mRNA_E_fasciculatus_S2_contig8234.16381.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8234.16381.1
Unique NamemRNA_E_fasciculatus_S2_contig8234.16381.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: VOC (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU98_ECTSI)

HSP 1 Score: 746 bits (1926), Expect = 1.020e-267
Identity = 385/413 (93.22%), Postives = 394/413 (95.40%), Query Frame = 2
Query:   74 MKARSSTCRCVRWAQLLVLGTCGDVRVWQAAGFGLGARPPVPVQQKQHTASCPATLVLMSDSDASDRSXXXXSRRGEGGAKPTGRGDFLRNSAAFLAGGSAAIAATTTAGAGFPSAAEAIGDLYEFKDQARFAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAA-DGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQINPGSVVSVAILAEDVEKIAESLGGAVGVDSARGEGRSVAVADPDGYSVRFVEYSDWRGQLPRLV 1309
            MK RSSTCRCVRWAQLLVL TCGD+RVWQAAGFGLGARP VPVQQKQHTA+C AT VLMS+S ASDRS    SRRGEGGA+PTGRGDFLRNSAAFLAGGSAAIAA TTAGAGFPSAAEAIGDLYEFKDQARFAQHAT+QVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEA AA DGEED DFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSG+RRDPPMFLAVKVKDMKRSVQWYTDVAGMTK PFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQINPGSVVSVA+LAEDVEKIAESLGG V VDSARG G+SVAVADPDGY V+FVEYSDWRGQLPRLV
Sbjct:    1 MKTRSSTCRCVRWAQLLVLSTCGDIRVWQAAGFGLGARPSVPVQQKQHTATCSATQVLMSESQASDRSS---SRRGEGGAEPTGRGDFLRNSAAFLAGGSAAIAAATTAGAGFPSAAEAIGDLYEFKDQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAGAAEDGEEDVDFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGSRRDPPMFLAVKVKDMKRSVQWYTDVAGMTKFPFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQINPGSVVSVAVLAEDVEKIAESLGGKVSVDSARGGGKSVAVADPDGYGVKFVEYSDWRGQLPRLV 410          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: VOC (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIX3_9STRA)

HSP 1 Score: 262 bits (670), Expect = 1.440e-78
Identity = 159/305 (52.13%), Postives = 201/305 (65.90%), Query Frame = 2
Query:  404 AGFPSAAEAIGDLYEFKDQARFAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLFNT--TVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAADGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAREA-GSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQ--INPGSVVS-VAILAEDVEKIAESLGGAVGVDSARGEGRSVAV-ADPDGYSVRFVEYSDWRGQL 1297
            AG P    AIG+L E   Q RF QHA + VPD+ AA++FY +G+GM+V+R+RA    NT  T V +GPE L VP  +  GVSS   YGGHF+LEL         ADGE     FYDPGNGVQ++QIAVD+YRIS+V+ AGG +  GYG        GL++ L SG RRDP MF+A+KV D+K+SVQWYTDV GM++ P+P+AREA  S FEP+QP GSVFM Y+ +  GV+LIP  K D+  I  GS  S +A+LA DVE   + +G A+    A G   SVAV ADPDGY+   VEY D+  +L
Sbjct:   87 AGSPEGCNAIGELPETLSQKRFVQHAVVNVPDIEAAIRFYTEGLGMRVVRSRADTSANTNTTFVAYGPEQLTVPKDWAPGVSSFAAYGGHFSLELVGPLN--PPADGELP---FYDPGNGVQYIQIAVDTYRISKVIAAGGEVIFGYG--------GLKINLFSGVRRDPMMFVALKVSDLKKSVQWYTDVLGMSQFPYPKAREAVDSVFEPKQPKGSVFMGYDEDGSGVLLIPKDKKDKAPIVVGSAYSKLAVLATDVEDEGKRVG-AMYAGKAPGTSTSVAVVADPDGYTTVLVEYDDFAREL 377          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: Uncharacterized (protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D405_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.300e-55
