mRNA_E_fasciculatus_S2_contig8138.16290.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8138.16290.1
Unique NamemRNA_E_fasciculatus_S2_contig8138.16290.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Match: PX (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ85_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 4.460e-153
Identity = 219/231 (94.81%), Postives = 226/231 (97.84%), Query Frame = 1
Query:    1 KVSFRGSNWVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFLGRALVKIQVTNSDSMVNFLEVAKNVQMEEPDDDVNSDYDDLVAEYEERETQRLEDLVQTFQDRMIDSQSVRVEPRNDAEVEARRQKLLQACNGFREHDDHLKKFLNPSPNPQVQNVDQTIDTVNFVHDQNFENSVVGASIELSSKLQTSALTQTQYHGGHGLVTSMGNI 693
            +VSFRGSNWVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFLGRALVKIQVTNSDSM++FLEV KNVQ+E PDDD NSDYDDLVAEYEERETQRLEDLVQTFQDRMIDSQS+RVEPRND EVEARRQKLLQACNGFREHDDHLKKFLNPSPNPQVQNVDQ IDTVNFVHDQNFEN+VVGASI+LSSKLQTSALTQTQYHGGHGLVTSMGNI
Sbjct:   25 EVSFRGSNWVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFLGRALVKIQVTNSDSMLSFLEVGKNVQIEAPDDDPNSDYDDLVAEYEERETQRLEDLVQTFQDRMIDSQSIRVEPRNDVEVEARRQKLLQACNGFREHDDHLKKFLNPSPNPQVQNVDQAIDTVNFVHDQNFENNVVGASIDLSSKLQTSALTQTQYHGGHGLVTSMGNI 255          
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Match: Phox (homologous domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.030e-32
Identity = 77/170 (45.29%), Postives = 99/170 (58.24%), Query Frame = 1
Query:    1 KVSFRGSNWVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFLGRALVKIQVTNSDSMVNFLEVAKNVQMEEPDDDVN-SDYDDLVAEYEERETQRLEDLVQTFQDRMIDSQSVRVEPRNDAEVEARRQKLLQACNGFREHDDHLKKFLNP 507
            +V FRG+ W +++RFNDF  LHQ L R F    +  LP +RFF RFDP FLNERS  L  FL   L  + V  S ++V+FLEV  NV  E P       ++D    E  E+E  RL  LV+     +ID     VEP  ++EV ARR+KLL+AC+GFR H  HL+ F  P
Sbjct:   24 EVGFRGAMWHLQRRFNDFAALHQDLRRHFPAAHIPDLPPKRFFGRFDPQFLNERSAHLHQFLQEVLATVPVVESQALVDFLEVPGNVAWERPMGAGGVGEFDRSGKEAVEQE--RLVALVEETAKALIDVSRTGVEPLEESEVMARREKLLRACDGFRAHAAHLRGFFKP 191          
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVR5_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 5.450e-14
Identity = 57/188 (30.32%), Postives = 94/188 (50.00%), Query Frame = 1
Query:    1 KVSFRGSNWVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFLGRALVKIQVTNSDSMVNFLEVAKNVQMEEPDDDVNSDYDDLVAEYEERETQRLEDLVQTFQDRMIDSQSVRVEPRNDAEVEARRQKLLQACNGFREHDDHLKKFLNPS---PNPQVQNVDQTIDTV 555
            +V+F    W++ +RFNDFV L + L  E R     P PK+RFF RFDP+FL ERS  LQ F+     +  V  S+ +  FLE + +V  +             +    E E  RL  LV+     ++    +  E  + +++ A+R+ L +A +G +    HL++ + P+   P+ +VQ  D  +D +
Sbjct:   23 EVTFAQLQWLVFRRFNDFVELWETLRDEGRQPRQEP-PKKRFFGRFDPNFLKERSDQLQDFIDSVARETSVVESEGLRGFLEFSNHVDWDPSGPGAMGGGGSEIRALAEAE--RLAVLVEATARALVPVGRMTGEEIDSSQMVAQRKALFKATDGLKAQQAHLQQSMLPTFPVPSTRVQGQDAALDAL 207          
