mRNA_E_fasciculatus_S2_contig849.16617.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig849.16617.1
Unique NamemRNA_E_fasciculatus_S2_contig849.16617.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: AAA_12 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 3.670e-89
Identity = 170/223 (76.23%), Postives = 179/223 (80.27%), Query Frame = 1
Query:    1 VVRVGVITPYRGQVHCIQQEL--GGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSAGGGRGGGG--IGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRKRLEPEAAKGRTSVGGGRGG-DGEALCTRLEEASAGKQGKRDRSVDRQSTGREGGGRGQRGETDETVGSRGAGGSDKVEIQARRRRTGSRTGGHGGGDDS 654
            VVRVG+ITPYRGQVHCIQQEL  GGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPS+G         IGFLADQRRMNVALTRAR SL++LGNVGRLSSD TW ALVDHSKSR+RLEPE  K RTS G      DGEALC RLE+A+AGK+G RDRS DRQ TGR   GRG RGE D+ VGSR A GSD  EIQA RR  GSRTGGH  GD S
Sbjct:  127 VVRVGIITPYRGQVHCIQQELSGGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXXXXXXIGFLADQRRMNVALTRARCSLIILGNVGRLSSDATWNALVDHSKSRERLEPEVVKARTSGGXXXXXXDGEALCARLEKAAAGKKGGRDRSGDRQGTGRNQAGRGGRGEADDAVGSRVADGSDGKEIQAPRRAAGSRTGGHVRGDGS 349          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: Presumed (helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 1.190e-87
Identity = 175/224 (78.12%), Postives = 179/224 (79.91%), Query Frame = 1
Query:    1 VVRVGVITPYRGQVHCIQQELGGGGR-----RLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSAGGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRKRLEPEAAKGRTSVGGGRGG-DGEALCTRLEEASAGKQGKRDRSVDRQSTGREGGGRGQRGETDETVGSRGAGGSDKVEIQARRRRTGSRTGGHGGGDDS 654
            VVRVGVITPYRGQVHCIQQEL G        RLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPS+G       IGFLADQRRMNVALTRARRSLVVLGNVGRLSSD TWKALVDHSKSR RLEPEA K RTS G      DGEALC RLEE +AGK+G RDRS DRQSTGR   GRG RGE D+ VGS  AGGSDK EIQA RR  GSRTGGHG GD S
Sbjct:  602 VVRVGVITPYRGQVHCIQQELSGXXXXXXXXRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXXX-IGFLADQRRMNVALTRARRSLVVLGNVGRLSSDGTWKALVDHSKSRDRLEPEAVKARTSGGXXXXXXDGEALCARLEETAAGKKGGRDRSGDRQSTGRNRAGRGGRGEADDAVGSGVAGGSDKKEIQAPRRPAGSRTGGHGRGDGS 824          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: AAA_12 (domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8QK80_9EURY)

HSP 1 Score: 103 bits (256), Expect = 8.150e-24
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   10 VGVITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSAGGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRK 360
            +G++TPY GQV  I+  L            +  +  EV TVDG+QG+E DV++FSCVR+ S G       +GFL+D+RR+NVALTR++R LVV+GN   L  D+ W++ +DH +SRK
Sbjct:   87 IGIVTPYAGQVRAIRDIL-----------PESMMGVEVRTVDGYQGREKDVIIFSCVRSNSEGN------VGFLSDRRRLNVALTRSKRGLVVIGNPDTLRHDDDWRSWIDHVRSRK 186          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: SEN1 (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.660e-23
Identity = 60/137 (43.80%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    7 RVGVITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSA-----GGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRKRLEPEAAKGRTSVG 402
            R+GVI PYR Q+  +Q+ +   G R  G         EVSTVDGFQG+E D+++FSCVRAP        G   GGGIGFL D RR+NVA+TRA+ ++ ++G+ G L     W+ L++ SK R      +  G TS G
Sbjct:  940 RIGVIAPYRNQIRALQRGMWSTGLRHDG--------VEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSSGGGIGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRNAFIDSSNPGATSSG 1068          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.180e-22
Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    7 RVGVITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSA-----GGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRKRLEPEAAKGRTSVG---------GGRGGDG--EALCTRLEEASA 459
            ++GVI PYR Q+  +Q+ +   G R  G         EVSTVDGFQG+E D+++FSCVRAP        G   GGG+GFL D RR+NVA+TRA+ ++ ++G+ G L     W+ L++ SK R      +  G TS G         G  GGD   +   TR+ E  A
Sbjct: 1131 KIGVIAPYRNQIRALQRGMWSTGLRHDG--------VEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSSGGGVGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRDAFIDSSNPGATSSGRNSGSNTSRGSNGGDSWTDTTSTRVLEKEA 1289          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: Helicase (sen1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPV4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.690e-22
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   16 VITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSAGGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRKRL 366
            VITPYR QV  +++ L     R++ G E+G   AEVST+DGFQG+E +V++FSCVRA   GG      IGFLAD+RRMNV LTRARRSL VL +   L +D +W+A ++ ++ R+ L
Sbjct: 2384 VITPYRAQVRLVEEHL-----RVRFG-EEGSSLAEVSTIDGFQGREKEVIIFSCVRANPQGGT-----IGFLADERRMNVGLTRARRSLFVLCHRASLWTDRSWRAFIEDAEERQSL 2489          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: AAA_12 (domain-containing protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067EWL0_CITSI)