Identity = 133/311 (42.77%), Postives = 183/311 (58.84%), Query Frame = 2
Query:  413 PSAAEAIGDLYEFKDQARFAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAADGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQ---INPGSVVS-VAILAEDVEKIAESLGGAV-----GVD-----SARGEGRSVAVA-DP-DGYSVRFVEYSDWRGQL 1297
            P+AA AIG+L E+    RF QH  + VPDMAAAL FY+DG+ M+V+R+R     N+T VG+GPE L+ P  +  GVSS + YG HF LELN   +       EE      DPGN   +LQ+AV S R+S++ +AGG I+S YG++ V +PGGLR +++ G RRDP M LA+ V D++++  +Y +  GM + P+P +R   S +EP+QP GS F+A+  + FG++L+P  K +    +  G VV  +AIL  DV       GGA      GVD      A G G  VAV  DP  G  V  VE  D   +L
Sbjct:   55 PNAANAIGELPEWASNPRFTQHLVINVPDMAAALSFYIDGLQMQVLRSRLVGGQNSTFVGYGPETLKTPKGWYPGVSSFSMYGAHFALELNEVLKT------EEGDTPVLDPGNAAAYLQLAVPSLRLSKLAEAGGKIKSAYGWVLVDSPGGLRHQVIVGMRRDPIMMLALNVPDVQKASHFYVNSLGMQEQPYPLSRIPESIYEPKQPKGSRFLAFNEDGFGILLLPLPKKEAKAGVRLGGVVDKLAILGTDVV----GKGGAEDWKASGVDVKFAGEAPGIGTKVAVTQDPVTGLGVVLVEAEDLEKEL 355          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ58_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.720e-54
Identity = 115/268 (42.91%), Postives = 156/268 (58.21%), Query Frame = 2
Query:  371 SAAIAATTTAGAGFPSAAEAIGDLYEFKDQARFAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAADGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQINPGSVVS-VAILAEDVEKI 1171
            S+AI  +     G      +IG+L EF D A+F QH  ++V DM AAL+F + G+ M V+RTR     N T VG+GPE L  P  FV GVSS   YGGHF+LEL S          E+   F  +PG  +Q++Q+A  +    +++KAGGII  GYGY  V+AP GL  ++     RDP  ++A+KVKDMK+S+ +Y  V GM KL +   R   S FEP QP GSV M Y   +  ++LIPA + D I  G+V + +AI+   VE I
Sbjct:   12 SSAILGSVALSQGLSQPGWSIGELPEFSDDAKFIQHMVVRVEDMDAALEFCLKGLQMSVLRTRLVDGINGTFVGYGPEQLSPPEDFVPGVSSFARYGGHFSLELVSPTTPL-----EQRKPFANNPGTALQYIQLAAPNLSFGKLIKAGGIITGGYGYADVIAPFGLPFRVFVADTRDPAQYIAMKVKDMKKSIAYYEKVLGMKKLSYEMLRVKDSSFEPIQPKGSVVMGYNENSCNILLIPATRQDTIEVGNVFAKLAIVTNGVEDI 274          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: VOC (domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHT2_VITBC)

HSP 1 Score: 195 bits (496), Expect = 8.990e-54
Identity = 128/304 (42.11%), Postives = 172/304 (56.58%), Query Frame = 2
Query:  431 IGDLYEFKDQARFAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLF--NTTVVGFGPEALE---VPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAADGEEDADFF---YDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAR-EAGSPFEPEQPAGSVFMAYEGEAFGVVLIPA----AKGDQINPGSVVS-VAILAEDVEKIAESLGGAVGVDSARGEGRSVAV-ADPDGYSVRFVEYSDWRGQL 1297