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Match: PX (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8M7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.080e-7
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 1
Query:    4 VSFRGSNWVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFLGR--ALVKIQVTNSDSMVNFLEVAKNVQMEEPDDDVNSDYDDLVAEYEERETQRLEDLVQTFQDRMIDSQS----VRVEPRNDAEVEARRQKLLQACNGFR 471
            V+    +W I +RFNDF  LH+ L R F     G LP +++F RF+P+FL ER  +LQ +L    +L      + +  V F EV +++  ++ +D V+ D   L +  +  E  R+  ++       I++ S    V +E  +  E+  +R KLLQ  +G R
Sbjct:   22 VTHGDQSWSILRRFNDFSHLHEALCRSFPHFP-GRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFPERSQEGCV-FFEVDRHLAGQDAEDKVHLDASALGSPAQVEEA-RISSILWEASHAFINTSSPLHQVSIEQMDPEELAQQRSKLLQRTSGLR 180          
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEF3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.510e-7
Identity = 27/76 (35.53%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   16 GSNWVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFLGRALVKIQVTNSDSMVNFL 243
            G+++ + +RFN F  LH+ LS+EF    + PLP++   NRF+ +F+  R ++L+ FL R  + +++  S   V FL
Sbjct:   38 GTSFSVIRRFNHFKVLHKELSKEFPGAIIPPLPEKSLLNRFEEEFVETRRRNLERFLERVALHLELRTSAHFVKFL 113          
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Match: Hypothetical (protein n=3 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCE3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.530e-6
Identity = 27/76 (35.53%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   16 GSNWVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFLGRALVKIQVTNSDSMVNFL 243
            G+++ + +RFN F  LH+ LS+EF    + PLP++   NRF+ +F+  R ++L+ FL R  + +++  S   V FL
Sbjct:   38 GTSFSVIRRFNHFKVLHKELSKEFPGAIIPPLPEKSLLNRFEEEFVETRRRNLERFLERVALHLELRTSAHFVKFL 113          
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Match: PX (domain-containing protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RI99_TRIAD)

HSP 1 Score: 55.5 bits (132), Expect = 8.370e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   13 RGSN----WVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFL 186
            RGSN    W +++R+NDFVTLH  L    RD    PLP ++ F   D DF+ +R Q LQ ++
Sbjct:   38 RGSNPENFWKVQRRYNDFVTLHAALQISGRDL---PLPPKKLFGNLDKDFVAKRKQQLQVYV 96          
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Match: PX (domain-containing protein kinase-like protein n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369SL54_9METZ)

HSP 1 Score: 55.5 bits (132), Expect = 9.240e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   13 RGSN----WVIEKRFNDFVTLHQGLSREFRDTDLGPLPKRRFFNRFDPDFLNERSQDLQAFL 186
