEGVEDPVSAYHEIEDCARDEILRQGGSLSHHHGVGKIRGKWMNTVNSDYANDLFMDIKQGIDPDNLFGARN 300          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Alkylglycerone-phosphate (synthase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VHC2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.170e-55
Identity = 104/211 (49.29%), Postives = 135/211 (63.98%), Query Frame = 3
Query:   51 KAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARN 683
            KA  A   L + +        T+ FEGS +E  LQ+R V + A  HGGL  G   G++GYD+TFAIAYLRDFA+ +  L ESFETFV W+ L  L    + R+R+EH  R L G+  V+ R+TQLY EGACVYFY  +  Q V +P  VF+E+E AAR+ IL  GGSLSHHHG+GK RA F  R++S  +   +  +KR +DP N+ GARN
Sbjct:  127 KAVKALGSLTRAFDNDAAVCATVTFEGSAEEVRLQKRLVYKYAGRHGGLRAGPKVGRAGYDMTFAIAYLRDFAMTYGFLAESFETFVPWSKLSELVVATKRRIRQEHAGRALPGEPLVSSRITQLYDEGACVYFYYCMNFQNVPHPSRVFAEIEAAARETILDMGGSLSHHHGVGKLRAPFVERINSKAVETAIAEVKRGVDPSNIFGARN 337          
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Match: Alkylglycerone-phosphate (synthase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D0I4K1_9DELT)

HSP 1 Score: 209 bits (533), Expect = 2.490e-55
Identity = 107/217 (49.31%), Postives = 140/217 (64.52%), Query Frame = 3
Query:   33 LKSLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIARSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALEGLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGVRNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDLVLGMKRALDPHNVLGARN 683
            L+ L  + Q  ++   KG+ L   SA T+VFEG+ +E   Q+R    +AR +GGL+GGAS G+ GY LTF IAY+RD+ +   +LGESFET V W+    LCE V+ R+  E   R + G  FVT RVTQLYP G C+YFY A Y +G+  P  +++E+E AARDEIL +GGSLSHHHGIGK R  F  R+ SP +      +K A+DP NV GA N
Sbjct:  377 LRHLESRLQRLFVTKVKGFALDRMSACTLVFEGTGREVKAQQRATYALARRYGGLAGGASNGQRGYQLTFGIAYIRDWIMNHWLLGESFETSVPWSQTLPLCESVKRRIHEECAKRNIAGTPFVTCRVTQLYPTGVCIYFYFAFYFKGLSKPAEIYAEIEHAARDEILRSGGSLSHHHGIGKIRQPFLPRIGSPGVATWAREIKAAVDPTNVFGAAN 593          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig864.16757.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Alkylglycerone-phosphate7.240e-13294.42synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
FAD-binding1.100e-6460.94PCMH-type domain-containing protein n=1 Tax=Ectoca... [more]
Alkyldihydroxyacetonephosphate9.430e-6250.45synthase n=1 Tax=Myxococcaceae bacterium TaxID=248... [more]
Oxidase1.050e-5950.46(Fragment) n=1 Tax=Deltaproteobacteria bacterium T... [more]
Alkylglycerone-phosphate1.040e-5748.75synthase n=1 Tax=Deltaproteobacteria bacterium Tax... [more]