            +G L E ++  R+ QHA + VP M  AL FY  G+GM+VIRTR  P    N T VG+GPE L+   V   F  G+SS N YG HFTLEL  ++        +EDA      Y+PGNGVQFLQIA+   R+SQ+ + GG I   YG+++V APGGL L+++ G RRDP MF    VKD+  +  +Y    GM +LP+ +AR    SP EP+QP  S +M Y  + FG++L+      AK   I  GSV   +AIL+ +V +   SL          G G +VA   D  GY +  VEY D+  +L
Sbjct:    1 MGTLPETQNLERYIQHAVVNVPKMDDALNFYTRGLGMRVIRTRTNPAKTNNVTFVGYGPETLDLKRVENGFRPGISSYNEYGAHFTLELIEKRVPPELKSDDEDAQPVVQAYEPGNGVQFLQIALPFLRVSQLAETGGNIRRAYGWIEVDAPGGLPLRIIIGERRDPFMFACFTVKDLSAAKSFYETRLGMRELPYQKARYNPDSPLEPKQPQESAYMGYSEDTFGLLLVQQDKKIAKKTPIEVGSVFDKLAILSRNVVEEGPSLNAGF-TGPVPGIGTNVAAFKDAQGYGLVLVEYDDFEKEL 303          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: Putative (glyoxalase n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYG2_9CHLO)

HSP 1 Score: 117 bits (293), Expect = 1.290e-24
Identity = 92/288 (31.94%), Postives = 137/288 (47.57%), Query Frame = 2
Query:  467 FAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAADGEEDADFFYDPGNGVQFLQIAV-DSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAREAGSPFEPEQPAGSVFMAYEG--EAFGVVLIPAAKGDQINPGSVVSVAILAEDVEKIAESLGGAVGVDSARGE-----GRSVAVADP-DGYSVRFVEYSDWRGQLPR 1303
            F QHA L+V D+  ++KF+  G+GMKV RTR     N   V FGPE L            T   GG F LEL                       N  QF Q A+ +S R+++V  +GG I  G+GY ++ AP G ++ +    RRDP   + V V D+  + ++Y  V GM        +E G  FEP +  GSV M Y    E  G++L+P +   + +    + +A+L +DV +  E L  A       GE     G  V++A P +G  + FV+Y+D+  + P+
Sbjct:  154 FLQHAVLEVKDLDKSVKFWTQGLGMKVNRTRG----NQAFVSFGPETL------------TAADGGKFALELVENPSTTQ--------------DNSGQFFQFALSNSLRVNRVANSGGDITFGFGYFEITAPDGYKVVVYIENRRDPFDLVGVYVNDVDAAAKYYERVFGMAADRSYGDKEVGR-FEPARIKGSVLMTYGAADENTGILLVPKSSSKEASSVQSIKIAVLDKDVNERKEKLVAAGLTPKFTGEVPGTGGTKVSLAVPREGVPLVFVDYNDFEREQPK 410          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JPX6_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 4.530e-20
Identity = 73/236 (30.93%), Postives = 117/236 (49.58%), Query Frame = 2
Query:  467 FAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAADGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKL-LSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAR------------EAGSPFEPEQPAGSVFMAYEGEAF--GVVLIPAAKGDQINPGS 1129
            F Q   + VPDM  A+ F+  G G  V+ T+     N T +GFGP+++                G  F LE+             E     ++ G  +Q++Q+A+  +R+SQV+K GG I+S YG+ Q+ APGGL L++ +  +RRDP  F+A++   +K SV  Y  + G+ K+     R            E    +EP++  GS+ M+Y  +    GV+L+P  KG ++  GS
Sbjct:  105 FYQSMRIGVPDMDKAVTFWTKGCGALVLDTKLVNGVNVTRIGFGPQSIRRDD------------GAKFALEMV------------EGPSTSFETGGVLQYVQLAIPIFRLSQVMKNGGDIQSAYGWTQLTAPGGLPLRVHIDESRRDPFEFVALRTSSLKSSVAHYESL-GLRKVDEKSGRKVELSINKNTIFENSDAYEPDREVGSILMSYGDKKAETGVLLLPPLKGAKLITGS 315          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2H0Q2_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 1.810e-19
