mRNA_E_fasciculatus_S2_contig761.15777.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig761.15777.1
Unique NamemRNA_E_fasciculatus_S2_contig761.15777.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: Helicase (C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE4_ECTSI)

HSP 1 Score: 893 bits (2307), Expect = 0.000e+0
Identity = 489/560 (87.32%), Postives = 502/560 (89.64%), Query Frame = 1
Query:  433 MYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGSLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSTGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKRSPRGIAFCADVRHAHDLARVLNEHNISAMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMLGRGTRPWLPPTPQ---ANQPDMGADSTASRRRSDIAGSPKPRMHVIDLVDNCGKHKASTCNSYTRAQRLMSTALGLSSGFCGDDASTDGMGGAFSVEHVGSLAAEAMSLVDADGAAEVGDACSHPLLEAKTPRELALLVKHYRLLQGAKTAETMLTVAGKGIGDGIPPPGWDLSQLSVGDRIGKDSFLRVVVEAILLGYEEGQDDDESEGFDDXXXXXXXXXXXXXXXXXXXGYESSFRKPHQRAKRRHFPRAHIRNRPSLRRRKKKNFAAGTATVHMRHASSGTIFSWRTSGVKDTSGAELHEGASYRLVATIAEALAAGGAEGAGEIGVTRCRLTLVTADASSGRR 2103
            MYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIG LDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFS GALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKK+SPRGIAFCADVRHAHDLARVLNEHNISAMA+DGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAP+CDTIVMCRPTQSAPLYMQM+GRGTRPWL PTPQ   AN  D GADSTASRRRSDIA SPKPRMHVIDLVDNCGKHK  +          MS ALGLSSGF GDDA TDGMGGAFSVEHVGSLAAEAMSLVDADGAAEV +ACSHPLLEAKTPRELALLVKHYRLLQGAKTAET LTV G+G  DG   PGWDLSQL VGDRIGKDSFLRV+VEAILLGYEEGQDDDESE F  XXXXXXXXXXXXXXXX   G E SF KPH + KRR FPRA IR RP    RKKK FAAG+ATV MRH SSGTIFSWRTSGVKDTSGAELHEGASYRLVAT+ EALAAGGAE AGE+G+TRCRLTLVTADAS GRR
Sbjct:    1 MYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGGLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSAGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKKSPRGIAFCADVRHAHDLARVLNEHNISAMAVDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPYCDTIVMCRPTQSAPLYMQMIGRGTRPWLSPTPQVRPANNADAGADSTASRRRSDIAASPKPRMHVIDLVDNCGKHKVMS----------MSAALGLSSGFRGDDAGTDGMGGAFSVEHVGSLAAEAMSLVDADGAAEVENACSHPLLEAKTPRELALLVKHYRLLQGAKTAETTLTVTGRGANDGTSSPGWDLSQLCVGDRIGKDSFLRVIVEAILLGYEEGQDDDESEDFXXXXXXXXXXXXXXXXXXDEDGCERSFSKPHPKTKRRRFPRAPIRTRPW---RKKKPFAAGSATVRMRHPSSGTIFSWRTSGVKDTSGAELHEGASYRLVATVTEALAAGGAEEAGEVGLTRCRLTLVTADASGGRR 547          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G6_9PHAE)

HSP 1 Score: 694 bits (1790), Expect = 9.140e-241
Identity = 354/385 (91.95%), Postives = 363/385 (94.29%), Query Frame = 1
Query:   10 ATGSISVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQQAFPELSRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGSGAARLRKFANYGGVVVVDEAHHVKAGGMYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGSLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSTGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKRSPRGIAFCADVRHAHDLARVLNEHNISAMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMLGRGTRPWLPPTPQANQPDMGADSTASRRRSDI 1164
            A GS SVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQ AFPEL RRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKG ETAHAGLDVVVASVQTLGRRGSGAARLRKFANYGGVVVVDEAHHVKAGGMYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIG LDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFS GALSTAVNNDVRNEAAARAMLEFGAGEP SS KK+SPRGIAFC DVRHAHDLARVLNEHNISAMA+DGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAP CDTIVMCRPTQSAPLYMQM+GRGTRPWLPPTPQ  +     D ++   +++I
Sbjct:   10 AAGSTSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQ-AFPELCRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGNETAHAGLDVVVASVQTLGRRGSGAARLRKFANYGGVVVVDEAHHVKAGGMYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGGLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSAGALSTAVNNDVRNEAAARAMLEFGAGEPLSSRKKKSPRGIAFCVDVRHAHDLARVLNEHNISAMAVDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPSCDTIVMCRPTQSAPLYMQMIGRGTRPWLPPTPQGAETPRITDISSYSAQNNI 393          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W6_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 4.460e-106
Identity = 201/242 (83.06%), Postives = 208/242 (85.95%), Query Frame = 1
Query: 1378 MSLVDADGAAEVGDACSHPLLEAKTPRELALLVKHYRLLQGAKTAETMLTVAGKGIGDGIPPPGWDLSQLSVGDRIGKDSFLRVVVEAILLGYEEGQDDDESEGFDDXXXXXXXXXXXXXXXXXXXGYESSFRKPHQRAKRRHFPRAHIRNRPSLRRRKKKNFAAGTATVHMRHASSGTIFSWRTSGVKDTSGAELHEGASYRLVATIAEALAAGGAEGAGEIGVTRCRLTLVTADASSGRR 2103
