mRNA_E_fasciculatus_S2_contig8354.16489.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8354.16489.1
Unique NamemRNA_E_fasciculatus_S2_contig8354.16489.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 1.170e-70
Identity = 126/151 (83.44%), Postives = 127/151 (84.11%), Query Frame = 3
Query:    3 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGS---------------------ASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNK 392
            VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDG+                     AS DEARPSPSLPE DDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNG HVQETARAVVEALMGGCLNSSMVWLLHYNK
Sbjct:  280 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGTGGGGGTTAAGSFGAGDGGDDEASGDEARPSPSLPEGDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNK 430          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 4.080e-70
Identity = 124/151 (82.12%), Postives = 126/151 (83.44%), Query Frame = 3
Query:    3 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGSA---------------------SDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNK 392
            VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDG+                      S DEARPSPSLPE+DDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNG HVQETAR VVEALMGGCLNSSMVWLLHYNK
Sbjct:  333 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGTGGXXXXXXXGSFGAGDGGDDEPSGDEARPSPSLPEDDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARTVVEALMGGCLNSSMVWLLHYNK 483          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7R3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.050e-23
Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 3
Query:   12 CVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
            CV+  LP NL++CLR++RV+E + A             S S P+ D  P +  AT ++ +LL  LCSD S  VGEQ++PHL GLL+L+ ++YPP+G+H+   A +V+ +    CL++S+VW LH  K+
Sbjct:   51 CVENELPPNLINCLRLLRVLELQHAH------------SVSTPQPDPGPVSTLATAKVARLLCLLCSDPS--VGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKM 164          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHH9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.330e-22
Identity = 52/131 (39.69%), Postives = 85/131 (64.89%), Query Frame = 3
Query:    3 VKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
            V  C++  LP N++HCLR++RV+E + A +     + + +    +     +P + RAT ++ +LL TLC+D+S  VGEQ++PHL GLL+L+ ++YP +GVHV + A  V+ A    CL++S+VW LH  K+
Sbjct:   92 VMRCLENELPPNMIHCLRLLRVLELQHAAQTYKEYEAQGKTDQPI-----KPISSRATGKVSQLLCTLCTDQS--VGEQLRPHLFGLLALSGASYPRSGVHVAKAASQVIIAFAQYCLSNSLVWFLHDRKM 215          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q415_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.370e-19
Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = 3
Query:   12 CVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPE-------------EDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLH 383
            C++  LP NL+HC+R++RVVE ++A    +                           +  R  +K ATE++ KLL  LC D  A VGEQ++PHL GLL+L+ + YP NGVHV   A  V+ +   GCL++S+VW LH
Sbjct:  223 CMENELPPNLIHCMRLLRVVELKAAHSQSAXXXXXXXXXXXXXXXXXXXXXXXXXXPQKVRSVSKAATEKVQKLLSLLCGD--ASVGEQLRPHLFGLLALSGARYPINGVHVARAASKVIVSFSKGCLSTSLVWFLH 357          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDL2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.520e-18
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 3
Query:    3 VKLCVDAGLPSNLVHCLRIMRVVEF---ESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLH 383
            V LCV   +PSNLVHCLR++R++E    E A  +G+              E   P +  AT+R+  LL+ LC   S  VG ++ PHL  L +L  ++YPPN +HV   A  VV A    CL+SS+V  +H
Sbjct:   52 VDLCVKFSVPSNLVHCLRMLRLLELQVVEKATEEGAM-------------EAVTPVSTNATDRVASLLLILCVSPS--VGHELLPHLSRLFALVGASYPPNAIHVARAASDVVSAFARNCLDSSLVDHMH 166          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2Q0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.510e-18
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 3
Query:   12 CVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
            C++  LP N++HCLR++RV+E + A       + + +    +     +P + RAT ++ +LL  LC++ S  VGEQ++ HL GLL+L+ ++YP +GVHV   A  V+ A    CL++S+V  LH  K+
Sbjct:  150 CLENELPPNMIHCLRLLRVLELQHAAETYKEYEAQGKVDQPI-----KPISSRATAKVSQLLCNLCTNPS--VGEQLRLHLFGLLALSGASYPSSGVHVARAASQVIIAFAQNCLSNSLVLFLHDRKM 270          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSP2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.400e-14
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  171 ATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
            AT ++ +LL  LCSD S  VGEQ++PHL GLL+L+ ++YPP+G+H+   A +V+ +    CL++S+VW LH  K+
Sbjct:    4 ATAKVTRLLCLLCSDPS--VGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKM 76          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Predicted (protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3B7_PHATC)

HSP 1 Score: 78.2 bits (191), Expect = 3.030e-14
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 3
Query:   12 CVDAGLPSNLVHCLRIMRVVEFESA-----------------MRDGSASDDEARPSPSLPEEDDRP-------QTKRATERIG-----KLLVTLCS-DKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
            CV+  LP NLVHCLR++RV+E + A                 + +   + DEA       +E++ P        +    + IG     K+   LC   +   VGEQ++PHL GL +L+ ++YPP+G+HV   A  V+ A    CLN  +VW +H  K+
Sbjct:  155 CVENELPPNLVHCLRLLRVLELQHASGEVENAKESQVTKHDSVENEEGTADEAMEKEDQHQEEENPVGEIESDTSSAVLQPIGLVATQKVSKLLCQLCRDPSVGEQLRPHLFGLFALSGASYPPSGLHVALAASDVIVAFSEHCLNRQLVWFIHDRKM 312          
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Match: Uncharacterized (protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNL8_FISSO)