Identity = 72/239 (30.13%), Postives = 117/239 (48.95%), Query Frame = 2
Query:  467 FAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAADGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKL-LSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAR-------------EAGSPFEPEQPAGSVFMAYEGEAF--GVVLIPAAKGDQ-INPGSV 1132
            F +   + VP++  A++F+  G G  ++ +R     N T +GFGP++                 G  F LEL             E A  F+   + +Q++Q+A+  +R+SQVV  GG I S YG+ +V+APGGL L++ +   RRDP  F+A++  +++ + + Y +V GM  L     +             E     EPE+ AGSV M +       GV+L+P  KG + ++PG V
Sbjct:  105 FCRGLRIGVPNLDEAVRFWTSGCGALLLDSRMIDGHNVTTIGFGPQSPRAED------------GAKFALELV------------EGAPTFFGDDSPLQYIQLAMPIFRLSQVVAYGGKILSAYGWTEVIAPGGLPLRVRIEETRRDPFEFIALRTSNLRAATKHYEEVLGMNTLSETSRKKFKLESINQNTIFENSDALEPEREAGSVLMTFGAAELTTGVLLLPPTKGRKALDPGFV 319          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: Uncharacterized (protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKT4_DIALT)

HSP 1 Score: 100 bits (249), Expect = 4.530e-19
Identity = 65/185 (35.14%), Postives = 103/185 (55.68%), Query Frame = 2
Query:  485 LQVPDMAAALKFYVDGVGMKVIRT-RAGPL-FNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAA----ADGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAREAGSP 1021
            ++VPD+AAA +F++DG+ M  +R+ R GP      VVG+G E L+               GG F+LEL      A A    A    DA+        + ++Q+ V + RIS +V++GG IES YGY++V +PGGL +++++  RRDP  F+A++V D++ +  +Y    GM ++P P  R    P
Sbjct:  131 VRVPDLAAARRFWLDGLKMSELRSSRVGPDGAEGIVVGYGREGLDEDD------------GGKFSLELVQASARAPAPARLALDAPDAE----AAGALLYVQLRVPNVRISGLVQSGGAIESAYGYVEVTSPGGLAVRVITAPRRDPVEFVALRVPDVEAAAAYYERAFGMRRIPSPPRRTERGP 299          
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IK92_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 9.840e-17
Identity = 69/226 (30.53%), Postives = 112/226 (49.56%), Query Frame = 2
Query:  455 DQARFAQHATLQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAAAADGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKL-LSGARRDPPMFLAVKVKDMKRSVQWYTDVAGMTKLPFPRAR---------EAGSPFEPEQPAGSVFMAY-EGEAF-GVVLIP 1096
            +++ F Q   + V D+  AL F+ +G+G  V  TR     N TVVGFGPE+L                G  F++EL S                    G+ +Q++Q+A+  +R+SQ +  GG I+S YG+  ++APGG  L++ +   RRDP  F A++V ++K +V+ +         PF + +         E    FEP++  G+  M+Y + EA  GV+L+P
Sbjct:  129 ERSHFLQRLAVPVDDIEGALNFWRNGLGALVRSTRIVDGRNVTVVGFGPESLRAVD------------GAKFSVELVSAPTSVE--------------GSQLQYIQLAMPVFRLSQAMAYGGDIKSAYGWTDLVAPGGTPLRVRIDETRRDPFEFAALRVSNLKAAVRHFEAFGMSAGEPFGKRKLSLLGNTAFEDRDAFEPDRELGATLMSYGDPEASTGVLLLP 328          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8234.16381.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
