mRNA_E_fasciculatus_S2_contig8354.16489.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI) HSP 1 Score: 239 bits (610), Expect = 1.170e-70 Identity = 126/151 (83.44%), Postives = 127/151 (84.11%), Query Frame = 3
Query: 3 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGS---------------------ASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNK 392
VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDG+ AS DEARPSPSLPE DDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNG HVQETARAVVEALMGGCLNSSMVWLLHYNK
Sbjct: 280 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGTGGGGGTTAAGSFGAGDGGDDEASGDEARPSPSLPEGDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNK 430
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE) HSP 1 Score: 238 bits (606), Expect = 4.080e-70 Identity = 124/151 (82.12%), Postives = 126/151 (83.44%), Query Frame = 3
Query: 3 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGSA---------------------SDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNK 392
VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDG+ S DEARPSPSLPE+DDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNG HVQETAR VVEALMGGCLNSSMVWLLHYNK
Sbjct: 333 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGTGGXXXXXXXGSFGAGDGGDDEPSGDEARPSPSLPEDDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARTVVEALMGGCLNSSMVWLLHYNK 483
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7R3_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.050e-23 Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 3
Query: 12 CVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
CV+ LP NL++CLR++RV+E + A S S P+ D P + AT ++ +LL LCSD S VGEQ++PHL GLL+L+ ++YPP+G+H+ A +V+ + CL++S+VW LH K+
Sbjct: 51 CVENELPPNLINCLRLLRVLELQHAH------------SVSTPQPDPGPVSTLATAKVARLLCLLCSDPS--VGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKM 164
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHH9_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.330e-22 Identity = 52/131 (39.69%), Postives = 85/131 (64.89%), Query Frame = 3
Query: 3 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
V C++ LP N++HCLR++RV+E + A + + + + + +P + RAT ++ +LL TLC+D+S VGEQ++PHL GLL+L+ ++YP +GVHV + A V+ A CL++S+VW LH K+
Sbjct: 92 VMRCLENELPPNMIHCLRLLRVLELQHAAQTYKEYEAQGKTDQPI-----KPISSRATGKVSQLLCTLCTDQS--VGEQLRPHLFGLLALSGASYPRSGVHVAKAASQVIIAFAQYCLSNSLVWFLHDRKM 215
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q415_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.370e-19 Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = 3
Query: 12 CVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPE-------------EDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLH 383
C++ LP NL+HC+R++RVVE ++A + + R +K ATE++ KLL LC D A VGEQ++PHL GLL+L+ + YP NGVHV A V+ + GCL++S+VW LH
Sbjct: 223 CMENELPPNLIHCMRLLRVVELKAAHSQSAXXXXXXXXXXXXXXXXXXXXXXXXXXPQKVRSVSKAATEKVQKLLSLLCGD--ASVGEQLRPHLFGLLALSGARYPINGVHVARAASKVIVSFSKGCLSTSLVWFLH 357
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDL2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.520e-18 Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 3
Query: 3 VKLCVDAGLPSNLVHCLRIMRVVEF---ESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLH 383
V LCV +PSNLVHCLR++R++E E A +G+ E P + AT+R+ LL+ LC S VG ++ PHL L +L ++YPPN +HV A VV A CL+SS+V +H
Sbjct: 52 VDLCVKFSVPSNLVHCLRMLRLLELQVVEKATEEGAM-------------EAVTPVSTNATDRVASLLLILCVSPS--VGHELLPHLSRLFALVGASYPPNAIHVARAASDVVSAFARNCLDSSLVDHMH 166
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2Q0_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 5.510e-18 Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 3
Query: 12 CVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
C++ LP N++HCLR++RV+E + A + + + + +P + RAT ++ +LL LC++ S VGEQ++ HL GLL+L+ ++YP +GVHV A V+ A CL++S+V LH K+
Sbjct: 150 CLENELPPNMIHCLRLLRVLELQHAAETYKEYEAQGKVDQPI-----KPISSRATAKVSQLLCNLCTNPS--VGEQLRLHLFGLLALSGASYPSSGVHVARAASQVIIAFAQNCLSNSLVLFLHDRKM 270
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSP2_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.400e-14 Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query: 171 ATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
AT ++ +LL LCSD S VGEQ++PHL GLL+L+ ++YPP+G+H+ A +V+ + CL++S+VW LH K+
Sbjct: 4 ATAKVTRLLCLLCSDPS--VGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKM 76
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Predicted (protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3B7_PHATC) HSP 1 Score: 78.2 bits (191), Expect = 3.030e-14 Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 3
Query: 12 CVDAGLPSNLVHCLRIMRVVEFESA-----------------MRDGSASDDEARPSPSLPEEDDRP-------QTKRATERIG-----KLLVTLCS-DKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
CV+ LP NLVHCLR++RV+E + A + + + DEA +E++ P + + IG K+ LC + VGEQ++PHL GL +L+ ++YPP+G+HV A V+ A CLN +VW +H K+
Sbjct: 155 CVENELPPNLVHCLRLLRVLELQHASGEVENAKESQVTKHDSVENEEGTADEAMEKEDQHQEEENPVGEIESDTSSAVLQPIGLVATQKVSKLLCQLCRDPSVGEQLRPHLFGLFALSGASYPPSGLHVALAASDVIVAFSEHCLNRQLVWFIHDRKM 312
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNL8_FISSO) HSP 1 Score: 77.4 bits (189), Expect = 6.040e-14 Identity = 42/128 (32.81%), Postives = 69/128 (53.91%), Query Frame = 3
Query: 12 CVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
C++ LP NL+HCLR++RV+E ++ + + P +AT +LL+ LC+ +A GEQ++ HL GLL+L+ ++YP G+ V A +V+ AL C +VW +H K+
Sbjct: 125 CIEQELPPNLIHCLRLLRVLELKNT-------------------DTETPAAFKATRNTSRLLMALCT--TAQTGEQLQSHLFGLLALSGASYPETGLAVAMAASSVIIALAQYCWTPQIVWYIHDRKM 231 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8354.16489.1 >prot_E_fasciculatus_S2_contig8354.16489.1 ID=prot_E_fasciculatus_S2_contig8354.16489.1|Name=mRNA_E_fasciculatus_S2_contig8354.16489.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=67bp SSSSAWTPACRPTWCTASALCEWWSSRAPCATAALATTRLARPLLCRRRTback to top mRNA from alignment at E_fasciculatus_S2_contig8354:5950..6401- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8354.16489.1 ID=mRNA_E_fasciculatus_S2_contig8354.16489.1|Name=mRNA_E_fasciculatus_S2_contig8354.16489.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=452bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8354:5950..6401- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8354:5950..6401- >mRNA_E_fasciculatus_S2_contig8354.16489.1 ID=mRNA_E_fasciculatus_S2_contig8354.16489.1|Name=mRNA_E_fasciculatus_S2_contig8354.16489.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8354:5950..6401- (Ectocarpus fasciculatus EfasUO2)back to top |