            MSLVDADGAAEV +AC HPLLEAKTPRELALLVKHYRLLQGAK AET LTV G+G  DGI PPGWDLSQL VGDRIGKDSFLRVVVEAILLGYEEGQDDDESE    XXXXXXXXXXXXXX     GYE SF KPHQR KRR FPRAHIR+RPS R  KKK FAAG+ATV MRH SSGTIFSW+TSGVKDTSGAELHEGASYRLVAT+AEALA GG +G GEIGVTRCRLTLVTA AS  RR
Sbjct:    1 MSLVDADGAAEVENACLHPLLEAKTPRELALLVKHYRLLQGAKAAETTLTVTGRGANDGISPPGWDLSQLYVGDRIGKDSFLRVVVEAILLGYEEGQDDDESEDLXXXXXXXXXXXXXXXXYDDGDGYERSFSKPHQRTKRRRFPRAHIRSRPSPRWSKKKPFAAGSATVRMRHPSSGTIFSWKTSGVKDTSGAELHEGASYRLVATVAEALAVGGTKGPGEIGVTRCRLTLVTAAASGNRR 242          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHM4_9STRA)

HSP 1 Score: 325 bits (832), Expect = 1.130e-94
Identity = 213/495 (43.03%), Postives = 269/495 (54.34%), Query Frame = 1
Query:   28 VLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQQAFPELSRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLG-RRGSGA-ARLRKFANYG-GVVVVDEAHHVKAGGMYDDVLNG-----------------LGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGSLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQ-------------------------------DFSTGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKRSPRG----------------------------IAFCADVRHAHDLARVLNEHNISAMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTE--------GFDAPFCDTIVMCRPTQSAPLYMQMLGRGTRPWLPPTPQANQPDMGADS--TASRRRSDIAGSPKPRMHVIDLVDNCGKHKASTCNS 1245
            +LRPYQ  V+ +   LY QGT R+LVP+ATG+GKT VF+H+P  AFPEL++RGTLVLVHR+ELV+QA A   +    L VG+E   E + A  D VVASVQTLG RRG+G  ARLR+      G+V+VDEAHH+   G+Y+ +LNG                 LG+GS C G+TRGG L+AGFTATP RADG +L PFFD     LDL WGI  G+LV+I    +  T  +A L  R Q                               DF +  LS AVN   RNEA  RA+       P S+G      G                            + FCA V HAHDLARVL++  + A A+DG    ++R   +  FR+G+++ +TN GV TE        GFDAP  +T+VM RPT S PL+MQM+GRGTRP     P        A+   +A  RRS I  S KP M ++D+VDNCGKHK  T  S
Sbjct:   19 MLRPYQKEVLQQMKALYAQGTHRILVPMATGMGKTTVFSHVPS-AFPELAKRGTLVLVHREELVRQAQAQLTRC--GLKVGIEMRGERSSASDDAVVASVQTLGYRRGAGGMARLRQLVERPPGIVIVDEAHHMTEPGLYNRILNGETNSQAVRAVLTPEAFELGMGSKCGGKTRGGALVAGFTATPDRADGKALTPFFDAVCAPLDLAWGILGGHLVNI----IVDTDTLACLRRRGQTTLRCSGPAFLFLPFPSHTDIKVRGSTVGGRDFDSAELSAAVNTSARNEAIVRALKHMPQRLPPSTGVHHLTLGGSDGXXXXXXXXSTAEQAMAQLERPTCTLCFCASVEHAHDLARVLSDAGMPAAAVDGTTPLEERRAIIERFRAGDLAVVTNFGVFTEVHITNVQQGFDAPHVNTVVMARPTMSQPLFMQMIGRGTRP----APGVLDSLYSAEGPMSAELRRSAIDKSHKPWMRLVDVVDNCGKHKVKTAGS 502          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: ResIII (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE3_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 5.690e-68
Identity = 127/158 (80.38%), Postives = 131/158 (82.91%), Query Frame = 1
Query:    1 PAGATGSISVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQ---------------------QAFPELSRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGSGAARLRKFANYGGVVVVDEA 411
            P+ A GS SVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQ                     QAFPEL RRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGSGAARL+ FA+Y GVVVVDE+
Sbjct:    4 PSAAAGSTSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQIKTRDEYANGEGRGRFRCLRQQAFPELCRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGSGAARLQNFADYAGVVVVDES 161          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: DEAD/DEAH (box helicase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1F660_9DELT)

HSP 1 Score: 220 bits (560), Expect = 6.340e-58
Identity = 150/403 (37.22%), Postives = 205/403 (50.87%), Query Frame = 1
Query:   19 SISVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQQAFPELSRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGSGAARLRKFANYG-GVVVVDEAHHVKAGGMYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGSLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSTGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKRSPRGIAFCADVRHAHDLARVLNEHNISAMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMLGRGTRPWLPPTPQANQPDMGADSTASRRRSDIAGSPKPRMHVIDLVDNCGKH 1224
            ++ +LR YQ + +    + + +G  R LV L TG GKTV F HLP   F  L  +  LVL HR+EL++QA        P   V +E+    A    D+VVASV TLGR  +G++RL +F      ++V+DEAHH  A   Y  +L    V +     +    LL G+TATPRR D + L   F   +   DL   I  GYLV + A+ V +  D++ + TR  DF    LS  VN   RN+   +A LE          K    + I F  DVRHA+DLA V   + +  + + G M K++R   L AFRSG +  +TNC +LTEGFD P  +TI+M RPT+S+ LY QM+GRGTR                               K R+ VID+VDN  +H