VOC1.020e-26793.22domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
VOC1.440e-7852.13domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized1.300e-5542.77protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Hypothetical1.720e-5442.91protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
VOC8.990e-5442.11domain-containing protein n=1 Tax=Vitrella brassic... [more]
Putative1.290e-2431.94glyoxalase n=3 Tax=Chloropicon primus TaxID=176429... [more]
Uncharacterized4.530e-2030.93protein n=1 Tax=Chrysochromulina tobinii TaxID=146... [more]
Hypothetical1.810e-1930.13protein n=1 Tax=Haptolina brevifila TaxID=156173 R... [more]
Uncharacterized4.530e-1935.14protein n=2 Tax=Diacronema lutheri TaxID=2081491 R... [more]
Hypothetical9.840e-1730.53protein n=1 Tax=Calcidiscus leptoporus TaxID=12754... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8234contigE_fasciculatus_S2_contig8234:1973..5152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score755.0
Seed ortholog evalue1.9e-215
Seed eggNOG ortholog2880.D8LU98
Model size1802
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,KOG2943@2759
Cds size1239
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842484.0537705-UTR-E_fasciculatus_S2_contig8234:1972..24621696842484.0537705-UTR-E_fasciculatus_S2_contig8234:1972..2462Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8234 1973..2462 -
1696842484.087443-UTR-E_fasciculatus_S2_contig8234:4291..43261696842484.087443-UTR-E_fasciculatus_S2_contig8234:4291..4326Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8234 4292..4326 -
1696842484.0975947-UTR-E_fasciculatus_S2_contig8234:5114..51521696842484.0975947-UTR-E_fasciculatus_S2_contig8234:5114..5152Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8234 5115..5152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842484.0673456-CDS-E_fasciculatus_S2_contig8234:2462..35951696842484.0673456-CDS-E_fasciculatus_S2_contig8234:2462..3595Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8234 2463..3595 -
1696842484.0771792-CDS-E_fasciculatus_S2_contig8234:4185..42911696842484.0771792-CDS-E_fasciculatus_S2_contig8234:4185..4291Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8234 4186..4291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8234.16381.1prot_E_fasciculatus_S2_contig8234.16381.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8234 2463..4291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8234.16381.1

>prot_E_fasciculatus_S2_contig8234.16381.1 ID=prot_E_fasciculatus_S2_contig8234.16381.1|Name=mRNA_E_fasciculatus_S2_contig8234.16381.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=413bp
MKARSSTCRCVRWAQLLVLGTCGDVRVWQAAGFGLGARPPVPVQQKQHTA
SCPATLVLMSDSDASDRSSSSSSRRGEGGAKPTGRGDFLRNSAAFLAGGS
AAIAATTTAGAGFPSAAEAIGDLYEFKDQARFAQHATLQVPDMAAALKFY
VDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFT
LELNSQKEEAAAADGEEDADFFYDPGNGVQFLQIAVDSYRISQVVKAGGI
IESGYGYLQVLAPGGLRLKLLSGARRDPPMFLAVKVKDMKRSVQWYTDVA
GMTKLPFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQINP
GSVVSVAILAEDVEKIAESLGGAVGVDSARGEGRSVAVADPDGYSVRFVE
YSDWRGQLPRLV*
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mRNA from alignment at E_fasciculatus_S2_contig8234:1973..5152-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8234.16381.1 ID=mRNA_E_fasciculatus_S2_contig8234.16381.1|Name=mRNA_E_fasciculatus_S2_contig8234.16381.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8234:1973..5152- (Ectocarpus fasciculatus EfasUO2)
TACACAACTACTACAGCCTTTTCGCACGCGTGGCCCAGGTATGAGAACAA TAGTCACCCTCAGTAACCGCCTCCCTTTTTGATATTGCTGGACGGGTGCT CACGATCTCGACCAGGCTGTTGTGACGAGTTTGCGTCATGCACCCCGTCC ATGGTTCATGAGCACTAGCTCTTGGAGCCACCTCCCTGTCTTATACCCAT GGGGTAGTCTACTCTTCTTCTCTGTTTCTCTCTCTCTGTCTGTCGTCTCT CTCTTTCAATTGCGAGGTTTGTGCCCAGGGTAGTCTAGTTGCCGCACCGT AATTGTTTACGATATGCATACAAGTACAATAAAACCGCTGTGACTGCAGT ATCGAGTATCGAGCGGCAATGCGTCTTGTTTGGACCAAACGGCCAGTAAG CCTGCAACAAAACGGAGCGCAGCCAGACAACTGAACGCCACGCACAGGGC TTTTGGGTCAGACTGCGGTCAGCCGGTCCATCCCGCTGCTGTGTACGTGC GTCTGGTGTTTCAAGTTGTTGCTCTCTCCTACTCTCCTACTTCTGCGCGA ACCACACCGTATGTGGAGCCGATGTTACGTCCCCCGCAAACCTGGAGACA TACCGCGACAAGCGGTAGTTCTGGTCATAGCTGTGAAGCCTTCAGCAGGA AACACGTTGTGAGCGACACAAGTATGAAACACGCACAATCCCATGGTTTT CTGGCATACTGCTGATGTTGTGCCCGCTCGCTTTTCACCGCTGGAGAGGA CATGACACCATTATTGCATTTCATATACTTGTAGATCTAAAGTAGCGAAC ATCACGCCGTTCAAACGTAAACTCAGGTCGAGCCGGGAGTGGGCTAGGTT GGGATCAAACGATGAAAGCGCGTTCCAGCACATGCCGCTGCGTGAGATGG GCGCAACTCCTCGTGCTCGGCACGTGCGGAGACGTTCGTGTCTGGCAAGC GGCAGGCTTCGGGCTAGGTGAGTGGCAAGGGCCACAGCCTAAAATACGCA CCATTCCAGTTTCTCTCAGGTTTGAAAGCCATCGCACGACCTCGGGCGCG AGCAGTGGCGAAGTACAACTACATTACCAGTGTTGTGGGGGTATGCGGCG ATATCAGTCAACTCTTGTCGGTAAGGTGGTCCAGAGCGAAAAGGCCCCCG TCCGGTCTCTCGCCGTGGATGCAGGCCGCCGTCCCTTTCTTCGCATGCTC AGGCGTTAGGAGTGACAGGAACCTATGCATACGTAAATTTGAGATCGCCC CTCGTTCGTCCCACTTGCTCTTTGTATTTGCAACCGCACCTGCCCTGTGT GTTGTATTAATAGATCGTTCCCTTGAGAACGGTCTACTGCTGCCGAACGC TGGGGCGACTTTTTACGGGGATGAGCGGGACTTCTTGTCACCCAGCAAAC ATGCCACACAGATACATACTCGGCCTCTTTCAATCCCCTTTCGCTCTTCG CTGCCACTCGCCGGTAATGAATAACCGACCTTCCGCCGTCGTCTCCCTCT TTTTTTCTTCGTCCTTCCTCCCGTTGTTGGTCCTTTTACGAACGATGTGC TCTGCAGGAGCCCGGCCTCCTGTGCCGGTGCAACAAAAGCAGCACACAGC ATCGTGTCCGGCGACACTGGTACTCATGTCGGACTCGGACGCATCTGATC GGAGCAGCAGCAGCAGCAGCAGAAGAGGAGAAGGAGGAGCCAAACCTACA GGTAGAGGAGACTTCTTGCGCAATTCCGCCGCGTTTCTCGCCGGAGGCAG CGCCGCAATCGCGGCGACAACAACAGCGGGTGCTGGCTTCCCGAGCGCCG CCGAGGCCATCGGGGACCTGTACGAGTTCAAGGACCAGGCACGCTTCGCC CAACACGCCACCCTTCAGGTGCCGGACATGGCGGCCGCGCTCAAGTTCTA CGTGGACGGAGTCGGCATGAAGGTGATCCGCACGCGGGCGGGCCCCCTGT TCAACACGACCGTCGTCGGCTTCGGCCCGGAGGCGCTCGAAGTGCCGCCG TCGTTCGTCTTCGGCGTGAGCTCCACGAACGGTTACGGGGGCCACTTCAC CCTGGAGCTCAACTCGCAGAAGGAGGAGGCGGCGGCGGCGGACGGGGAAG