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Homology
BLAST of mRNA_E_fasciculatus_S2_contig8218.16372.1 vs.
Match: Endo/exonuclease/phosphatase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L123_9PHAE) HSP 1 Score: 366 bits (940), Expect = 5.750e-113 Identity = 246/295 (83.39%), Postives = 250/295 (84.75%), Query Frame = 1
Query: 1 YIPEDDTDASLLAQVADATTESRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GAAASPVRSEDGNFVDGVGARLGVGGGRGGASAGAKRRINLSDHHGVAAEFTARDPEGGXXXXXXXXXXXIDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEASNRRTSHLRTAKALATLWLALLAGGAVAKSDDGFMGYIARGAAGVFGGFLCTAASALFLLYWFSAKEEVQGLKEVFQTATNYERHLPMEEAFPDGGFDASQLYSYMEQNFR 864
+IP+DDTDASLLAQVAD TESR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAASPVRSEDGNFVDGVGA L GAKRRINLSDHHGV AEFTARDPEG +DGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEA NRRTSHLRTAKALATLWLALLAGGA+AKSD G MGYIARGAAGVFGG LCTAASALFLLYWFSAKEEVQGLKEVFQTATNYERHLPMEEAFPDGGFD QLYSYMEQNFR
Sbjct: 332 HIPQDDTDASLLAQVADTRTESRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSQPRGGVRAAAASPVRSEDGNFVDGVGAGLXXXXXXXXXXDGAKRRINLSDHHGVGAEFTARDPEGDDDDNHSSLDDDVDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEALNRRTSHLRTAKALATLWLALLAGGAMAKSD-GSMGYIARGAAGVFGGVLCTAASALFLLYWFSAKEEVQGLKEVFQTATNYERHLPMEEAFPDGGFDTLQLYSYMEQNFR 625
BLAST of mRNA_E_fasciculatus_S2_contig8218.16372.1 vs.
Match: Similar (to neutral Sphingomyelinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH10_ECTSI) HSP 1 Score: 310 bits (794), Expect = 6.500e-93 Identity = 162/180 (90.00%), Postives = 164/180 (91.11%), Query Frame = 1
Query: 325 HHGVAAEFTARDPEGGXXXXXXXXXXXIDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEASNRRTSHLRTAKALATLWLALLAGGAVAKSDDGFMGYIARGAAGVFGGFLCTAASALFLLYWFSAKEEVQGLKEVFQTATNYERHLPMEEAFPDGGFDASQLYSYMEQNFR 864
H VAAEFTARDPEGG XX IDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEASNRRT HLRTAKALATLWLALLAGGAVAKSD G MGYIARGAAGVFGG LCTAASALFLLYWFSAK+EVQGLKEVFQTATNYERHLPMEEAFPDGGFD SQLYSYMEQ+FR
Sbjct: 336 HRAVAAEFTARDPEGGDDXXHSSLDDDIDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEASNRRTCHLRTAKALATLWLALLAGGAVAKSD-GLMGYIARGAAGVFGGVLCTAASALFLLYWFSAKQEVQGLKEVFQTATNYERHLPMEEAFPDGGFDTSQLYSYMEQHFR 514
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 311.6 |
| Seed ortholog evalue | 3.1e-82 |
| Seed eggNOG ortholog | 2880.D8LH10 |
| Preferred name | SMPD2 |