Sbjct:   13 AMHLLRGYQLACLKAIQQAHSRGVTRQLVSLPTGTGKTVCFAHLP--GFLGLPGK-MLVLAHREELLEQAAGKLEAVNPDRRVEIEQADRHASEEADIVVASVATLGRS-NGSSRLGRFDPQAFRLIVIDEAHHAVAP-TYRAILEYFDVFAPPSPRSP---LLVGYTATPRRGDEVGLESIFQEIVYHRDLREMIEAGYLVALRAYKVTSEVDLSPVHTRHGDFVVNELSDRVNTIDRNDLIVKAYLE----------KAYGSKTIVFTVDVRHAYDLALVFQRYGVPCLPVCGEMPKEERRDVLEAFRSGRIQVITNCNLLTEGFDDPEVETIIMARPTKSSLLYTQMIGRGTR---------------------------TAPGKERLTVIDVVDNASRH 370          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: DEAD/DEAH (box helicase n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445N132_9DELT)

HSP 1 Score: 218 bits (556), Expect = 1.350e-57
Identity = 147/355 (41.41%), Postives = 191/355 (53.80%), Query Frame = 1
Query:   31 LRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQQAFPELSRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGS----GAARLRKFANYGGVVVVDEAHHVKAGGMYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGSLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSTGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKRSPRGIAFCADVRHAHDLARVLNEHNISAMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMLGRGTR 1083
            LR YQ   +    E Y  G RR LV L TG GKTV+F   P+       ++  LVL HR EL+ QA     +  P+L+V VE+   TA    DVVVASV TLGR+GS    G    R F     ++VVDEAHH  A   +  VL  L V      ETR  +LL GFTATP+R DG+ L   F   + S  L   I  G+L  + A+ V T  D++ + TRM DF T  LS AVN + RN+   +       G+ +          + FC DV HA  LA+  N   +SA A+ G M++ +R + L  FR G+ S L NC VLTEG+D P  + I++ RPT+S  LY QM+GRGTR
Sbjct:   12 LRDYQRECLSAIFERYQAGIRRQLVCLPTGSGKTVIFAEFPRYF---KMKKQMLVLAHRAELLDQACEKIRRANPYLTVAVEQADRTADPECDVVVASVPTLGRKGSRRLTGLDPDRFF-----LIVVDEAHHATAD-TFKRVLKYLDVFMP---ETR--KLLVGFTATPKRGDGVGLDAVFQEIVYSRSLPEMIKAGHLSPVAAYRVETDIDLSRVKTRMGDFVTSQLSRAVNIEERNDLIVKVFHTHLEGKQT----------LCFCVDVAHALSLAQAFNREGVSAAAVTGHMDRAEREKELEKFRVGKTSVLANCMVLTEGYDEPSVEGIILARPTKSTLLYTQMIGRGTR 342          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Acidobacteria bacterium 13_1_40CM_56_16 TaxID=1803458 RepID=A0A1Q7G082_9BACT)

HSP 1 Score: 210 bits (534), Expect = 2.700e-56
Identity = 138/354 (38.98%), Postives = 187/354 (52.82%), Query Frame = 1
Query:   28 VLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQQAFPELSRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGSGAARLR--KFANYGGVVVVDEAHHVKAGGMYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGSLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSTGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKRSPRGIAFCADVRHAHDLARVLNEHNISAMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMLGRGTR 1083
            +LRPYQS  ++   + Y    RR++V L TG GKTVVF H P+    ++ +R  LVL HR+EL+ QA   F    P L   +E+    A A   VV+ASV TL R G+  ARL   +F+    +VVVDEAHH  A   Y  + +  G+      E    R L GFTATPRR D   L   F+    + D+   IA  YL  I  + + T   +  +  R  DF    L+  VN  +RN    +A  +F AG           R I FC DV HA D+ R  +E  I A  + G +++ +R   LA F +G++  +TNC +LTEGFD P  D ++M RPT+S  LY QM+GRGTR
Sbjct:   15 LLRPYQSEALNAVRDAYKADKRRVIVSLPTGTGKTVVFAHFPRVL--KMKKR-LLVLAHREELLLQAQDKFRSIDPELKAEIEQAGARAAADAKVVIASVPTLARNGARLARLHPDEFS----IVVVDEAHHAVAP-SYRRIFDHFGLF-----EPGVSRYLIGFTATPRRGDKQGLGEVFEEVCYARDMREMIACRYLCPITGWRIDTDLSLDNVKVRHGDFVESQLARVVNTPLRNTLLVKAYRDFAAGR----------RAIIFCVDVAHAQDVHRAFDEAGIRAAPVWGELSRDERRNVLAEFSAGKIDVVTNCNLLTEGFDEPRVDCVIMARPTRSKLLYAQMIGRGTR 345          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: DNA (helicase, phage associated Type III restriction enzme n=1 Tax=Olavius sp. associated proteobacterium Delta 1 TaxID=698986 RepID=A0A6J4XIT3_9DELT)

HSP 1 Score: 214 bits (545), Expect = 4.140e-56
Identity = 145/352 (41.19%), Postives = 181/352 (51.42%), Query Frame = 1
Query:   31 LRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQQAFPELSRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGSGAARLRKF-ANYGGVVVVDEAHHVKAGGMYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGSLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSTGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKRSPRGIAFCADVRHAHDLARVLNEHNISAMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMLGRGTR 1083
            LR YQ   ++  +  Y  G RR L  L TG GKTV+F   P+       R   LVL HR EL++QA        P L + VE+    A    DVVVASV TLGRRGS   RL++   N   ++VVDEAHH  A   Y  VL   GV  A   +T   +LL GFTATP+R DG  L   F   + S  L   I   YL  + A+ V T  D++ + TRM DF T  LS AVN   RN+                  K    R + FC DV H   LA   N  +I A A+ G M++  R +AL  F +G +  L NC VLTEG+D P    I++ RPT+SA LY QM+GRGTR
Sbjct:   13 LRDYQRECLEAIMTRYRAGVRRQLTCLPTGSGKTVIFAEFPRYF---RMRNQMLVLAHRSELLEQACDKIRCTNPDLKIAVEQAGRIADPACDVVVASVPTLGRRGS--KRLQRLDPNRFFLIVVDEAHHATAA-TYKRVLEYFGVFEA---DTA--KLLVGFTATPKRGDGQGLDAVFQEIVFSRSLPEMIHAKYLAPVAAYRVETDIDLSRVKTRMGDFVTSHLSRAVNIAPRNDLVVNVFRS----------KLEDRRTLCFCVDVAHTRSLAEAFNRMDIPAAAVSGDMDRAARAKALEDFHTGRIRVLANCMVLTEGYDEPSVSGIILARPTKSALLYTQMVGRGTR 343          