Alkylglycerone-phosphate1.840e-5751.34synthase n=1 Tax=Woeseiaceae bacterium TaxID=20268... [more]
Alkylglycerone-phosphate4.550e-5753.08synthase n=1 Tax=Myxococcales bacterium TaxID=2026... [more]
Alkylglycerone-phosphate3.030e-5650.75synthase n=1 Tax=Leptocylindrus danicus TaxID=1635... [more]
Alkylglycerone-phosphate1.170e-5549.29synthase n=1 Tax=Pseudictyota dubia TaxID=2749911 ... [more]
Alkylglycerone-phosphate2.490e-5549.31synthase n=1 Tax=Deltaproteobacteria bacterium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig864contigE_fasciculatus_S2_contig864:21682..26251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score422.9
Seed ortholog evalue9.2e-116
Seed eggNOG ortholog2880.D7FUE9
Preferred nameAGPS
Model size2185
KEGG rclassRC00004,RC00020,RC02886
KEGG koko:K00803,ko:K13356
KEGG ReactionR04311,R09470
KEGG Pathwayko00073,ko00565,ko01100,ko04146,ko04212,map00073,map00565,map01100,map04146,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006605,GO:0006625,GO:0006629,GO:0006662,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008609,GO:0008610,GO:0008611,GO:0009058,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016740,GO:0016765,GO:0018904,GO:0031090,GO:0031903,GO:0031907,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042579,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043574,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046485,GO:0046504,GO:0046907,GO:0048037,GO:0050660,GO:0050662,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071949,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097384,GO:0098588,GO:0098805,GO:1901265,GO:1901363,GO:1901503,GO:1901576
Exons5
EggNOG free text desc.alkylglycerone-phosphate synthase activity
EggNOG OGsCOG0277@1,COG3320@1,KOG1221@2759,KOG1233@2759
EC1.2.1.84,2.5.1.26
Cds size678
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig864.16757.1prot_E_fasciculatus_S2_contig864.16757.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig864 23160..26222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842521.384421-UTR-E_fasciculatus_S2_contig864:21681..231591696842521.384421-UTR-E_fasciculatus_S2_contig864:21681..23159Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig864 21682..23159 -
1696842521.453111-UTR-E_fasciculatus_S2_contig864:26222..262511696842521.453111-UTR-E_fasciculatus_S2_contig864:26222..26251Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig864 26223..26251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842521.3969038-CDS-E_fasciculatus_S2_contig864:23159..232781696842521.3969038-CDS-E_fasciculatus_S2_contig864:23159..23278Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig864 23160..23278 -