| Model size | 2436 |
| KEGG rclass | RC00017,RC00425 |
| KEGG ko | ko:K01117,ko:K12351,ko:K12818 |
| KEGG Reaction | R02541 |
| KEGG Pathway | ko00600,ko01100,ko03040,ko04071,map00600,map01100,map03040,map04071 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004620,GO:0004629,GO:0004767,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005773,GO:0005783,GO:0005886,GO:0005887,GO:0005901,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006672,GO:0006684,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0008081,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009605,GO:0009612,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019637,GO:0019867,GO:0023052,GO:0030148,GO:0030149,GO:0031090,GO:0031224,GO:0031226,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032995,GO:0034248,GO:0034250,GO:0034641,GO:0035556,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045834,GO:0046466,GO:0046467,GO:0046513,GO:0046519,GO:0046521,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051716,GO:0052712,GO:0052713,GO:0052714,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090153,GO:0090154,GO:0097164,GO:0098573,GO:0098588,GO:0098589,GO:0098590,GO:0098805,GO:0098857,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903338,GO:1905038,GO:2000303,GO:2000304 |
| Exons | 5 |
| EggNOG free text desc. | inositol phosphosphingolipid phospholipase activity |
| EggNOG OGs | KOG3873@1,KOG3873@2759 |
| EC | 3.1.4.12,3.6.4.13 |
| Cds size | 714 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03041 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842483.0493264-UTR-E_fasciculatus_S2_contig8218:173..326 | 1696842483.0493264-UTR-E_fasciculatus_S2_contig8218:173..326 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8218 174..326 + |
| 1696842483.126625-UTR-E_fasciculatus_S2_contig8218:2887..4456 | 1696842483.126625-UTR-E_fasciculatus_S2_contig8218:2887..4456 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8218 2888..4456 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842483.0649242-CDS-E_fasciculatus_S2_contig8218:326..506 | 1696842483.0649242-CDS-E_fasciculatus_S2_contig8218:326..506 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8218 327..506 + |
| 1696842483.074855-CDS-E_fasciculatus_S2_contig8218:1000..1144 | 1696842483.074855-CDS-E_fasciculatus_S2_contig8218:1000..1144 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8218 1001..1144 + |