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8ZVD1_9BACT)

HSP 1 Score: 213 bits (543), Expect = 1.520e-55
Identity = 142/353 (40.23%), Postives = 187/353 (52.97%), Query Frame = 1
Query:   31 LRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQQAFPELSRRGTLVLVHRDELVQQAVASFGKFLPHLSVGVEKGPETAHAGLDVVVASVQTLGRRGSGAARLR--KFANYGGVVVVDEAHHVKAGGMYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGSLDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSTGALSTAVNNDVRNEAAARAMLEFGAGEPSSSGKKRSPRGIAFCADVRHAHDLARVLNEHNISAMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMLGRGTR 1083
            LR YQS  ++   + Y  G RR++V L TG GKTVVF H P+    ++ +R  LVL HR+EL+ QA   F    P L V +E+    A     VV+ASV TL R G+  +RL+  +F+    +VVVDEAHH  A   Y  + +  G+      E    R L GFTATPRR D   L   F     + D+   IA+ YL  I  + V +   +  +  R  DF    L+ AVN  +RN    +A  +F  G           R I FC DV HA D+ RV  E  I A  + G +++  R   LAAF +GE+  +TNC VLTEGFD P  D ++M RPT+S  LY QMLGRGTR
Sbjct:   12 LRAYQSEALNAVCDAYRSGKRRVIVSLPTGTGKTVVFAHFPRVL--KMKKR-LLVLAHREELLLQARDKFRSIDPELKVEIEQAGSRAADDAKVVIASVPTLARSGARLSRLQPDEFS----IVVVDEAHHAVAP-SYRRIFDHFGLF-----EPNVSRYLIGFTATPRRGDKQGLGEVFQEVCYARDMREMIADRYLCPITGWRVASDLSLDHVKVRHGDFIESQLAHAVNIPLRNSLLVKAYRDFAPGR----------RAIVFCVDVAHAKDVHRVFAEAGIRAATVWGALSRDQRRSTLAAFSAGEIDVVTNCNVLTEGFDEPRVDCVIMARPTKSKLLYAQMLGRGTR 341          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig761.15777.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Helicase0.000e+087.32C-terminal domain-containing protein n=1 Tax=Ectoc... [more]
Uncharacterized9.140e-24191.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.460e-10683.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
P-loop1.130e-9443.03containing nucleoside triphosphate hydrolase prote... [more]
ResIII5.690e-6880.38domain-containing protein n=1 Tax=Ectocarpus silic... [more]
DEAD/DEAH6.340e-5837.22box helicase n=2 Tax=Deltaproteobacteria bacterium... [more]
DEAD/DEAH1.350e-5741.41box helicase n=1 Tax=uncultured Desulfobacterium s... [more]
Uncharacterized2.700e-5638.98protein (Fragment) n=1 Tax=Acidobacteria bacterium... [more]
DNA4.140e-5641.19helicase, phage associated Type III restriction en... [more]
Uncharacterized1.520e-5540.23protein n=1 Tax=Acidobacteria bacterium TaxID=1978... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig761contigE_fasciculatus_S2_contig761:12521..24901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score899.4
Seed ortholog evalue8.3e-259
Seed eggNOG ortholog2880.D8LIE4
Preferred nameirc3
Model size3090
KEGG koko:K17677
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0032042,GO:0033676,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
Exons15
EggNOG free text desc.DEAD DEAH box helicase
EggNOG OGs2QT4U@2759,COG1061@1
Cds size1674
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig761.15777.1prot_E_fasciculatus_S2_contig761.15777.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig761 15060..23917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.250984-UTR-E_fasciculatus_S2_contig761:12520..126761696842423.250984-UTR-E_fasciculatus_S2_contig761:12520..12676Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig761 12521..12676 +
1696842423.262964-UTR-E_fasciculatus_S2_contig761:13147..132161696842423.262964-UTR-E_fasciculatus_S2_contig761:13147..13216Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig761 13148..13216 +
1696842423.2726429-UTR-E_fasciculatus_S2_contig761:13422..135091696842423.2726429-UTR-E_fasciculatus_S2_contig761:13422..13509Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig761 13423..13509 +
1696842423.2852929-UTR-E_fasciculatus_S2_contig761:14180..142761696842423.2852929-UTR-E_fasciculatus_S2_contig761:14180..14276Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig761 14181..14276 +
1696842423.301593-UTR-E_fasciculatus_S2_contig761:15035..150591696842423.301593-UTR-E_fasciculatus_S2_contig761:15035..15059Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig761 15036..15059 +
1696842423.4201336-UTR-E_fasciculatus_S2_contig761:23917..249011696842423.4201336-UTR-E_fasciculatus_S2_contig761:23917..24901Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig761 23918..24901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.3129115-CDS-E_fasciculatus_S2_contig761:15059..151601696842423.3129115-CDS-E_fasciculatus_S2_contig761:15059..15160Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 15060..15160 +