1696842521.4071085-CDS-E_fasciculatus_S2_contig864:23695..238101696842521.4071085-CDS-E_fasciculatus_S2_contig864:23695..23810Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig864 23696..23810 -
1696842521.420086-CDS-E_fasciculatus_S2_contig864:24602..247311696842521.420086-CDS-E_fasciculatus_S2_contig864:24602..24731Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig864 24603..24731 -
1696842521.431732-CDS-E_fasciculatus_S2_contig864:25202..253821696842521.431732-CDS-E_fasciculatus_S2_contig864:25202..25382Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig864 25203..25382 -
1696842521.4422202-CDS-E_fasciculatus_S2_contig864:26087..262221696842521.4422202-CDS-E_fasciculatus_S2_contig864:26087..26222Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig864 26088..26222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig864.16757.1

>prot_E_fasciculatus_S2_contig864.16757.1 ID=prot_E_fasciculatus_S2_contig864.16757.1|Name=mRNA_E_fasciculatus_S2_contig864.16757.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=226bp
MLKSLVPKAQSAYIRLWKGWGLKETSAVTMVFEGSQQEAALQRRDVSRIA
RSHGGLSGGASAGKSGYDLTFAIAYLRDFALLFDVLGESFETFVSWTALE
GLCEKVRERVRREHRDRGLRGDAFVTHRVTQLYPEGACVYFYLAIYAQGV
RNPVGVFSELEEAARDEILLAGGSLSHHHGIGKSRAGFASRVSSPVMTDL
VLGMKRALDPHNVLGARNNFLAAET*
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mRNA from alignment at E_fasciculatus_S2_contig864:21682..26251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig864.16757.1 ID=mRNA_E_fasciculatus_S2_contig864.16757.1|Name=mRNA_E_fasciculatus_S2_contig864.16757.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4570bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig864:21682..26251- (Ectocarpus fasciculatus EfasUO2)
AGGATGATATATCCGGTGGGCTAAGACCGATGCTGAAGAGCCTCGTCCCC AAGGCCCAATCGGCCTATATCCGGCTTTGGAAGGGCTGGGGCTTGAAGGA GACGTCAGCGGTGACCATGGTGTTCGAAGGTTCGCAGCAAGAGGCCGCCC TCCAGAGGAGAGATGTGGGTTGTTTGATGGTGCCTGAGGTTGGCTTTCTC TCGACTTTTCTGATTTGCCACTATTCAGTTTGTTCCATCCGCGACAAGCG ACCGCGTGAAGACTTGCTACAAAATCTCTGTTAATCTTCTTCCGCCGTTG GCATTTCTTAATTTTGGACGGCGCAGATTGTCCGTCCCGTTATTTTGCAC TCATACTTCAGTTTCTCATGTGTTCTGGGAGAGATAAGCTTGGCGTGTAA GCGATTCGCAACAAGGCATAGTCCACTGGAGAAGCACGGGGCGCATACGC GTATGCATTAGAACTCTCGACGCGACACAAATCGTGGGGCTCTCGCCGAC GTCTCGAACGCGTGTTGTTTCGAGACACACAACCCACTCACGTAGGCTGG CCGCGGCTAGCGATCAGGAACTCGGGATACGGCGTGGAACTCGCCTCTCA TTGTCGTATGCACAGAATATGAACGTGTCTAATCGTTGGCGACGAGTATC