| 1696842483.0861225-CDS-E_fasciculatus_S2_contig8218:1556..1717 | 1696842483.0861225-CDS-E_fasciculatus_S2_contig8218:1556..1717 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8218 1557..1717 + |
| 1696842483.1040976-CDS-E_fasciculatus_S2_contig8218:2310..2436 | 1696842483.1040976-CDS-E_fasciculatus_S2_contig8218:2310..2436 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8218 2311..2436 + |
| 1696842483.116256-CDS-E_fasciculatus_S2_contig8218:2784..2887 | 1696842483.116256-CDS-E_fasciculatus_S2_contig8218:2784..2887 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8218 2785..2887 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8218.16372.1 >prot_E_fasciculatus_S2_contig8218.16372.1 ID=prot_E_fasciculatus_S2_contig8218.16372.1|Name=mRNA_E_fasciculatus_S2_contig8218.16372.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=238bp
MGSSNSSSRDSQPPGAAASPVRSEDGNFVDGVGARLGVGGGRGGASAGAK RRINLSDHHGVAAEFTARDPEGGDDDDDNSLDDDIDGMPPPRRGLRHSQS IPGGTFPQGPLLARALTEIDRGIEEASNRRTSHLRTAKALATLWLALLAG GAVAKSDDGFMGYIARGAAGVFGGFLCTAASALFLLYWFSAKEEVQGLKE VFQTATNYERHLPMEEAFPDGGFDASQLYSYMEQNFR* back to topmRNA from alignment at E_fasciculatus_S2_contig8218:174..4456+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig8218.16372.1 ID=mRNA_E_fasciculatus_S2_contig8218.16372.1|Name=mRNA_E_fasciculatus_S2_contig8218.16372.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4283bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8218:174..4456+ (Ectocarpus fasciculatus EfasUO2) TACATCCCGGAAGATGACACCGATGCTAGCCTGCTCGCCCAAGTCGCCGA
CGCGACTACGGAGAGCCGCAACAACAACAACAACACCTCGCCAGGGGCCC
CGCAGCGGCGTGGGAGGGGGGGGGCAGAGGCGGCAGCATTGGCGTCGCCG
CTCATGGGCAGCAGCAACAGCAGCAGCAGGGATAGCCAGCCCCCGGGGGC
GGCAGCGTCGCCCGTGCGATCAGAGGACGGGAATTTCGTGGACGGTGTTG
GGGCTAGGTTGGGTGTGGGCGGGGGTAGGGGCGGAGCGAGCGCGGGAGCG
AAACGCAGGATCAATTTGTCCGACCACCACGGGGTGAGGCGAGGACTTTA
GCCGCGATGCCGCCCAGGCTGGGCTTGTTTCTCGCAGAGGGCGTCTCATG
GCATGGTTGGCTGTTGCTTTGGCCGGGACGATGGCGGCATCGATTGAGAT
ATGTTAGTTATAGTTTTTTTTTTTCGCGAGATGGATAGTCTTACGGTCGG
TCGCCTTGGCGTAATCGATACACGTTTCCCTTCTTGTCGCCCTCACGATG
TGGTACCCCCCTCCTCCTCCGGTTCATCCTCGTGACAAAATAGCCTGGGC
CGGCGAGAAACCGGCGTATCCCTCCGTCCGGGCATTGTGGGGATGCGAGG
TCAATGGTCTAACGATTCCGGCATGCGTTGGCATGAGCACCCCCCTCCCC
CCCTCCAAAGAAAAATACCCACGGTGCCCCAAGTATGCTTCCTCATCTCT
CAGTCTTATTGCGCCTCGAACTCGCGTGTGTTTCTGCGCCCTGCTCCTAA