1696842423.3262246-CDS-E_fasciculatus_S2_contig761:15546..156971696842423.3262246-CDS-E_fasciculatus_S2_contig761:15546..15697Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 15547..15697 +
1696842423.3362842-CDS-E_fasciculatus_S2_contig761:16379..165041696842423.3362842-CDS-E_fasciculatus_S2_contig761:16379..16504Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 16380..16504 +
1696842423.3455813-CDS-E_fasciculatus_S2_contig761:16626..167321696842423.3455813-CDS-E_fasciculatus_S2_contig761:16626..16732Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 16627..16732 +
1696842423.357418-CDS-E_fasciculatus_S2_contig761:17414..175241696842423.357418-CDS-E_fasciculatus_S2_contig761:17414..17524Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 17415..17524 +
1696842423.3665698-CDS-E_fasciculatus_S2_contig761:18245..183281696842423.3665698-CDS-E_fasciculatus_S2_contig761:18245..18328Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 18246..18328 +
1696842423.3753803-CDS-E_fasciculatus_S2_contig761:19710..198671696842423.3753803-CDS-E_fasciculatus_S2_contig761:19710..19867Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 19711..19867 +
1696842423.3839667-CDS-E_fasciculatus_S2_contig761:20551..206361696842423.3839667-CDS-E_fasciculatus_S2_contig761:20551..20636Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 20552..20636 +
1696842423.3921516-CDS-E_fasciculatus_S2_contig761:22236..223831696842423.3921516-CDS-E_fasciculatus_S2_contig761:22236..22383Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 22237..22383 +
1696842423.4001184-CDS-E_fasciculatus_S2_contig761:22873..230021696842423.4001184-CDS-E_fasciculatus_S2_contig761:22873..23002Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 22874..23002 +
1696842423.40929-CDS-E_fasciculatus_S2_contig761:23437..239171696842423.40929-CDS-E_fasciculatus_S2_contig761:23437..23917Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig761 23438..23917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig761.15777.1

>prot_E_fasciculatus_S2_contig761.15777.1 ID=prot_E_fasciculatus_S2_contig761.15777.1|Name=mRNA_E_fasciculatus_S2_contig761.15777.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=558bp
MYDDVLNGLGVGSACRGETRGGRLLAGFTATPRRADGLSLRPFFDHSIGS
LDLHWGIANGYLVDIHAFAVRTTTDIAALPTRMQDFSTGALSTAVNNDVR
NEAAARAMLEFGAGEPSSSGKKRSPRGIAFCADVRHAHDLARVLNEHNIS
AMAIDGGMNKKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCR
PTQSAPLYMQMLGRGTRPWLPPTPQANQPDMGADSTASRRRSDIAGSPKP
RMHVIDLVDNCGKHKASTCNSYTRAQRLMSTALGLSSGFCGDDASTDGMG
GAFSVEHVGSLAAEAMSLVDADGAAEVGDACSHPLLEAKTPRELALLVKH
YRLLQGAKTAETMLTVAGKGIGDGIPPPGWDLSQLSVGDRIGKDSFLRVV
VEAILLGYEEGQDDDESEGFDDEDVDYDDIDHDGNDNDDEDGYESSFRKP
HQRAKRRHFPRAHIRNRPSLRRRKKKNFAAGTATVHMRHASSGTIFSWRT
SGVKDTSGAELHEGASYRLVATIAEALAAGGAEGAGEIGVTRCRLTLVTA
DASSGRR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig761:12521..24901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig761.15777.1 ID=mRNA_E_fasciculatus_S2_contig761.15777.1|Name=mRNA_E_fasciculatus_S2_contig761.15777.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=12381bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig761:12521..24901+ (Ectocarpus fasciculatus EfasUO2)
CCGGCAGGAGCGACAGGGTCGATTAGCGTGCTTCGGCCTTACCAGTCCTC GGTGATCGACCGGGCCGTGGAGCTGTACGGACAAGGAACCCGGCGTCTTT TGGTTCCGCTGGCAACGGGCCTCGGCAAAACCGTGGTCTTTACACACCTT CCCCAGGTATATCCAGACATTATCCCTCCTGTCACCATTCGTTGCTATTA TAGACGTCCCTCGGTGTTCCTTCAGCCCCCCCCCCACATCTGCGTGAACG AGACCGGGCATTGTACGAACCGCAAGTTGGGGCTACTACTGTTCTCCATG TTCCTATTCTTCGGAGGTTTTCCTTTTTTTTGTGTCTTGGGTGGTCTTCC CTTCCCAGTTTCTCGGCATTTACCGCGACGATACGTGTCGCCAGAGGTTA GCCGAAGGTGGACGTGGTTTCTGTCACTATTGCTTCACCTATCGTACAGC TCTTCTATTTTGCCGCAACCGCTACGAAGCTACGAAGACCCTCTGCTTGG ATGGCCGCTGAGCCGCTTTGTGAAACGATGTTGCCACATTATCCACGCGT CCTTTGGGAGATTGATCGAAGCCAGAGATGAAAATGTTAACGGCGAGGGT CGCGGGCGTTGTCGATTCTTTCGCCAGCAGGCGTTCCCGGAGCTGTCCCG GCGGGGAACGTTAGTGCTGGTGCATCGCGACGAGCTCGTGCAACAGGTGA GGTACGCCCGTTCCTAACTCACGGTTCAAGCGGGCTCCCTCTGCACAGAC ATTCCCTCGTTCCTGGAAGGTTGCGGGATTCACCGATGATGTGGGGCTTG CCGGGAGGCGTCCTTGGAGGGGCCAGAACGAATATATCCAAGGATAATGT TTCGTGTGTGCCATTTGTTCAAGTTTGTCTGTCTTTCCTTTGTTCTCGCC AGGCGGTGGCGTCCTTCGGAAAGTTCCTGCCCCATCTCTCGGTGGGGGTG GAAAAGGGGCCGGAGACCGCACACGCTGGGTTAGATGTGGTGAGCTATTA GGTGATGTTGAAAGCGACCGCGTTGGTGCTGTTTGGTGCTGTTTGGTGAC TTGGAACAAATCAACCACCAACGAACACCATGAAATAGGGGTTAGCGTTG ATGCCAACACATCTGTGTAGGTTTGGTGCATTACTGTATCGAGAGATTGC TAGGCACAACCAGCCGTTCGTTTTTTCGGCAACCCCGTGTATTGGTATGG CGTCACAGGATCGTCTTCTGTCTACTTTGCTGTTTTGCTCGATTTTCTTT