mRNA_E_fasciculatus_S2_contig8056.16217.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8056.16217.1
Unique NamemRNA_E_fasciculatus_S2_contig8056.16217.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH30_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 2.930e-39
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 1
Query:   13 GGASGYDAADDAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQAG 264
            G  SG DAADD  +PLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQAG
Sbjct:  243 GEVSGQDAADD--VPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQAG 324          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.830e-32
Identity = 71/85 (83.53%), Postives = 74/85 (87.06%), Query Frame = 1
Query:   10 GGGASGYDAADDAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQAG 264
            GG  SG DAADD  +PLPPWVTSSEVMSPLLAAYDARIQDLE Q AAQRDG+EELAGRT QLVEENDT +  HTRELDELVQQAG
Sbjct:  116 GGEVSGPDAADD--VPLPPWVTSSEVMSPLLAAYDARIQDLERQNAAQRDGIEELAGRTRQLVEENDTAK--HTRELDELVQQAG 196          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.880e-13
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   43 DAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELV---QQAG 264
            DA   +P WV S+EVMSPLLAAYD RIQDLEG V +QR  +  L  RT  LV EN+ LR+   ++LD LV   QQ G
Sbjct:  110 DAQPDVPGWVASAEVMSPLLAAYDGRIQDLEGLVESQRGELAALTERTEALVAENERLREGQVQDLDALVRVVQQTG 186          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067DA37_SAPPC)

HSP 1 Score: 62.8 bits (151), Expect = 1.610e-9
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   37 ADD---APLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQA 261
            ADD   APLP PPW TS E MSPL AAY++RI++LE  V   +  ++   G    L  EN+ L+ E +  +D+LV Q+
Sbjct:  102 ADDDGSAPLPSPPWFTSKEYMSPLFAAYESRIKELEATVDKHKRDLDAFVGHADALARENERLQHELSVTMDKLVLQS 179          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAU4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.000e-9
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   52 LPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQA 261
            L  PPW TS E MSPL AAY++RI++LEG     R  ++  A + H +  +ND L+QE T  L++L+ Q+
Sbjct:  101 LVSPPWFTSKEYMSPLFAAYESRIKELEGVCEKYRTDIDSFASQVHTMAADNDRLQQELTSALEKLILQS 170          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLB8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.730e-7
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1
Query:   31 DAADDAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQA 261
            D  +D+  P PPW TS E MSPL AAY+ RI++LE      R  ++        L  END L QE T  L++L+  A
Sbjct:   94 DDGEDSMTP-PPWFTSKEYMSPLFAAYEGRIKELESTCDKHRKDLDAFVAHATSLTSENDRLNQELTTALEKLIMHA 169          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FKT6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.740e-7
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1
Query:   31 DAADDAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQA 261
            D  +D+  P PPW TS E MSPL AAY+ RI++LE      R  ++        L  END L QE T  L++L+  A
Sbjct:   94 DDGEDSMTP-PPWFTSKEYMSPLFAAYEGRIKELESTCDKHRKDLDAFVAHATSLTSENDRLNQELTTALEKLIMHA 169          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Aste57867_12932 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYX0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.380e-7
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   31 DAADDAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELV 252
            D   D  L  PPW +S E MSPL AAY++RI++LE      R  M+    +   L  END L++E T  L++L+
Sbjct:   99 DDDGDGSLASPPWFSSKEYMSPLFAAYESRIKELETTCEKTRKDMDSFVAQASHLATENDRLQEELTTALEKLI 172          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9C6_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 8.300e-7
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   31 DAADDAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQA 261
            D  +D+ +  PPW TS E MSPL AAY+ RI++L+      R  ++        L  +ND L+QE T  L++L+ Q+
Sbjct:   93 DEGEDSSMVPPPWFTSKEYMSPLFAAYEGRIKELDIMCEKHRKDLDAFVVHAQSLALDNDRLQQELTSALEKLILQS 169          
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Match: Uncharacterized (protein (Fragment) n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B9M0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.010e-6
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1
Query:   31 DAADDAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQA 261
            D  +D+  P PPW TS E MSPL AAY+ RI++LE      R  ++        L  +ND L QE T  L++L+  A
Sbjct:   94 DDGEDSMTP-PPWFTSKEYMSPLFAAYEGRIKELESTCDKHRKDLDAFVVHATSLTSDNDRLNQELTTALEKLIMHA 169          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8056.16217.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
Uncharacterized2.930e-3992.86protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.830e-3283.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.880e-1355.84protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.610e-944.87protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Uncharacterized3.000e-944.29protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized1.730e-741.56protein n=3 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized1.740e-741.56protein n=2 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Aste57867_129322.380e-740.54protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized8.300e-737.66protein n=3 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized1.010e-640.26protein (Fragment) n=6 Tax=Aphanomyces astaci TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8056contigE_fasciculatus_S2_contig8056:5030..6033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score147.9
Seed ortholog evalue2.2e-33
Seed eggNOG ortholog2880.D8LH30
Model size266
KEGG koko:K10352
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs28NW5@1,2QVG8@2759
Cds size264
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842466.802501-CDS-E_fasciculatus_S2_contig8056:5031..50821696842466.802501-CDS-E_fasciculatus_S2_contig8056:5031..5082Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8056 5032..5082 -
1696842466.8232145-CDS-E_fasciculatus_S2_contig8056:5436..55231696842466.8232145-CDS-E_fasciculatus_S2_contig8056:5436..5523Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8056 5437..5523 -
1696842466.8390055-CDS-E_fasciculatus_S2_contig8056:5907..60331696842466.8390055-CDS-E_fasciculatus_S2_contig8056:5907..6033Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8056 5908..6033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8056.16217.1prot_E_fasciculatus_S2_contig8056.16217.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8056 5032..6033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8056.16217.1