CCCTCACCCTGCTCCTTGCTGTGGCAGGTTGCCGCGGAGTTTACGGCTAG
AGATCCCGAAGGCGGCGACGACGACGACGACAACTCGCTGGACGACGACA
TCGACGGGATGCCCCCGCCACGCCGGGGCTTGCGGCACTCCCAATCCATC
CCGGGAGGGACGTTTCCTCAGGTGCTGATTAGTGGTCTTCGTATTGCCAC
CTGGACGCTGCTGCATCCAAGCTGTGTTCGTTTGCGTATGTGTTGCCATT
GTGGCAGTGGTGTGTTGTGTGTTGTGTTGATCCGTCGTGGTGCTGAAGAC
CTAGACTAATCCTTTTTTTGTTCTTGTTTGGGGTGGCGTGTGGCCCGGAG
TGCTTCTCATCTCCCTCCGAGAGGGTATTGGTAAGGGAGAGGAGGCGTTG
GAAGTTGGAGGTGGTCGGGATGAAATTTTGACGAGAAGAAAGCACCCAAC
CCTCCCCGCAGTCACGCTACTGTTGCTGTAAAAAAAAACGCCCTGTCGGG
AGAAACCAACCCAGCTCCTCTCCTCTCCTCTCTGTCGCACCCTCTCTCTC
TCCCCCCTGGCCTTCCGGGGACCAACCACACAGGGGCCGCTGCTAGCGCG
AGCGTTGACTGAAATCGATCGTGGGATCGAGGAGGCGTCAAACCGAAGGA
CTTCCCACCTGCGCACCGCTAAGGCTCTGGCGACGCTATGGCTGGCACTG
CTGGCTGGCGGAGCCGTGGCCAAATCGGATGACGGTTTCATGGGGTGAGA
AAGACTCTCTCTCTCTCCGGTGGTGGGGAGTGGGGACGATTTCCTCTGTG
TTTTTTTCGCATGCTTTTCCCCGGGGGGCGGGGGTACCCATGTTTAGGGT
GCCTTAGTTGTTAGACGGTTGACCACGCGTCCTCGAGAGGACGGAGCATG
CTTTCGTTTTTCGTTTTTTTTTTTTCATTTTTTTCCCGGTGGAGGGAGGG
AAGGTTTTCATGCAGGAAACCCGTGGGATTGATGGAGCCACATAACGCCG
GGGCACGGTGCGCGAAAGTTAAAGTTCGTTGCTGCAGTCTGCGGAACATG
TACTGCTGTTGCGGGTAAACCTACCGCTTTGTTGTTTTTGTCGCGACAAC
TGGGGGGAAGTGCCGGTTTGCGGGTCTATTTTGGAGGCGTGTGTTATTGC
GCCGGGCACACTCTACATACGGGCGGGCGGTGATACGAATTTCACTCATG
CCCTCTTCTGCTTGGAGTTCGGTGTTGTCGTCATCAAAAGACGCTGCTCC
TTGTACGTGGCGACGATACTATCTCTTCACCCAACCTTTTCATCTGCCGG
TGTCGGTGTCTTGATTCAATCCCCTCGGACTCCCCAGGTACATCGCGAGA
GGAGCGGCTGGGGTGTTTGGGGGTTTCCTGTGCACAGCGGCGTCGGCGTT
GTTTCTGCTGTACTGGTTCTCGGCGAAGGAGGAGGTTCAAGGACTGAAGG
AGGTCTTCCAGACGTAAGTCAAGTCTGTTGCCCGTCCTCTTTCTCTCTGA
GTAATACAGCAGTACCCTCTGTCATGTAGTTCAAGGCAGTGGGTCGTTTT
CAAGCGAACCTGACGCGCTAAGTCGGGTCTAACAGCACGCGACGTTTTTG
GCTGCTTGCGGGGGATGCACGGAGAAAACACCCGGTCTCTTTTTTTGGAG
TCTCTTAAAATTTCACGGCGTCTTCCCCCCCCACCCCCCCCACCCCCCCC
CTCTCTCTGTGTCTCTGTCTCTGTCTCCGTGTGTGTCTCTCTCTTTCTGT
GTGTGTCTCCCCCTCCCTCGCCCCCCTCTCTCTGCTTGCAACACTTGCGT
ACGTCACGAAGCGCTACGAACTACGAGCGGCACCTCCCAATGGAGGAGGC
GTTTCCAGACGGGGGCTTCGACGCCTCGCAGTTATACAGCTACATGGAAC
AGAACTTCCGCTAGCTTTTCCAGCAGGGCGACATAGCAACACGTAACGCG
ATTCTATCTGTCTGTCTCTTCTTTCCCTACCCTGTTTGTTTTACAGTCTT
TAGCGCAGGCAACCTAGCTACACATTTTACAGGCGCGTCGATGTCAGTTA
CAGAGTTGTGGGATCTAGGTATAATAAATACAGTGATAGAAGAGTCGTCT
ATCGATGAGCGAAAGGATGCTTAGTCTGCATTCTCACCGCCTGTTAAATG
TACTGCTGTGTAGGCACATGTACTCTTGGCCCGGTTCATCCCTCTTGCTC
TAGGCAGAACCGGCGATGGGTTCTATTCCATTCCACTTCCACTTCCATTC
CACTTTACGTCTGGCGGCAGTTTTCTTCAACAGTCGACGTTGCTAGGGAA