GTTTTCTTCATGAGCGTGGTTTGTGCCGCCCTTGACCAAATTTACTTGCT TGTTCGGGCGCGCTTTGCATACATACTACTGCGAGCCCACGTGAACCGGC GTTCTGCTGGCACCGGCAATGTATGCACTATGTTTGAAGGGGCGTTCATC TCCACGACCTGGATTCACTTGCTCCGGGACACCTCTGGGTTACCACATAT TCTTTCGTGGCGTCGTTCGCATCGCCGGTTGGCCCTGCCTTTTTTATTCG GTTACTCTCATGAAGCGGAAGCGGTCTGTAGACTTCCAACGTGTTTGTTT TTTTTTCGTTCGTCCCACGTAGACTAAATATCGTCGCAGGCTTGGTCGGG TCCGTGTGTCAGATCTTGGTTCGGTGAATTTGCGTGCGTACTTTCTTTTT TCACGACAAGGTGGTCGCTTCGGTTCAGACCCTTGGGAGGCGCGGTTCGG GAGCGGCGAGACTTCGAAAGTTCGCCAACTACGGCGGAGTAGTTGTCGTC GACGAGGTAAGTGCTTTCGTCGCCGTCAATTTAGCGTTGTCACATTCGTG TCACCGGTATTGTCCTTCACAAAACCATATGCTCATTGATTCGGCAAGGC TACCCAAATGTAAAAGCTTTGAAGATTATGTTGAGGTCGTCAAATATGAA ACGGTTTCAGAGGTTTCACTTGTGAATACGGGTTGTTTTAGCCGCGGAAT GTGCTGTGACGGGTGGCTGCCAGCATGAAGCCGCATATGGTCGCAGTGAA ATCGCGACCCGGTTTGAAAATGCAAGGTTTGCGACGGGTATCTTGTGGTG TTACACGAAGAAGCGCGCCGCATCCCGGCCCACTCACACCCTCTCAGGCA TCAAGATATAGGTCGGTTGCTCGTGGACGCCTAAAACTTGATCGTATCAT CCGCATTTTCGACGAGACAGAACCTCATGAAAAAAACGTCTGCCACGGTG AAGACGAAGACTGGAGGTGGACACCGTTGATAAAACGATGTTCTTGGGAA TCTCGCAGCCTTCTACCATCGGCAATCGTTCAATAGAGAACCCTGGAGAT TTTTCGAAGGCTGTTTCTCGGTTCCGCTTTCGGTTTGACAAAATAGCCAC GTCGGTTGCTACATGGCACGTGGGCGTTCGTTCACGACGGGATAGCTTCA GCCCTGTAGCAACCCCAGGTGCTCCTTTTCACGTGAGCGGCATACACGCG CTTGTGACAGCGTCCGTGGCTCGTGATGTCGTCCTCTTGATCTCCTCTGT TTCGCTGCAAGAAAGGCGCACCACGTGAAGGCGGGAGGAATGTACGACGA CGTGCTCAACGGGCTCGGCGTCGGCAGCGCGTGCAGGGGGGAGACCCGGG GCGGTCGCCTCCTGGCTGGCTTCACTGCCACACCGCGAAGGTTTGGCGAA GTGATTTGATTGATAGGAATACACAGCAGTCAAGCTGCGCGGGTAGTTTG ATGCACTTGCTTGTGGTACGAAACGTCAACAAGGGTACGGCTTTGAAGTA CGTTGCCAGGGGTAGGCGGTGTTCCTCTTTCTCCTCCGAGGCGCATCTTG TTTTCGTTGATGGTTTCCTTGATTCCCCACCCGCCGCGCATGAGCAACCG CCTCCATGCTCTTTCCATCTTCTGCCTCACCACAACCACGCAGAAGTCCA TCATGTCAAGCCTCGTAGAGAAGAGGCCCCACGAAGTGAACGGCCGTGCT CTCATCTCCCCAACTCGTCCTTGCCCCCCTTGCGTTTTCCTCTCAAAATT TCCGTTGCCCTTGTGCCGTCGAAAAGAGCGGACGGGCTGTCCCTGCGGCC TTTCTTCGACCACAGCATCGGGAGTCTGGACCTCCACTGGGGCATCGCGA ACGGATACCTGGTCGACATCCACGCCTTTGCCGTCAGAACCACCACCGAC ATCGCCGCGCTGCCCACTCGAATGCAGGTGTCGAAGCAGTATTCGTTGCT ATTCTTGCTCTCGGTATACCGTGTATGACGTAAGATAACACCCCCCCTGG GGCCGATTTTCAAAGCTCAATTACGCCACGACGAAGGGGATGCATAAACG AAACGATACATTTCGGAAAGATCCTAACGAGACAGCTCCAACCCCACCGT TTTCATCATCGTGACTCTTTGTGCTGTTGAGAAACCGAGCTTTGAAAATC GGTCCAAAGGGTGTGTTATCTTGTGCCGTATACTGTAGTTGCTTGTGGTG GTTGAGGTGTTTCTGTCTGGGGATGATGTTGGTAACATCGTTCGGCGAAT CGCCTAGCCAGAGGTGCATTTCTCGAGTTTTGTCATGCATTCGGTGTCTC CATCACGCATTCTCCTGGTGGTCGTGTAAAACGTGTCTACCGGTTGGCGG GTGAGGGTTTAGCCCAATCTTTTTCGGGCGGGGGGCGGGGCGTGGTCGGA CATGTGCCCTCGACGCGCGAAACGAAGGGAACTTGCTCAAGTTCTCCTCT GGGTATTCCCGTGTTGAAACGCAATCCACCGTTCCCGCTACTTCCTTCTG GTCCATCCCTTCCTCCCCCGAAGAGAGATCTGTGGACAGTTTCGACGTCA CAGCTCGACACTGAGTTGAAATCATTGTTCCTGGACGTTCCTGGTGTCCG TTTTTTTAGGATTTTTCCACCGGCGCGCTGTCTACCGCGGTGAACAACGA CGTCCGCAATGAGGCCGCTGCACGCGCGATGCTGGAGTTCGGTGCGGGTG AACCCTCGTCTTCGGGGAAGAAAAGATCCCCTAGGTGACAGACAGCCTGG TGAAGTGGAGTGGAAGTCGTGCACGAAGCGTTATTCTGCTGTAAGACACA GTTTTCTTCCTTGCCTCCCCTTGTTTTTCAGCGGCAATTCATTTTTCTTC CGGCAGGGGAATCGCCTTCTGCGCGGACGTCCGTCACGCGCACGACCTCG CCCGCGTCCTGAACGAGCACAACATATCGGCGATGGCGATCGACGGGGGC ATGAACAAAAAGGTGGAAGAGACTATATCGATGGAAGTAAATGTGCACTG TTAACGAGCGGACAGTGTGTGCCATGGGTAGTGCGGAGTGGTGAACAAAC ATGGCGGGAACGTTAAAGTAAAGACAGAGTTGGGGAGGGGTCGCATGCCA CGGTGCATGGGGATAAGCGATAAGGCATTGTGGGAGATCCGAAAGATACG GACAGAAAAAAGATTCCACATATGTGTTTCTACGAACGAAAAGCCAGCAT CGATAGACGGGATGTATCGTGCAGGTAGTAGGGTCGGCCGTGTTTGTTCA TCAAGTATGCGTTGGAGGTATGGGCAAGCAGGACAGGGAAGAAACGAAGG GCACCAAGGCTTAGGACATGAAAATCGTCGTAGCGGAAGTTGCGTCGACA CATCAACGTACCACCCAAGTAGGCTACGCGTTGCGGCTGTATTTGTTGCT CTTGTGGAGGTGCGTTTAAACGATGATTTCACAACGAACGAATTCTTAGC TGCTCTCACGCCAGCCCCTACCATGATCACTGCGCTTGGCTCGAGCACTC CTGTGCACACCAACAAGAACATTCTAGATCTCGCCGTTTTCTCCAACTTT AACCCGACTCGGTTGTGCTCCACTAGGCCACAAGAGGCTACGCTGAATCT TGTTCTTCCGGTTGTTTGCCCGTACCGCTGTGTCTCTGAGGCAGGATAGA GGACGGGCGTTGGCGGCCTTCCGGTCGGGGGAGGTTTCCACTCTCACTAA CTGCGGCGTCCTCACGGAGGGCTTTGACGCGCCCTTCTGTGACACGATTG TCATGTGAGCGAGTTTAGGAATGAAGAGTAGCAGAACGAATACGACGCGA TGCTTTGCCGACGTTGGTCTCGGTATGGGCGAGGGCACTTGCTTTTCGCA ATTAATCGACAAACACTGCCTGTTGTGCTCTTCAAATGGTGTCCCCTCTC TGCTTTCACTTCCTGGGCGAAGAGTCCCTGCAGTGCCGATTTCCGGCTCC AACGTTCATATATGCGTAGTAGTTCATGCATGTTGATGGTCTGGGAAAAC GAGGCCTCCAACAACCAGCCTGACACTCTTTCACCAAGTTCTATTGCCCC CACGATAGTCCGTCGGTAGCCCGCGCGATATGTTTGTTTGTCGCACAGAA GGAATGGCTCGGCACGCTGAAAAGGCTTTTGAAGGGAGCTACCGTTAACC CTCGATGTGCCTGACCCATGTTCTGCGCTAGAAATACAAGAGAATATCCT CTGTAGATTGTTCGATGCTCGAACTGTGGTAGATGAGCGTAAAGAGGGGA AAAAGAACTTGCTGTGCTGCCCCCTGCCCCTAATTTTCGGGTCAATTTCC AAAGACTTAGAATTAGGTGGAGGATATATTGTACTGCCCCGAGAAAAGAG CCTGAGCGATCAAGAACGAGCCTGAGTGATTAATGCAAGAGAATATTTGT