TGGCATTCCGTGCTCGTTAATCGACGAGGGCTTGCCTTCATCGATTTTTG TTTGCGTTTGCCAATAAAGCAGCAGGACCACAACCTCCATATTCATCTTG TTACAGTATGAGTGTTCGGTACGAAACATTTATTCCGTTGAACCGTGGAT TGCTGGTGCGTGTATTTTCTGATGCTCTGCCACTGTCGTCGCTACTCCCC TGGTGCCACTTCGACGCAGGTGTCGAGGATCGCACGATCTCACGGGGGCC TGTCGGGTGGTGCGAGCGCCGGTAAGTCTGGGTACGACCTGACCTTCGCC ATCGCGTACCTCCGGGACTTTGCCCTCCTGTTCGATGTTCTGGGCGAGTC GTTCGAGACGTTCGTGTCGTGGACGGCCTTGGAAGGGCTGTGCGAGAAGG TACGCATGCTGATCCTCTTCCAGAGAGAAAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGC GACGTGGCCAGAGTTCAGGGTTTGCCGCAACGATTTTAGTGGTGTGGGCA GTTGAGGGCCAGCCTTTTTCTGAATCGTTCCATGGTATCCCACCCGATTA CTCTAGGCTGTGATTCGTGGGGTGCCTGGGCTTCGGCCAGTCGTCTTGGT TGTCGTGCCCTCCGAAAGGTACAGAACATCACCTGAGTGCATGCATTTTC GTGGACAGAAAATTCTTCTACAACCAGAAATCAAACTAGACCAGGAGTCC TGTTCACCCTTGCGCCGTGGGTCGAATTGTCGATCAGGTAAACAGTTGGA ACTATTCCATCAAAACGTGTTACCCTACCGCCGTTGTTCCACCTATCCCT CCGATTATCCCTCCGATCAGGTGCGAGAGAGAGTGCGAAGAGAACACCGC GACAGAGGCCTGAGGGGCGACGCCTTCGTTACACACCGCGTCACCCAGCT TTACCCCGAAGGAGCGTGCGTGTACTTCTATCTCGCCATTTACGCCCAGG TCGGTTGCCGTAAGGTCTGGTTTCGAGGGGGGCGTCTTTTGTGTCTCTTA GATTCGATAGTCTAGTGGTATCCTCGTAACCTTCTAGTGACCTCGGGTCA AGGGTTGGAATCCCGGCGTAACCGAGCTTTCCCTGCAAAGCGGTTTGTCC TCTCGCTTTCGTCCCAGGTTCTGGAAATACCTATAATACAATAACTGGTG TGTACGCTTTGAGGGGAGATAGAGAAGAGAGTGCTGCACTCTTCTCGCGG TAATAAAATCGAAGGAGGGACTGAAGGCGAACATCTCAGGATGGGTGGGT AGGGGGCCTGCCTCAGGGGGAGGAACGGCACCCTTACCCTTCTGTGTGGT GTGACCACAGGTTGGGGCTACAATAGCTCCTACATTACCCCGCAGAAATG CCTGTCGGCGCTGATTTGAAGTGACGGAGAAAAGAGACGGATGACAGTAC GCGTGCGTTCTGGTTGTGTTCCCCAGAGCCGTATATCCTCGATTGGTTTG CTTGCTTCTCCCTCTGTGCAAGTTGTGCGGTCTGCTTGTTGTCGGCCTTC GTGTCCCTGTTCTATTTATTAGTTCGGTGGGATACACGAACATATTACTG TTCACTGTTGATTTTGTTTTGTTTTCCTCGACTCGTCGCTCGGCTTCTCG ATTCGTAAGTTCGATTGTATTTTCTGATGGATTTCGTGCTGTCTTCCTCC GATAACTTGGTTTGCCATCCACTAACCGTTTCAATCGTTTCAATCGTATG CGTGCTTCTCCGTGGGTGCATCCTTTCCGCACACCTCACAGGGTGTTCGC AACCCTGTTGGTGTCTTTTCTGAGCTGGAAGAAGCTGCCAGAGATGAGAT CCTGCTGGCTGGCGGCTCCCTGAGCCACCACCATGGGATTGGCAAATCTA GAGCAGGTGAAACGTTCGTGTAGCCGTCTGCATGCGCAGGAGACAGCGGC AACATGTATCGTAACCGCCAGATATTTCCCTGCACTGTCGGCCCCGCCCC CTATTATCATTTCGTGTACCTTGCAACAAGACGGCGACCGCTTTCAGGAA CTCCGCACCTGGCCGCCGCCATAGCAGTATCGAGACCCTCCACGCACAGA ACGCGTGTGCACCACAATGGAGCCTGTGGGGCCTCTGCCATGCGTCCCAG CCAACCTCGGCATAAACCTTGCACAGGTGTTGACGGAGGACAACCTGTGC GTTGCGTCGTATCATGTTCAAACAAACGACCCGCACCAGACATTAACCGG ATCAATTGGCGTTTCGTGTCTCCCCAACGTCTCCAATTTTGTGTCCAACC GCGCGGCGCGCTATTCCGTGCAGGTTTTGCTTCGAGAGTCTCTTCCCCGG TGATGACCGATCTCGTGCTCGGAATGAAGCGGGCGCTGGACCCACACAAC GTGCTGGGTGCCAGAAATAACTTCCTTGCCGCAGAGACGTAGTGGGGGAT ATATACCGCATTAGCCATCATCACGCACGGTCCAATCAAGACGGGGCATC