TCGTATGGTAGGTGTAGTTCTATTTTAGTTTGGAGCAGCATCAGATCTTC
TTCCTTTCGTGGACCGGTAGCAACCGTGTAGCCATCCGGGATAATACTGT
ATTCGATAAACTAGATTCGGAAAGTAGGTCGAAGGTTCTACAATATTACC
ATGGTCTGCTTTCGTGGGTCCCCCCCCGCAACAGCACTTGTCCTTTTCCA
CAAGCGTTCCGTGGAGTGTTTGGGGCGGTTGACCCTGTATTCGATGCCCG
GTTATGCTGCAGTTTCCGGTTCAACCGGGGTATTCCATGTAAGTTTCGTG
GCGTTTTTTTGTTGCGGCTGCCTTCCGGGCCTTGGGGGGGTCGACGGATA
GTGCGAGCATGTGTTGTTGGGGGGGGTAAAAGTGGGACGGCACCGAATAG
ATAGGTGTTTAGGGGGGTAGAATTGTAGAATGTACAGCGTCATCGTCGGA
AAAGGTTGGGTGTTTAAAGTATGTTTTTTCTGGTTGTGCACTCATGCGTT
CCTTCATGTGTTTGTGTTTACAATACACGCTCAAAGTTTTTTCTGCCACT
GTGTGTATGGTTTCCGTCCGTGTGTGGCTGGCTTTCCATGGACGGCTCAG
AGGTGCACGGTATCTGTTTGGGGTGCTCAGCAGAGTATTGATCTACGGGG
CCTTCAAGGTTTACGTGGATGATGTGTGGATGATGGGCATGCATGGTGCG
CGGGCCCCTTCTTGGCTTCCCCCACATGTCATGTCTAGATACCACTCGTT
AATGATGAGATACAAGGTCTTGAGTCACTTCTTTCTGTTTCGGCCTCTGA
CGAAGCTGCCGTACCCAAACAGTACATATCTCTCATGAGGTTAGCGATGG
CACATTAGAATGTGCGTGTTCCGCATGGCATGGCGTTTGTTGCTGTTGTT
GCTGTTATTTGTTGTTTTCTGCGAATGTATGCATTCAAGAGGTTCGTTTG
GCGCTGCGACGTACAGTAAGGATTGGGTTGGGTTGATTTGGCAGCCGTGT
CTCGAAACGGGGGGGTATTTAATTATGCACTTTTCACCCTCCGGACCTAT
CTAGGGTATTTTAAACACCTCCTCTCCGGAGGTTGTTTGACACCAACAAC
CCCCAATCGCAATTGGGAACAACTAGAGGCTGCTCCAGAAGGAAGAGTAT
TCGGGGTGCATGTTTGCATGAAAAAGTTCCGAA back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig8218:174..4456+ >mRNA_E_fasciculatus_S2_contig8218.16372.1 ID=mRNA_E_fasciculatus_S2_contig8218.16372.1|Name=mRNA_E_fasciculatus_S2_contig8218.16372.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=714bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8218:174..4456+ (Ectocarpus fasciculatus EfasUO2) ATGGGCAGCAGCAACAGCAGCAGCAGGGATAGCCAGCCCCCGGGGGCGGC AGCGTCGCCCGTGCGATCAGAGGACGGGAATTTCGTGGACGGTGTTGGGG CTAGGTTGGGTGTGGGCGGGGGTAGGGGCGGAGCGAGCGCGGGAGCGAAA CGCAGGATCAATTTGTCCGACCACCACGGGGTTGCCGCGGAGTTTACGGC TAGAGATCCCGAAGGCGGCGACGACGACGACGACAACTCGCTGGACGACG ACATCGACGGGATGCCCCCGCCACGCCGGGGCTTGCGGCACTCCCAATCC ATCCCGGGAGGGACGTTTCCTCAGGGGCCGCTGCTAGCGCGAGCGTTGAC TGAAATCGATCGTGGGATCGAGGAGGCGTCAAACCGAAGGACTTCCCACC TGCGCACCGCTAAGGCTCTGGCGACGCTATGGCTGGCACTGCTGGCTGGC GGAGCCGTGGCCAAATCGGATGACGGTTTCATGGGGTACATCGCGAGAGG AGCGGCTGGGGTGTTTGGGGGTTTCCTGTGCACAGCGGCGTCGGCGTTGT TTCTGCTGTACTGGTTCTCGGCGAAGGAGGAGGTTCAAGGACTGAAGGAG GTCTTCCAGACCGCTACGAACTACGAGCGGCACCTCCCAATGGAGGAGGC GTTTCCAGACGGGGGCTTCGACGCCTCGCAGTTATACAGCTACATGGAAC AGAACTTCCGCTAG back to top
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