TGTACATTGTACAAAGATTGATACACGGCATCCCCACGCAAACTTCGTTT TCTGAATATCCCTTGCATCGTTTAGGTGCCGCCCGACCCAGTCGGCGCCT CTTTACATGCAGATGCTTGGCCGAGGCACTCGTCCGTGGTTGCCACCAAC CCCCCAAGGTGCGGAGACCCCATGAATCACGGACAGGTCCAGCTGCGACA ATACCCAAAACAATGCGCTATTTTCCAGTGTTTTCATTGGTCCGCCGGGT AACGCTAGGTATAGGTGCTAACGAAGTACACACATAGAGATCTCTTTTGT CCTGGCTAACACCTGTTTCACCTCTTGGTCGACTAAAAGCGGAAATAAAC CACCCAGCGGGTGTTCACTTTCAGGGACAAGCTATCTTCGCGCTCTTGTT TGAGAACAATCTGTAGTGCAAAACTTTGGGGCACTCAGGGTGTAAACATA GCGCGGCGTGCGGACGAAACGACACCAGGACGACCTTGGGGGCAATCTTG TTGTGTTTATGGTGCACCCCTACGGCGACTATACTAGGTTTAGGGTAGGG TTCTTGACTGAGAGCACGTGTCTTCATGGCCAAGTTCTTAGATTTTGGAC TTTTCGAGGCTCAAGTGCTTAGCTGCTGCGTTCTTGAGTGGTGGCGTGGT CTGTACAGCAGTACGTGCCTTTTTGGTCGAATCCTGGCCGAACCCATAAT TTGCAGCCCCCCGTGTCGTACCTGGGGTGCGGAGCTGGTCTTGTATGCCC CTCGTCTTTTTTTCATGGTTCAAGGGCAACACGGCTACTAGCTTTGAGCT GGATGAGGAGTTCAAGTAGAACTGGTTCACAAACGTTTACTTCCTATTTC AACAAGTTCCTCATCGGTGACACATCGTTCGATTCAGCTCAAGAGTGTCA GTCGGGGTTGAGATCGTGGGTATTTATTGGGAGAGGGTGATATTTGGTGT GCCGCGAGCGATGAGTTGTGAGCCTGGTCAGCGAACCCTGTATGGCGCCA CTCGCGATGAAGCAAAATGCAGCTCCTACTGTGTGTGTGTCTGTAGGGCC GGGCGCTTGGGTGCACATGGACGGTTAGAGAAAGAGAAAAATACCAAAAA ACGCAGCTCACACTCTTTGTAGCAGCAAGAAAAATGCTTCATCATGAAAA TGGTACGATGCGAGAGCTATCACCCCTTCGCTTCAAGATCCACCAGCACA CCAGCCGCCAACGCAAGCAGCTGGCGATAGTTCCAAAGTCGGCTATGGCG AGTCCGTAGCGGCAGGGACTCGTCGTCTTGAAGGGGCTCGTCGTCTTGAA GGGGGCTCGTCGTCAGCGGTCTCTTGACTCAACGCGCATGTGCCCCGCTC TCTCTCTCCCACCTCCTGTACGGACCGCGAGGCCTGTGTGTCATCTCAAT ACACGGCCTTTGGCGGAACACCAACGACTCCTCCCAGGGATGGGAAACGG AGTAGCGAAACGAAATCGTCGTAGAACCAACTATAATGTGGCATGCTAAT GAGTACGAGCGCCCTCCTCCCCTCCCTCCGTCAACTGCAGCGAACCAGCC GGATATGGGTGCTGATTCGACGGCCTCAAGGCGACGAAGTGACATTGCGG GGTCACCCAAGCCCCGCATGCATGTGATCGACCTGGTCGACAACTGCGGG AAGCACAAGGCGAGCACATGCAATAGTTACACGCGGGCTCAGCGCCTGTT TGATTAAACAACCTTGCCGCAGTTTGTGATTCGTGGTTTGCACCACAACG CTCGACATTCCTCCGGTCAGATGATGAGTGGGTGTTCTCTGTTCCAAACC AGAAGAACGCACGATTCTACCAAGTCAAGGAACAGTAAAGCAGCAGCAGC AACACCAGCACCAGCAGCAGCTTTTACTGCGGTGTGCCGTCCCGAACAAG GCAAAGCTCTATCCGGCACACCCCTGCACAATACCGTGATAGTAGGCAAA CCGTGCGGTAGATGCAACACACCTAGGAGGGCTATATCGGCACTGCCGGG GGCAAGAGGTTACACGATGATATTCTTTACTCTCAAAGGGTAAGTCACCT TGTTTGTATTTCACTTGCATCTTTTCGTACCTTCCTCGTGGTAACACACG AAAGTTACCTACAATGCCAAGGAGTTAAGATATTTTCCAGGGGTAGGTCG ACAAACATCTCGCGCGCCCCAGTGTCGCATCGAGCTTATCGATGCTTTTG GTATGCTGCTGGAGGGAGGGTTGTAGACACATCATCACACAACACAAACG CTAAGTGCACAAGAAACTTAATTTATGTCGGCCACGAAAGACGGAGACAG TTAATAATACGAGCCCGTTTTTGCATGCGCGATCATCGGGGCTGGCGTAA CGGCGTCCTATACTGGAACCCAGGTGATGAGCATGTCGACTGCTTTAGGG CTTTCCTCCGGGTTTTGCGGCGACGATGCTAGTACGGACGGAATGGGTGG GGCGTTCTCCGTGGAGGTGAGAGATAGCCCGCCGTCGATTGACCGTTTGG ACGTGAATGCGTTGTTTGATGGAAAAACTTGTAGCAATGCAAAGTTGATG GTGCGGAATATGTTTTCCATGGGATATATTACCGTGGGATAGCGTTTTTT CGGCGTGGTAAACGGTATGGGTCCATCCGAGATGTGCGCGGCACCCCTAT TGTACGTGGTGTCGCCGTCGGCGGGTGTGTGTGGTAAGAGGAGAGGATGC AAGAAATCGTCTGCTCGGCGACGGCACGATGAATTTGCCCTGTCCCGCTC CACGGTAAGCTTTACCGGCATGCTACCCCCAGTTCGGATCATCTAAGAGG CTAGCGTGCTTGGCCACTCAGGTGGGCGCAGCTTGTGCTTATGCCGAGTT TTTACAGCGGCTTGGCCAAGCCAGGCCGAGATGGAAACGTCGTGTTTTGT TTTGGCAGCCAAGTCGGTGGGAATTGCTGCTAGAGTGCACCAACTGAGAG CGCATCATTGCCATACTTATCTGTCACGAATTCCAGACCACGAAATGGAT CCCCACCAGCACAAGTTTTTCCGTGGAAGACGGCAAGACACTTCCTGTTT TCACGCAATCTACCGACTGCAGTCTCCATAAATGCATGCTCAGTATATTC TTCCCGTCATTCATGCCACGACTATGTCCCCCTTTCACGCATCGGATTGA TATGGCAAGTCGGTTTGAACTCACCCTGCACAACAGTACCACCTTCTTTT AATAAAACCCAAAGCCCAACGCTCGAATTAGTCAGACGCACCTGGACCAA CATGTCTTCTCTGAAAAATGTTTTCTGGTCCATCACTCTCTCTCTCTCTC TCTCTCTTGGCACTTACTATTATATTCCCGTCAGTGTTCGCTCGCTCCTT CTTCCTCTCGTCTTTCTTCTCCGCGCACGCGTTCAGAATCCCGCGCTCGT CAGCACCCGTTTTTAACTCGGGATTTCGCCGTAGGATGCTCTTCTCTTTA GACGTCTTCATATCGAGCATGTGGAGAAACGCCGCTCGAATACAGCAGTG TTGGTCAGCAGTGTTGGTTTGCTTCGTCGTTAGACTGTGTGTGGGTGAAT CTTCATGCTTGCGACGTATTCTTTGCCAGGGAAACAGGCAACAGCACTAC CCCTCAAGCGTTTTGCCCACCGGCAGACACAATCTGACAACGAAGCTAAC CAGCACTTTCGTTTGGGCAATTTCCTCCGTTTTCGATACGAAGAAGAGCA CGTTGCAGACGGGTTGCGAGTTGACGACCGATTGTGTCGAGAGCGTGATT CTGAATGCGTGCGTGGAAGTGAAGGGCAGGGGTGGAAGGAGCGGGCGAAC ATTAAAGGGTTGTGCATAGTGCCGAGGGAGAGAGCGTAATGAGCGTTGCC TGAGTAGAAAGACGTTGTGAGAGAAGATTTAGGGAGGCAATGTTAACGCC GTGTTGTTGTGGCGTTGATGGCGTTTACCTTGTGTTTATCCCCCTACGGC CGGATACCTCCGTATGGAGCCAACAGGCCATTGTTCATAGCGACCCTCCA AAGTGTCACCCCCAAAATTCTATCTCTCAGTCTCGAGGCGTCGTGCGTGT GGTCTGTTTTCTGTAGCATGTCGGGTCCCTCGCTGCAGAGGCTATGTCTT TGGTCGATGCTGACGGCGCCGCCGAGGTGGGGGATGCTTGCTCTCATCCC CTGCTGGAAGCCAAAACCCCTCGGGAGCTTGCGCTGCTTGTGAAGCACTA CCGTCTCCTGCAGGTGAGATCGAAGTTCGGTGGCCGTCACCGTGGAATTG CATTGCCTGTGTCTTCTGCTTTGCTGGCCGGGTTCGACGGGTTTTTTTGT GTTGCGTTTTGCTTGTCTGCCCGGTGAAGATATGGGGGGTACCCAAACGA TCTCGTGAGTGGAGGTGATGCTCAGGAACTGGGGGTTAGACCGCATACCT