            RGSN    W +++R+NDFVTLH  L    RD    PLP ++ F   D DF+ +R Q LQ ++
Sbjct:   38 RGSNPENFWKVQRRYNDFVTLHAALQISGRDL---PLPPKKLFGNLDKDFVAKRKQQLQVYV 96          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8138.16290.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
PX4.460e-15394.81domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Phox1.030e-3245.29homologous domain-containing protein n=1 Tax=Tribo... [more]
Hypothetical5.450e-1430.32protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
PX1.080e-730.86domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Hypothetical2.510e-735.53protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Hypothetical1.530e-635.53protein n=3 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
PX8.370e-543.55domain-containing protein n=1 Tax=Trichoplax adhae... [more]
PX9.240e-543.55domain-containing protein kinase-like protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8138contigE_fasciculatus_S2_contig8138:902..6801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1076
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-02_005140.1
Cds size468
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8138.16290.1prot_E_fasciculatus_S2_contig8138.16290.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8138 2255..6421 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.4593723-UTR-E_fasciculatus_S2_contig8138:901..10351696842475.4593723-UTR-E_fasciculatus_S2_contig8138:901..1035Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8138 902..1035 +
1696842475.473174-UTR-E_fasciculatus_S2_contig8138:2160..22541696842475.473174-UTR-E_fasciculatus_S2_contig8138:2160..2254Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8138 2161..2254 +
1696842475.5476785-UTR-E_fasciculatus_S2_contig8138:6421..68011696842475.5476785-UTR-E_fasciculatus_S2_contig8138:6421..6801Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8138 6422..6801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.4855876-CDS-E_fasciculatus_S2_contig8138:2254..22721696842475.4855876-CDS-E_fasciculatus_S2_contig8138:2254..2272Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8138 2255..2272 +
1696842475.4966598-CDS-E_fasciculatus_S2_contig8138:3107..31781696842475.4966598-CDS-E_fasciculatus_S2_contig8138:3107..3178Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8138 3108..3178 +
1696842475.5056522-CDS-E_fasciculatus_S2_contig8138:4227..42941696842475.5056522-CDS-E_fasciculatus_S2_contig8138:4227..4294Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8138 4228..4294 +
1696842475.514983-CDS-E_fasciculatus_S2_contig8138:4926..50711696842475.514983-CDS-E_fasciculatus_S2_contig8138:4926..5071Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8138 4927..5071 +