HSP 1 Score: 77.4 bits (189), Expect = 6.040e-14
Identity = 42/128 (32.81%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   12 CVDAGLPSNLVHCLRIMRVVEFESAMRDGSASDDEARPSPSLPEEDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGVHVQETARAVVEALMGGCLNSSMVWLLHYNKV 395
            C++  LP NL+HCLR++RV+E ++                    + + P   +AT    +LL+ LC+  +A  GEQ++ HL GLL+L+ ++YP  G+ V   A +V+ AL   C    +VW +H  K+
Sbjct:  125 CIEQELPPNLIHCLRLLRVLELKNT-------------------DTETPAAFKATRNTSRLLMALCT--TAQTGEQLQSHLFGLLALSGASYPETGLAVAMAASSVIIALAQYCWTPQIVWYIHDRKM 231          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8354.16489.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Uncharacterized1.170e-7083.44protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized4.080e-7082.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical3.050e-2341.41protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Uncharacterized1.330e-2239.69protein (Fragment) n=1 Tax=Fragilariopsis cylindru... [more]
Hypothetical3.370e-1938.69protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical3.520e-1839.23protein (Fragment) n=1 Tax=Corethron hystrix TaxID... [more]
Uncharacterized5.510e-1836.72protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
Hypothetical1.400e-1446.67protein (Fragment) n=1 Tax=Ditylum brightwellii Ta... [more]
Predicted3.030e-1432.28protein n=3 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Uncharacterized6.040e-1432.81protein n=2 Tax=Fistulifera solaris TaxID=1519565 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8354contigE_fasciculatus_S2_contig8354:5950..6401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size396
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.6636577-UTR-E_fasciculatus_S2_contig8354:5949..61431696842494.6636577-UTR-E_fasciculatus_S2_contig8354:5949..6143Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8354 5950..6143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.6755536-CDS-E_fasciculatus_S2_contig8354:6143..62421696842494.6755536-CDS-E_fasciculatus_S2_contig8354:6143..6242Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8354 6144..6242 -
1696842494.6942496-CDS-E_fasciculatus_S2_contig8354:6299..64011696842494.6942496-CDS-E_fasciculatus_S2_contig8354:6299..6401Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8354 6300..6401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8354.16489.1prot_E_fasciculatus_S2_contig8354.16489.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8354 6144..6401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8354.16489.1

>prot_E_fasciculatus_S2_contig8354.16489.1 ID=prot_E_fasciculatus_S2_contig8354.16489.1|Name=mRNA_E_fasciculatus_S2_contig8354.16489.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=67bp
SSSSAWTPACRPTWCTASALCEWWSSRAPCATAALATTRLARPLLCRRRT
TARRRRERPSASGSCW*
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mRNA from alignment at E_fasciculatus_S2_contig8354:5950..6401-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8354.16489.1 ID=mRNA_E_fasciculatus_S2_contig8354.16489.1|Name=mRNA_E_fasciculatus_S2_contig8354.16489.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=452bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8354:5950..6401- (Ectocarpus fasciculatus EfasUO2)
TCGTCAAGCTCTGCGTGGACGCCGGCCTGCCGTCCAACCTGGTGCACTGC CTCCGCATTATGCGAGTGGTGGAGTTCGAGAGCGCCATGCGCGACGGCAG CGGTGGCGGTAGTACCGCGACTGATTCGTTTGGCGCACGCGATGGCGGAG ACGATGAAGCTAGCGACGACGAGGCTCGCCCGTCCCCTTCTCTGCCGGAG GAGGACGACCGCCCGCAGACGAAGAGAGCGACCGAGCGCATCGGGAAGCT GCTGGTGACGCTCTGCAGCGACAAGTCGGCCGGGGTCGGGGAGCAGATCA AGCCCCACCTGCCGGGCCTGCTGAGCCTCGCCGTCAGCGCCTACCCGCCG AACGGCGTGCACGTGCAGGAGACGGCGCGGGCGGTGGTGGAGGCGCTCAT GGGCGGCTGCCTCAACTCCAGCATGGTGTGGCTTCTCCACTACAACAAGG TT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8354:5950..6401-

>mRNA_E_fasciculatus_S2_contig8354.16489.1 ID=mRNA_E_fasciculatus_S2_contig8354.16489.1|Name=mRNA_E_fasciculatus_S2_contig8354.16489.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8354:5950..6401- (Ectocarpus fasciculatus EfasUO2)
TCGTCAAGCTCTGCGTGGACGCCGGCCTGCCGTCCAACCTGGTGCACTGC
CTCCGCATTATGCGAGTGGTGGAGTTCGAGAGCGCCATGCGCGACGGCAG
CGCTAGCGACGACGAGGCTCGCCCGTCCCCTTCTCTGCCGGAGGAGGACG
ACCGCCCGCAGACGAAGAGAGCGACCGAGCGCATCGGGAAGCTGCTGGTG
A
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