CACGTACGCAAGCGCTCGCAATGCATTATTTCGTCCTGGTTCTGCACAGC AGCTCCAAACGGCAATTGAGCGGACGAAGTACAACGGAAATTCGAAGCTT TGAGAATCAAAAGCCATAGCTTTGTGTTCAGACATTATGGAGACACAGCA CGGTACACTCAAGATGGGCGTGAACTGTATTTTACAAGGTTCGGTACTGG CTTGTGAGTCACTGATGAACCGTGCGTTTGGAAGAATTGGCAAGCTAAGC TGCCGCGACCACCTCGCCGTTTGTCATCCCCCCCCCCGCCTTGACCACTT TAGGGAGCAAAAACAGCGGAGACCATGCTGACGGTGGCAGGAAAAGGGAT AGGCGATGGAATTCCTCCTCCCGGTTGGGACTTGTCCCAGCTTTCCGTCG GAGATCGAATCGGAAAGGACTCGTTCTTGAGGGTGAGTTGGCGGTTGCAA CTGGCGCTGCTGTTGTTGGGGCAATTATTGAAGCTGCTGATGTTTCGTCG TTGGTCGTCGGTTGCTGTTCTTGTCGTTGTCGGTTCTCTCCACGACGATG GTGCGGCGGTCGTGCTTGAGCATGCTCTTGGGTTTTCTGTTGTCATCAAA GTCGTGGTCATTGGTGCAAATAGTGCATCTTGCCAGCAAAGTAAAACCGG CTCTTCATTTTTGGAATATTACGCATCCCTTCCCTCTTTTCCTGAGTAAA CCATGCCTACCGTTGCTATTCCGTTATGGGCACTTGGGCGTTCGGCTTGA TGGTGGGAAGGTTTGCCTTCACTGAGATGCGCTCCTCCTCAATTATCAAA TATCTGAAGGGTTGAAGGCTACCACCGGATCCATACGTCCTGCCCCTATT CCCCCTTCCGAGCCAAGGTTGTCGTAGAGGCCATCTTGTTGGGGTACGAA GAAGGACAAGACGATGACGAAAGCGAAGGTTTCGACGATGAGGATGTCGA CTACGACGACATTGACCACGATGGTAACGACAACGACGACGAAGACGGCT ACGAAAGCAGCTTCCGCAAGCCGCATCAAAGAGCGAAGCGACGGCACTTT CCTCGAGCCCACATCCGAAACCGCCCGTCCCTGCGACGGCGCAAGAAAAA AAACTTTGCCGCTGGTACCGCGACCGTGCACATGCGCCACGCATCGTCGG GCACCATTTTTTCATGGAGAACATCCGGGGTTAAGGACACGAGCGGAGCG GAGCTGCATGAGGGGGCGTCATACCGGTTGGTGGCAACGATAGCAGAGGC GTTGGCAGCAGGGGGGGCGGAAGGAGCGGGAGAGATCGGGGTAACGAGAT GTCGGCTCACGCTGGTGACGGCCGATGCGTCTAGCGGCCGCCGATAGGTT ATGGTTTGCGAAAGAGTGGAGGTTCGTGTGAGCTGATGAGATGATTGGAT GGGCTGCACGACAACGTGGACAGGCCCGCAGCGCGCGACCCCGACCACGC CGACCCTCGCACAGCCGTACGGTACTTCGACCGATCACTCGCTATGCGTC GGCAACGCGGCACCTGGGCCGAGTCCGCCGAGCGTCCTCTCGCTCGGCTG CTACGGGAGCAGCGCTTGTTCTCGAGGCGTCAATCTTGAAATCGGGATAA CCGTCAGCATGTTTTCTGTGTGCATAGACGACTAGACCGACCAGTGTAAG GCTGTAGACAGGGACCGAGGTCGTTGGAAGAGTGACGTGACGACCAAGGG CAGTTCTCAAGTATAAGGTAATCAAATAGCTGCAACATGTACCACCAAGG CACAAGTTAGACCAATCAGGGTGCTGTATTGATGCATATCGAGAGTGACG GATGTCTTTGTAACGACTTTTATGGACGTAGGACAGTCCGGGCGCCGTGA AGCCTCGCGCACATGATCGCTCTTGCTTTCTACCCTCAGCTCGACTTTCC AGAGCTGTGCGCGGAATGGGCTTGAGTCAAGTACGAGACACAAACTGTCG AGGTAGAACACACAACAACTCTTGAACGCAAGTGCATCCACATATCGAAG CGAGAACCTGTAGAACTAAAGAAGCGGAACTACAGTTCTCTTCACGTTTT GGTGCGGGTGTTCCAGAATATTCTCTGGCATGTATTTCGGGTGTATCAAC TGGGAAACAACGGTTGAATCGGAATTCTTGCGCTTACGGAGTCTCGATTT ACCGGCATCGCACGGTATCTTGCCGAGATCGCGGAGCAACTCGTTTCACA CTTTACGCGTGTATGATGCTTGCGAGATGGTCTTACGTTGACTGTTTGGC CCGTTTCCTAGCGTTGACCCATCATCGCGAATTGAAATGGCTTGCGTGTT GTCAACAGTACAGACACCCCGTTGACCATCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig761:12521..24901+

>mRNA_E_fasciculatus_S2_contig761.15777.1 ID=mRNA_E_fasciculatus_S2_contig761.15777.1|Name=mRNA_E_fasciculatus_S2_contig761.15777.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1674bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig761:12521..24901+ (Ectocarpus fasciculatus EfasUO2)
ATGTACGACGACGTGCTCAACGGGCTCGGCGTCGGCAGCGCGTGCAGGGG
GGAGACCCGGGGCGGTCGCCTCCTGGCTGGCTTCACTGCCACACCGCGAA
GAGCGGACGGGCTGTCCCTGCGGCCTTTCTTCGACCACAGCATCGGGAGT
CTGGACCTCCACTGGGGCATCGCGAACGGATACCTGGTCGACATCCACGC
CTTTGCCGTCAGAACCACCACCGACATCGCCGCGCTGCCCACTCGAATGC
AGGATTTTTCCACCGGCGCGCTGTCTACCGCGGTGAACAACGACGTCCGC
AATGAGGCCGCTGCACGCGCGATGCTGGAGTTCGGTGCGGGTGAACCCTC
GTCTTCGGGGAAGAAAAGATCCCCTAGGGGAATCGCCTTCTGCGCGGACG
TCCGTCACGCGCACGACCTCGCCCGCGTCCTGAACGAGCACAACATATCG
GCGATGGCGATCGACGGGGGCATGAACAAAAAGGATAGAGGACGGGCGTT
GGCGGCCTTCCGGTCGGGGGAGGTTTCCACTCTCACTAACTGCGGCGTCC
TCACGGAGGGCTTTGACGCGCCCTTCTGTGACACGATTGTCATGTGCCGC
CCGACCCAGTCGGCGCCTCTTTACATGCAGATGCTTGGCCGAGGCACTCG
TCCGTGGTTGCCACCAACCCCCCAAGCGAACCAGCCGGATATGGGTGCTG
ATTCGACGGCCTCAAGGCGACGAAGTGACATTGCGGGGTCACCCAAGCCC
CGCATGCATGTGATCGACCTGGTCGACAACTGCGGGAAGCACAAGGCGAG
CACATGCAATAGTTACACGCGGGCTCAGCGCCTCATGTCGACTGCTTTAG
GGCTTTCCTCCGGGTTTTGCGGCGACGATGCTAGTACGGACGGAATGGGT
GGGGCGTTCTCCGTGGAGCATGTCGGGTCCCTCGCTGCAGAGGCTATGTC
TTTGGTCGATGCTGACGGCGCCGCCGAGGTGGGGGATGCTTGCTCTCATC
CCCTGCTGGAAGCCAAAACCCCTCGGGAGCTTGCGCTGCTTGTGAAGCAC
TACCGTCTCCTGCAGGGAGCAAAAACAGCGGAGACCATGCTGACGGTGGC
AGGAAAAGGGATAGGCGATGGAATTCCTCCTCCCGGTTGGGACTTGTCCC
AGCTTTCCGTCGGAGATCGAATCGGAAAGGACTCGTTCTTGAGGGTTGTC
GTAGAGGCCATCTTGTTGGGGTACGAAGAAGGACAAGACGATGACGAAAG
CGAAGGTTTCGACGATGAGGATGTCGACTACGACGACATTGACCACGATG
GTAACGACAACGACGACGAAGACGGCTACGAAAGCAGCTTCCGCAAGCCG
CATCAAAGAGCGAAGCGACGGCACTTTCCTCGAGCCCACATCCGAAACCG
CCCGTCCCTGCGACGGCGCAAGAAAAAAAACTTTGCCGCTGGTACCGCGA
CCGTGCACATGCGCCACGCATCGTCGGGCACCATTTTTTCATGGAGAACA
TCCGGGGTTAAGGACACGAGCGGAGCGGAGCTGCATGAGGGGGCGTCATA
CCGGTTGGTGGCAACGATAGCAGAGGCGTTGGCAGCAGGGGGGGCGGAAG
GAGCGGGAGAGATCGGGGTAACGAGATGTCGGCTCACGCTGGTGACGGCC
GATGCGTCTAGCGGCCGCCGATAG
back to top