HSP 1 Score: 103 bits (256), Expect = 2.070e-22
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    4 VRVGVITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSAGGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSR 357
            V VG+ITPY+ Q+ C+Q E     R +    E  G D  ++TVD FQG+E DV++ SCVRA + G       +GF+AD RRMNVALTRARR+L V+GN G L+  + W AL+  SK+R
Sbjct:   96 VTVGIITPYKLQLKCLQHEF----RNVLNSEE--GKDLYINTVDAFQGQERDVIIMSCVRASNHG-------VGFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKAR 200          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: Os10g0118900 (protein (Fragment) n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0IZ90_ORYSJ)

HSP 1 Score: 99.4 bits (246), Expect = 2.400e-22
Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   10 VGVITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSAGGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRK 360
            VG+ITPY+ Q+ C+Q+E            EDG  D  ++TVD FQG+E DV++ SCVRA + G       +GF+AD RRMNVALTRARR+L V+GN G L   E W  L+  +K+RK
Sbjct:   30 VGIITPYKLQLKCLQREF-----EEVMSTEDG-KDIYINTVDAFQGQERDVIIMSCVRASNHG-------VGFVADIRRMNVALTRARRALWVVGNAGALMQSEDWALLIADAKARK 133          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: TFIIS (N-terminal domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGC1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.950e-22
Identity = 60/121 (49.59%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   10 VGVITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSAGGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRKRLEP 372
            VG ++PY+ QV  ++QE+       + G+    V  EV+TVDGFQG+E DV++FSCVRA   GG      IGFL D RR+NVA+TRAR  L V+GNV  L  DETW ALV  ++ R+ L P
Sbjct: 1175 VGFVSPYKEQVRVLRQEI------TRSGIPSN-VSVEVNTVDGFQGREKDVIVFSCVRASRRGG------IGFLRDIRRLNVAITRARFCLYVVGNVNTLVRDETWAALVKSARDRRLLIP 1282          
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Match: TFIIS (N-terminal domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YRP3_PHYSP)

HSP 1 Score: 104 bits (259), Expect = 4.200e-22
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   10 VGVITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSAGGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDETWKALVDHSKSRK 360
            VG ++PY+ QV  ++QE+       K G+    V  EV+TVDGFQG+E DV++FSCVRA   GG      IGFL D RR+NVA+TRAR  L V+GNV  L  DETW ALV  ++ RK
Sbjct: 1954 VGFVSPYKEQVRVLRQEI------TKSGIPTT-VSIEVNTVDGFQGREKDVIIFSCVRASKRGG------IGFLRDIRRLNVAITRARFCLYVVGNVNTLVRDETWAALVKSARDRK 2057          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig849.16617.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
AAA_123.670e-8976.23domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Presumed1.190e-8778.13helicase required for RNA polymerase II transcript... [more]
AAA_128.150e-2445.30domain-containing protein n=1 Tax=Euryarchaeota ar... [more]
SEN14.660e-2343.80protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.180e-2239.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Helicase1.690e-2251.28sen1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 ... [more]
AAA_122.070e-2249.15domain-containing protein n=1 Tax=Citrus sinensis ... [more]
Os10g01189002.400e-2248.72protein (Fragment) n=2 Tax=Oryza sativa subsp. jap... [more]
TFIIS2.950e-2249.59N-terminal domain-containing protein (Fragment) n=... [more]
TFIIS4.200e-2251.28N-terminal domain-containing protein n=1 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig849contigE_fasciculatus_S2_contig849:18636..19752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score297.0
Seed ortholog evalue7.3e-78
Seed eggNOG ortholog2880.D8LLI3
Model size655
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
Cds size654
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842507.7318757-CDS-E_fasciculatus_S2_contig849:18635..191691696842507.7318757-CDS-E_fasciculatus_S2_contig849:18635..19169Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 18636..19169 -
1696842507.746716-CDS-E_fasciculatus_S2_contig849:19632..197521696842507.746716-CDS-E_fasciculatus_S2_contig849:19632..19752Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 19633..19752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig849.16617.1prot_E_fasciculatus_S2_contig849.16617.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig849 18636..19752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig849.16617.1