AGGACGCGGACTTCTTTTACGACCCCGGCAACGGCGTCCAGTTCCTTCAG ATCGCGGTCGACTCGTACCGGATATCCCAGGTGGTCAAGGCCGGGGGAAT CATCGAGTCCGGGTACGGGTACCTCCAGGTCTTGGCTCCCGGAGGGCTTC GGCTGAAGCTCTTAAGCGGCGCGAGACGAGACCCTCCCATGTTCCTCGCC GTCAAGGTGAAGGACATGAAGAGGTCGGTTCAGTGGTACACGGACGTCGC CGGGATGACCAAGCTCCCGTTCCCGAGAGCCCGGGAGGCCGGCTCGCCCT TCGAGCCGGAGCAGCCCGCGGGCAGCGTCTTCATGGCCTACGAGGGGGAG GCCTTCGGAGTCGTCCTGATCCCCGCCGCGAAGGGGGACCAGATCAACCC GGGCAGCGTTGTGTCCGTCGCAATTCTGGCGGAGGACGTCGAGAAGATAG CGGAAAGCCTGGGGGGGGCGGTTGGCGTGGACAGCGCGAGAGGGGAGGGG AGGTCCGTGGCCGTCGCAGACCCGGACGGGTATAGCGTGAGGTTTGTGGA GTACAGCGATTGGAGGGGGCAGCTCCCCCGCTTGGTGTAAGGTCGTCCTA TTTGCGTGATAGCAGTTCCGCTCCACATTTAGTTCTTATGGCAGAGGAGT TGTTCGAAGATTGCGGTGTACGCTCGGAAGGGGAGGGGCGTCCCAACAAG CGGCAGGTAGTTGTGTAAAATACTTGGTCATGAAAGCCTTTGGGCAAGTG AACCCCTATTACACCATGAAATATTGTGGTCAGCGTAGCATAGCTTGGTG TTGATTGATGGTTAGAGGTATCATATTGCGGAGAAGCTTGCTGCTGCAAG ATTGAATCTATTGCTCTTGCAATTCAGCAACGGACCGTTACGGTCCATCG GGGGGCACTTCATTGGGTACGGTTTCACGTCGTACGCGCGTTGGCGTGGG ATCGAAAGGTGGTTGAGGTTACTCACGGCGTTCGCGCCGGTTCCTTGCAT AGAGAAACGCTACGAGTAATGGTGGCACCAACACACGCTTATCATCTCAG CATGTGGACAACCATAGTGGCTGGATACCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8234:1973..5152-

>mRNA_E_fasciculatus_S2_contig8234.16381.1 ID=mRNA_E_fasciculatus_S2_contig8234.16381.1|Name=mRNA_E_fasciculatus_S2_contig8234.16381.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1239bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8234:1973..5152- (Ectocarpus fasciculatus EfasUO2)
ATGAAAGCGCGTTCCAGCACATGCCGCTGCGTGAGATGGGCGCAACTCCT
CGTGCTCGGCACGTGCGGAGACGTTCGTGTCTGGCAAGCGGCAGGCTTCG
GGCTAGGAGCCCGGCCTCCTGTGCCGGTGCAACAAAAGCAGCACACAGCA
TCGTGTCCGGCGACACTGGTACTCATGTCGGACTCGGACGCATCTGATCG
GAGCAGCAGCAGCAGCAGCAGAAGAGGAGAAGGAGGAGCCAAACCTACAG
GTAGAGGAGACTTCTTGCGCAATTCCGCCGCGTTTCTCGCCGGAGGCAGC
GCCGCAATCGCGGCGACAACAACAGCGGGTGCTGGCTTCCCGAGCGCCGC
CGAGGCCATCGGGGACCTGTACGAGTTCAAGGACCAGGCACGCTTCGCCC
AACACGCCACCCTTCAGGTGCCGGACATGGCGGCCGCGCTCAAGTTCTAC
GTGGACGGAGTCGGCATGAAGGTGATCCGCACGCGGGCGGGCCCCCTGTT
CAACACGACCGTCGTCGGCTTCGGCCCGGAGGCGCTCGAAGTGCCGCCGT
CGTTCGTCTTCGGCGTGAGCTCCACGAACGGTTACGGGGGCCACTTCACC
CTGGAGCTCAACTCGCAGAAGGAGGAGGCGGCGGCGGCGGACGGGGAAGA
GGACGCGGACTTCTTTTACGACCCCGGCAACGGCGTCCAGTTCCTTCAGA
TCGCGGTCGACTCGTACCGGATATCCCAGGTGGTCAAGGCCGGGGGAATC
ATCGAGTCCGGGTACGGGTACCTCCAGGTCTTGGCTCCCGGAGGGCTTCG
GCTGAAGCTCTTAAGCGGCGCGAGACGAGACCCTCCCATGTTCCTCGCCG
TCAAGGTGAAGGACATGAAGAGGTCGGTTCAGTGGTACACGGACGTCGCC
GGGATGACCAAGCTCCCGTTCCCGAGAGCCCGGGAGGCCGGCTCGCCCTT
CGAGCCGGAGCAGCCCGCGGGCAGCGTCTTCATGGCCTACGAGGGGGAGG
CCTTCGGAGTCGTCCTGATCCCCGCCGCGAAGGGGGACCAGATCAACCCG
GGCAGCGTTGTGTCCGTCGCAATTCTGGCGGAGGACGTCGAGAAGATAGC
GGAAAGCCTGGGGGGGGCGGTTGGCGTGGACAGCGCGAGAGGGGAGGGGA
GGTCCGTGGCCGTCGCAGACCCGGACGGGTATAGCGTGAGGTTTGTGGAG
TACAGCGATTGGAGGGGGCAGCTCCCCCGCTTGGTGTAA
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