1696842475.5256398-CDS-E_fasciculatus_S2_contig8138:5857..59161696842475.5256398-CDS-E_fasciculatus_S2_contig8138:5857..5916Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8138 5858..5916 +
1696842475.536693-CDS-E_fasciculatus_S2_contig8138:6313..64211696842475.536693-CDS-E_fasciculatus_S2_contig8138:6313..6421Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8138 6314..6421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8138.16290.1

>prot_E_fasciculatus_S2_contig8138.16290.1 ID=prot_E_fasciculatus_S2_contig8138.16290.1|Name=mRNA_E_fasciculatus_S2_contig8138.16290.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp
MVNFLEVAKNVQMEEPDDDVNSDYDDLVAEYEERETQRLEDLVQTFQDRM
IDSQSVRVEPRNDAEVEARRQKLLQACNGFREHDDHLKKFLNPSPNPQVQ
NVDQTIDTVNFVHDQNFENSVVGASIELSSKLQTSALTQTQYHGGHGLVT
SMGNI*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8138:902..6801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8138.16290.1 ID=mRNA_E_fasciculatus_S2_contig8138.16290.1|Name=mRNA_E_fasciculatus_S2_contig8138.16290.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5900bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8138:902..6801+ (Ectocarpus fasciculatus EfasUO2)
AAGGTGTCGTTTCGAGGGTCGAACTGGGTGATCGAGAAGCGGTTCAATGA CTTCGTCACGCTTCATCAAGGGCTTTCGCGGGAGTTCAGAGACACGGACT TGGGGCCACTGCCTAAAAGGAGATTCTTCAACAGGTGGGAGATTATTGTT TGGTGGTTTCGAGGGCGTCAACTGCCCGCAAACGTTCTTGTTTTTTTATC TCTGTGGTCGAGCGCTGTACCCTCATCAAGCTGGTAGCAGCAGGTTGTGG CCTTGAACCTCTACTGGGAGTGAATAGTTTGCAGGGTTGTGGTCGGAAAA CGATGTGTTGGCGAGCATGCACAAATCATGAGGGAAGGGACTGCTTAAGC CCCTGTCGCGTTTAAATATCGAAGGCAAGAACCGCAGGGGCAATGTGAAC AACTAAGAAGAGGCCCTGTGTTAACCTTCCTCCTCTTTTGTGACTTGGCT TAAACGTCAAAATGCGTGCCGGAAGGTGTAGAGTGGCGCCGGAATGGCTG AGACGAAAATAACGCACACACACCAGTACGGTTCTGGTGCAAGGCATACT GGTTTGTCCAACGAAGTAGCTGTTGGTGCTTGAGTTCATCATCGCTTAGG CCTCCAACGACAGACCATGCAGGACAGATAGGGACGCAGCTGGTGTTGGC TGCTGGCTTCGAGCACACCACCGAATGAATTGCTCGATTGTCCGGGGCTC GCCTGTGTGTGTGGCAATCCATCCGTGCGTGCGAATGCCGTGGCCTCTCC GGACGGGGGCACAGGGAGGCCGGTCGGCTCTCCGACAGCAGTACAGCCTT CGCAGGGTTTTTTGTTTTCGTAAACATGTTGGATATAGTATGCAATTGGT ATAATCGGGTTAGAGTTTTAGGGGTAAGGTCTGCGTGTACCACATCCCTG TTACACCTTTCCTTATAAACTTAATTTCTCGCGAAGGCGGTCTGGTCTCT CTCCGAGGCAGCCGATGATGCGGAGGGATTCGAGACAGGGCCGTTTTGTA GAAACTACAGTTGGCCACCCCGTTGCAAGGGACCGCCGAAACCGCGAGGG CTCTTATCTATGAAACAGAGAGCGGGGTTTCGTATTCCTAACTCCCAACT CCACGGCCAAGCTTACTTTCCTCTCGGAGGCTAATCGGCGTTTATGCAAC CATTGGCGTAACCAGACCATTTACGCGGATGTTCTGTTTTGGGGGGGCGC GTCAAAGCTGATTGTTCCGTCAAAACTATTTTTTTTTGTCGTCTCTGTCG TCGCGGCAGATTCGATCCAGATTTCTTGAACGAGCGAAGCCAGGACTTGC AGGCGTTTCTGGGGAGAGCGCTAGTGAAGATCCAGGTCACCAACAGCGAC TCTATGGTTAACTTCCTAGAGGTGTGTCGTTCGTTCACCCGCCACACTCT