>prot_E_fasciculatus_S2_contig8056.16217.1 ID=prot_E_fasciculatus_S2_contig8056.16217.1|Name=mRNA_E_fasciculatus_S2_contig8056.16217.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=88bp
GEGGGGASGYDAADDAPLPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAA
QRDGMEELAGRTHQLVEENDTLRQEHTRELDELVQQAG
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mRNA from alignment at E_fasciculatus_S2_contig8056:5030..6033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8056.16217.1 ID=mRNA_E_fasciculatus_S2_contig8056.16217.1|Name=mRNA_E_fasciculatus_S2_contig8056.16217.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1004bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8056:5030..6033- (Ectocarpus fasciculatus EfasUO2)
GGAGAGGGTGGCGGAGGGGCTAGCGGGTACGATGCCGCGGACGATGCTCC TCTTCCTCTTCCCCCGTGGGTGACGTCATCGGAGGTCATGTCTCCGCTTC TCGCGGCCTACGACGCTAGGATACAGGTCTGCTGGCATCACTGCTTGGTT TTGATTGGCTGATGGTGTGTCCCGTCATTGATGCCGTTCCTGCAGCGGTG ATCGAGGTGATTTGGCACTAGGTGGTACTCTACCATGGCGTGTGTCGTGT CTATCGTGACTCGAAGCATTTGGTAGACAGCGCTGTCCAACGGATAGAAG CCCTCCGCAGCTGACAGTAGGCACTCCCGAAAGCACTACACACACAAGCA CAATGCCCCAACGAGATTGCTCGCTGGGTTCATTGTTTCAATTTTTTCAC CCTTTGGCTACGGATCACTTGCATGCTAGGTACGGTACCTAGCATGCAAG TGATCCGTGGCCGAAGGCTGAAAGTGCTTGACTAGCAATGCTTTGTCCGA CACGACACAGGACCTGGAGGGGCAAGTTGCGGCACAGAGGGATGGCATGG AGGAGCTCGCTGGTCGGACGCATCAACTCGTGGAGGAGAACGACACGGCA AGTGAAGACATACTGTAAATGTTCGATACGAAGCGGAGAGGCTGTAAGAA ACGAGCATGTCGCTTGTCTCGAGGGGAGTGGTCTCTATTGATATCACTAT GTAGAAACCACGCGTGCTGCTATTTCTTGAGTTGTTGGAGCCTTCGACGT GTTGTTTTTTGCCTCATGGGGAGTGCGGCTGGGACGGACGGCGGTGTGGC GGTTGTTATCACATCACAGCCATTTACTAGTAGAATACGTCCCATGGGAA TGCCATCATTTGGCGGTGCTACGGTGTTTTGCGGGTAGGTCTCGACTGAA CAAGTAAACAATACTATTGTCTCTCTCGGGCCGTTGATTGGTGTCTTGCA GCTGCGGCAAGAGCATACTCGCGAGCTGGACGAACTGGTGCAGCAGGCCG GGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8056:5030..6033-

>mRNA_E_fasciculatus_S2_contig8056.16217.1 ID=mRNA_E_fasciculatus_S2_contig8056.16217.1|Name=mRNA_E_fasciculatus_S2_contig8056.16217.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=264bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8056:5030..6033- (Ectocarpus fasciculatus EfasUO2)
GGAGAGGGTGGCGGAGGGGCTAGCGGGTACGATGCCGCGGACGATGCTCC
TCTTCCTCTTCCCCCGTGGGTGACGTCATCGGAGGTCATGTCTCCGCTTC
TCGCGGCCTACGACGCTAGGATACAGGACCTGGAGGGGCAAGTTGCGGCA
CAGAGGGATGGCATGGAGGAGCTCGCTGGTCGGACGCATCAACTCGTGGA
GGAGAACGACACGCTGCGGCAAGAGCATACTCGCGAGCTGGACGAACTGG
TGCAGCAGGCCGGG
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