>prot_E_fasciculatus_S2_contig849.16617.1 ID=prot_E_fasciculatus_S2_contig849.16617.1|Name=mRNA_E_fasciculatus_S2_contig849.16617.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=218bp
VVRVGVITPYRGQVHCIQQELGGGGRRLKGGVEDGGVDAEVSTVDGFQGK
EVDVVLFSCVRAPSAGGGRGGGGIGFLADQRRMNVALTRARRSLVVLGNV
GRLSSDETWKALVDHSKSRKRLEPEAAKGRTSVGGGRGGDGEALCTRLEE
ASAGKQGKRDRSVDRQSTGREGGGRGQRGETDETVGSRGAGGSDKVEIQA
RRRRTGSRTGGHGGGDDS
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mRNA from alignment at E_fasciculatus_S2_contig849:18636..19752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig849.16617.1 ID=mRNA_E_fasciculatus_S2_contig849.16617.1|Name=mRNA_E_fasciculatus_S2_contig849.16617.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1117bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:18636..19752- (Ectocarpus fasciculatus EfasUO2)
GTAGTCCGGGTGGGCGTTATCACACCCTACCGGGGCCAGGTGCATTGCAT CCAGCAGGAGCTTGGCGGCGGCGGCCGGCGGCTCAAGGGGGGCGTCGAAG ACGGGGGGGTTGATGCCGAGGTGAGCGCTCTCCCGACTCCCGTTTTTTCG TTTTGTCCTCCGTAGCAGCGCATGCGGAGAACTCGAGGCTGTTTCCGGAC GAGCAAGGGTGGAGACCGGGGTGTTGTGTTGTTGCTTGCGCTTTCCCGTG AGACAAGAAGCCACCTCTGGGGGAGAGTCTTCGTCTCTTCTACTTGTACT TGTGGTCTTAAATGTATCCCCATGCGTCATCACCCAGCCTGGACTGGATA CTTGTAGAGACTTTCTCTGGCATCTACCGAAATGTGTTCACCCCGGCCTC GCTTCTAGAGGAACACCCTGAAACGATGCGGTGACTCTTGGAACAGCTGA TCAAAGGTAGCCACCGGGGCGTTTGGGTTCGGTCTTGAGACGATTGGCCC GGGTCTTCATGCCATCTCCCGCTTCAAAGTCTACGCTGCCCCTGCCGAAG AAACACGTCTCATCGTGGCCTTTTTTTTCACAGGTGAGCACGGTGGACGG CTTTCAGGGAAAAGAGGTCGACGTCGTTCTCTTCTCGTGCGTCCGCGCTC CGTCAGCCGGCGGCGGAAGAGGCGGCGGCGGGATAGGGTTCCTCGCCGAC CAGCGGCGAATGAACGTGGCGCTCACCCGAGCCAGGCGTTCCCTCGTTGT CCTAGGGAACGTCGGCCGGCTGTCCTCCGATGAGACCTGGAAGGCGCTTG TCGACCACTCCAAGTCGCGCAAGCGGCTGGAGCCGGAGGCGGCTAAGGGT CGGACCTCGGTTGGCGGCGGTAGGGGCGGCGATGGGGAAGCGCTCTGCAC GCGACTGGAAGAGGCATCCGCTGGGAAGCAAGGGAAACGCGATCGTAGCG TCGATCGCCAAAGCACAGGAAGGGAAGGAGGGGGTCGCGGACAAAGGGGC GAAACAGATGAAACTGTTGGATCGCGAGGCGCGGGCGGAAGCGATAAGGT TGAGATCCAAGCGCGGCGGCGGCGTACAGGCAGCCGCACGGGAGGACATG GCGGTGGAGACGACAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig849:18636..19752-

>mRNA_E_fasciculatus_S2_contig849.16617.1 ID=mRNA_E_fasciculatus_S2_contig849.16617.1|Name=mRNA_E_fasciculatus_S2_contig849.16617.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=654bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:18636..19752- (Ectocarpus fasciculatus EfasUO2)
GTAGTCCGGGTGGGCGTTATCACACCCTACCGGGGCCAGGTGCATTGCAT
CCAGCAGGAGCTTGGCGGCGGCGGCCGGCGGCTCAAGGGGGGCGTCGAAG
ACGGGGGGGTTGATGCCGAGGTGAGCACGGTGGACGGCTTTCAGGGAAAA
GAGGTCGACGTCGTTCTCTTCTCGTGCGTCCGCGCTCCGTCAGCCGGCGG
CGGAAGAGGCGGCGGCGGGATAGGGTTCCTCGCCGACCAGCGGCGAATGA
ACGTGGCGCTCACCCGAGCCAGGCGTTCCCTCGTTGTCCTAGGGAACGTC
GGCCGGCTGTCCTCCGATGAGACCTGGAAGGCGCTTGTCGACCACTCCAA
GTCGCGCAAGCGGCTGGAGCCGGAGGCGGCTAAGGGTCGGACCTCGGTTG
GCGGCGGTAGGGGCGGCGATGGGGAAGCGCTCTGCACGCGACTGGAAGAG
GCATCCGCTGGGAAGCAAGGGAAACGCGATCGTAGCGTCGATCGCCAAAG
CACAGGAAGGGAAGGAGGGGGTCGCGGACAAAGGGGCGAAACAGATGAAA
CTGTTGGATCGCGAGGCGCGGGCGGAAGCGATAAGGTTGAGATCCAAGCG
CGGCGGCGGCGTACAGGCAGCCGCACGGGAGGACATGGCGGTGGAGACGA
CAGC
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