AGAACACAGGCTTTGGATGGGCGCGGTCCAATTTCTCCCTAAGGGATGTA AACGTAATAAATGGCATGCGTTTGTGATAGGCTTAAGTTCGTAGAGCCAG AATAGTGAAGGTAGACCCTGCGTCTTTGATCAGGAGTCTATTGAGAACGC GATGCGCGACAAGGACGTGGGAGGGTGGCCGTTCGGTCGCCAGTGAGCCC ACCCTAGACGGTGCTGTATTATTATGTGATTTGTTCGTTTTCTTCCCGGT GTTTGCGTTGTTCGGAATCCCAAAGCAAACCCAAGTCGAATCTTCACAGG TGAAGTCAACACCGATCTGGACAAGCGTACTACGATAAGGCAAATTGCAG TGTTCCCTAGTTGACAGATTCAGAAGTAGTGTTTTCGTGTTTTTCAATCC CTGCAGCAAATATCTGCAGCAGCAGATGCTGCAATCTAGAGCCTCTGACA TCCCCACAGCTCGGCTGTTTTATAGTATGGTTTAGTGCGCACTTCCTCTA GAGGCCCCCCATGCATGTTGCAAATACACGTATTGTTCTAGCCAACAAAT TTGTTTTGTGAAGGATATAGGTGAAAAAGAGAGATATGTCATGTGCTTTG GCACAGGCATAGGTATGTAGCGCTTGCATGGAATTCTTTAATCTAGCGAT AGGCATGTGCATGCTTGCTTTCGTACCCCATTATATGCATGAGTAGCCCC CCTTTTGTTTTGTGTTTAGACAGCCGAAGGTGAATGCTTGGTGTGGCAAG TCAGAATGGGTTGGCCAAGGTCGCTCCGTGAAGAGTCACATCCAGGATAA TCTTATTGGTCTATGCCATCCGCGAGGCGTTTCGCGAGCATTTTCTATTG TACGTTTATCCAGGTGTTTTTATGCTAGTACCGGGCGCACACGTCGAAGT GGTTGTATTCCAGACGGTGATACCGGCTCTATTTAGACAATTTCGACGTC TAGCCCGCCTCTCTAAAACGGGGGTTGCGCGTGAAACTGTTTTGACAGCG TCCACCCGGGTGGCCACACGGGGGGTAGGTACTTGTTCAAGTTGAGGTGG GTGTCAGGTTGATGCCAACTCGGGCTCGAGCACCAAAAACGGCTGGCAGG ATCGTTCCTCGAACGAAGGTGTGTGCAAAGTACCTAGTAAATATCCTCGT TGCTTTCTGTCAAGCGTTTCTTGGTTTGAATCACGTTACACTCACGTTAT TTGTTTGGCGCGCTCGAGTATACTATCAAGCCACGCACATTGTTGGGTGC CCTCAGGTGGTCCGAGGCATGAGCTGTAGTACATTCAATTCCTGTGAATC TTTCGAACTATAGCCCCCTCAATCACCCTTTCAAACCGTTTTGCCCTACG AACCTTTTCTATGCCGGTCGCTGCGGTGGTGAGATGGTAGCCTCGAAAAC CATGTTTTTGGCAAGTGCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig864:21682..26251-

>mRNA_E_fasciculatus_S2_contig864.16757.1 ID=mRNA_E_fasciculatus_S2_contig864.16757.1|Name=mRNA_E_fasciculatus_S2_contig864.16757.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig864:21682..26251- (Ectocarpus fasciculatus EfasUO2)
ATGCTGAAGAGCCTCGTCCCCAAGGCCCAATCGGCCTATATCCGGCTTTG
GAAGGGCTGGGGCTTGAAGGAGACGTCAGCGGTGACCATGGTGTTCGAAG
GTTCGCAGCAAGAGGCCGCCCTCCAGAGGAGAGATGTGTCGAGGATCGCA
CGATCTCACGGGGGCCTGTCGGGTGGTGCGAGCGCCGGTAAGTCTGGGTA
CGACCTGACCTTCGCCATCGCGTACCTCCGGGACTTTGCCCTCCTGTTCG
ATGTTCTGGGCGAGTCGTTCGAGACGTTCGTGTCGTGGACGGCCTTGGAA
GGGCTGTGCGAGAAGGTGCGAGAGAGAGTGCGAAGAGAACACCGCGACAG
AGGCCTGAGGGGCGACGCCTTCGTTACACACCGCGTCACCCAGCTTTACC
CCGAAGGAGCGTGCGTGTACTTCTATCTCGCCATTTACGCCCAGGGTGTT
CGCAACCCTGTTGGTGTCTTTTCTGAGCTGGAAGAAGCTGCCAGAGATGA
GATCCTGCTGGCTGGCGGCTCCCTGAGCCACCACCATGGGATTGGCAAAT
CTAGAGCAGGTTTTGCTTCGAGAGTCTCTTCCCCGGTGATGACCGATCTC
GTGCTCGGAATGAAGCGGGCGCTGGACCCACACAACGTGCTGGGTGCCAG
AAATAACTTCCTTGCCGCAGAGACGTAG
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