GCACCACCGTGCAAAGACACCGCCTGTTGTTATCGCCCCCCCCACCCATG ACGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGTGCGCCCCTT CCTGGCTTTGTAGGGATGCCTGGTCAATGGTCCAAGACTACGCCATGCAC GGCGATGAGTACACCCCCATTGACGAGAAATCTGACCTCGTTTTGCCGTG AATGGGATATGGAGGCGTTCCTTGGCCGCGCGAGAGACATGGTCTTTGTC GAGAATGTAGTTAGTGTTGTTTGACGAATTATTTCACCCGAGCCATCGGG GAGATAGTTACATATATATCATATCACAAGTAGCCTCATTGGCAGGTGAT GCTCCGATCGCGCATGATGCGGTTGCACTACCTGGCATGCGCTGGAAGCG ATGCCGCTTGGTGCATTCGCGTCACAAGCAATGACCTTGTGTGCGTAAAA AGTAGCAGTAGTACATGTGTTGCCGTACGTTTCCCGTTAGGCATCCCTGA TTGCGGCGTGATCCCCCACCTTTTTCTTGCACTGCATTACTACTGCCGTT TGGCAAAGTGCAAGAGTTTTTGGTATATGTTCCACAGCAGGATACATGCT ACCACAACCGTTCGAGAACTCGAAGGGGTGTCTTGAAGGTTTTACAGAGT GGGTGTTGAGACAAACCTACTGCATACTTTGCCACACTCTCGTTTTTTTA GCCTACCGTAGTGTACTTCTGCTGTAGTATACTATTTCGAGCAACAGCAG CCTCCATAAACGGCTTGGGACATGCTGATCGTCTGTTCCCTTTTTTGTAC ACGCAGGTCGCGAAGAACGTTCAGATGGAAGAGCCAGATGATGACGTAAA CAGCGACTACGATGATCTCGTGGCAGAGTGAGTAACGAAATCCCTCGACA TGTAAATATAGCGCCGCGATTGAGCGTTTTATTGTGCCTGTAGTTGGAAA TTTCTTGTGAAGTTGAAGTAGATTGTGTACATCTACGACGTACGAGCGCG TTTTATTCGTTTTTTATTTTTTCGTCACTTTAAATCAGCGCTCACGGGAA TTTTTTTGGAATTTTTGGGGTTTGGAGGAAAGACGTGTTTTGATAATCGG GCGGGTCTCGAGATGTCGTCTTGTTGTCTTGCCAGCAACCGGAACAACTT GCTGACCGCTTAACGCATCCCATCCGTAGTTGTGTGTTGCCTTAGAAGTC GAGCGGCTGCTCAAGGGCATGCAACTTTTTTCGTAGAAGCAAGATATGCC GTGAGAATTGCCGGTTCGTGTGTTCATCCCCCGTACGCTTGGTAGAAGCA TGTTCGCGTCCTCCTGTCACAAGTGGGGCAGTATTATTTTTGTCTACTAT TATTTAGTTGACTGCCCGCATCCAGGCAACTCTCATCCGGAGAGTTGGTT GTGATGTCGTTGATCCGGCGGTGTCAGTTCGCAGCAATGGTTGTCTTACC CTGCATTGGTTGTCTAACCCAGCATTGGTTGTCTCATCCAGCAATGGTTG TCTTATCCAGCGCTGGTTGCGTCCATCCAACATTGACCTGCATCGTTTCT GGAGAACCGTATCTCTTTTCTGCAACATCGGTATTTAGGGCACGCAGCCG CTACAGTACCAATCGAGGAATGATGGGATGTTGCTCCGTCCCCTTTTTGT GGCCGATTTGCCCCCCCCCTCCCTTCCAGCCTCTCTGCTTGTTCATCCCA TGTACGTACTGCTGTACTTGTTCCCCCTCGCGTGCCCCCCTGAGCGACAA CTCCTCTCCATTGGCAGTACCTCTCTGTGCACACGCGTGTAGCACGGGCA AGGGGATGGCATGCATAAATACATAAGAAGCACATTCTTATGACGCGGTT GCCAACCCTGGCACCCTAACGGTGTGTGCTGCCCTCTCTCTTTTTCTTTT TTTTGCGTTTTTCTTCGCATTTTCAGGTACGAAGAGCGCGAAACACAACG TCTGGAGGACTTGGTGCAGACCTTCCAGGACCGCATGATAGATGTGAGTG ACGTTTGGCTTGAAGGAAGGACATGAGCCGAAAGTGCACACTCTCACCGC ACTAACCCTAACCCTAACCCTAACCCTCGCAACCATTGGTATTATCCCGA ACCCCCCGGTTCTACCCCGACCCAAACTAGCTGTCCTTTCAAAATCCCAA TTCTTCCATATGACACAAACTTGATGTACGGAGTCCTGCGCAACCCTTCT CTCACTGCTGTCGTGTTGGGTTCTCTTGTTAACCTTATTACCCTTGTTCT GGAGAAGCGGAGGTGTCTGCCAGGGAAAACAAGTACCATCGGTTTTTGAT GCAAAGATAACCACGACCATGCCTTGCTTGGCCCTGAACCCAATCCGGAA CTCGTTTGTCAGCCGCTTGGCGCCCTGATCTAACTCCGGAGCCCCAACCC TCCGCCCTCGGTCGGTTGGTCCGCGATTGGTTCGCTCTGAACCATCCCCG GAGCCCAATCCCTCGGCCCTCGGCGAACCTATTTGGTTGTGACCAGAGCC AGAGCGTGTCAATGGAGCTCAAACCCTCCGCTCTCAGTCGGTTCTCTTTT GGTTCGCCTTGCGGTTCGCTCTGAACTAACCCCGGAGTCCGATCCCTCCG TCCGCGCGTGTTTGGTTGTGACCAGAGCCAGAGCGTGAGAGTGGAGCCGC GAAACGATGCGGAGGTGGAGGCGCGAAGGCAGAAGCTGCTCCAGGCCTGC AACGGGTTTAGAGAGCACGACGACCACCTCAAGAAGTTCTTAAACCCCAG CCCGAATCCGCAAGTCCAGAGTGAGTTTGTTTTTTGAGGTGATGTCTAAC TTGAAAGGAAATAGACTGTTTTACCCGTTCGAGATATTACCGCAAAAGTC GAGTGTTATTGTTCCCGTGGACTGCCGTGCCGGCGGCAGCTCTGGCCCGG CCCCGAAGTTATGGCCGTTTCGTCTTTTTGTGGGGAAACTCCCTTGAAAC GTCTTTTTCCTGTGCTGCCAGCGCCTGAGACCTGGAAACGCCGACATAAC TCTGTGCCGACCGGCCGACGGGTTTAAGTCTACCACGTGTTACGTCTGGA TGGCCGTATGACGACCGTGATCCCCTAGAGCGTTTTGATCGGTTGTGGTC TTAAGCGTGCTTCTACTGAGAGGGAGAGGTCTGTGTTGTTTTGCCGTCCG TCCGCCTCCTTTTACCGGAGCCTGAGCACGGGACCGGCGACATTGTTGGT GTGCATATGATTGAATCTTGAAAACGGGTGCTGTGCCGTCAGTTTTGGGG ATGTATGTTGTGTTTTGTGTCGGCGATTGATCGAGACCCTTGTGATGGAT AGGGTAAACATCATAGTGTCGAAGAGCGCCGTGTCTCTATGCGCGGCCAT CTTTCCGGCCTTGCAGCACACTCATTACTGTCCTTTTCAGTCAGAGGCTT GCCCAGGAAGAAGGTATATCTCAGCAGCTGTCCGGTGCTGTTGACAAGAC GGTTTGATTTTGTCCCTCAGCCTTGGGATTCCCGCAGCTTCGGTACCTTG CCTAACCGACATGGCCACCCCTCGTCGGATTATTGAACGTTTACGTCTAC GTGCAGACGTCGATCAGACGATCGACACGGTCAACTTTGTCCACGACCAA AACTTCGAGAACAGCGTGAGTTTTTTCGGCTTTTGCTGCAGCAAGCTGAG CCGCCGCAACGGGTTACTGTAGCTTGCAGTAGACCTTGTACTGGCCGTCC ATCCGCTTACTACCGCCACGAGCTTGGCGGTACTGGTAGCTTCGTTCTTG AAGCCTAACTGAATGGTCCGTGCGTGCGTCTTAGACTGCTGTACTGCGAT AAGGTACAAAATGTCCTGTACTTTGCTTTCTTGGGTTAACTGGCTTGTTG TCGGTGAGGAGCACGTGCTTACGAGGACACGAGCAGGGAGCATGGACGTA TTTCTATCTTTTTTCCCTCTCTAGTAGCGCTACTCACAAGTATTTTGAGC GCCCTTTTTTGTCGTTCCATCCGCTGTCTTTTTTCTTCTCCTTCCCACTC GTCTGCGAACAGGTGGTTGGCGCGTCGATAGAGTTGTCAAGCAAACTCCA GACGTCAGCCCTAACGCAGACGCAATATCACGGCGGACACGGCTTGGTCA CTTCCATGGGCAACATATAGAAGCGCCCCCCGCGGACCACGCCTGCTGGC GAGTCAGGTTCCAGCAGGGAAGCACAACGGGTGACGGGGTGGGGGCTGCA GGGAACGGCGTGGCACAAGGATGGGGGCAGTGTGTGGCAACTCTCCGGAG GGTAGCCGACTACCATGGTATGGCCTTGCATTCCGTGGACATCCTCGGCG CGTTCCATGGAAGGTTTTGACGCTCGGGACTGTGTGGGGCAACTCTCTGG AGGGTTTCGCTGGCTACCAGGGTATGGTCTTGCATCCCGTGGACATCCTC GGCGCGTTCCGTGGAAGGCTTTGTCGCTCAGCGGGTAGAAAATGGGTGTT TTGACTGCGTGTGTGGTGTGTCGTTTGGACGAAGCGGTAAGGGTGCATAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8138:902..6801+

>mRNA_E_fasciculatus_S2_contig8138.16290.1 ID=mRNA_E_fasciculatus_S2_contig8138.16290.1|Name=mRNA_E_fasciculatus_S2_contig8138.16290.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8138:902..6801+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTAACTTCCTAGAGGTCGCGAAGAACGTTCAGATGGAAGAGCCAGA
TGATGACGTAAACAGCGACTACGATGATCTCGTGGCAGAGTACGAAGAGC
GCGAAACACAACGTCTGGAGGACTTGGTGCAGACCTTCCAGGACCGCATG
ATAGATAGCCAGAGCGTGAGAGTGGAGCCGCGAAACGATGCGGAGGTGGA
GGCGCGAAGGCAGAAGCTGCTCCAGGCCTGCAACGGGTTTAGAGAGCACG
ACGACCACCTCAAGAAGTTCTTAAACCCCAGCCCGAATCCGCAAGTCCAG
AACGTCGATCAGACGATCGACACGGTCAACTTTGTCCACGACCAAAACTT
CGAGAACAGCGTGGTTGGCGCGTCGATAGAGTTGTCAAGCAAACTCCAGA
CGTCAGCCCTAACGCAGACGCAATATCACGGCGGACACGGCTTGGTCACT
TCCATGGGCAACATATAG
back to top