mRNA_E_fasciculatus_S2_contig7586.15746.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7586.15746.1
Unique NamemRNA_E_fasciculatus_S2_contig7586.15746.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Haloacid (dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN8_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.590e-91
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 1
Query:    1 EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT 435
            EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRL+DEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLER+QIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGL+AAKAAGMNCLV K   T
Sbjct:  114 EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLVDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERMQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYT 258          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FPW0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.290e-58
Identity = 96/145 (66.21%), Postives = 112/145 (77.24%), Query Frame = 1
Query:    1 EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT 435
            +VGWP   ++ + R  LVK LHL KT LFN+ + +G IPLR GV+R++DEAI   VPL VCSTSNDKAVTNLV TLMG ER  +IQIFAGD+VEKKKP+PD+Y LAK+TMGLD    +VIEDSHIGL AAK AGMNCLV K   T
Sbjct:  111 KVGWPAEYESDESRRELVKSLHLRKTDLFNEMICEGIIPLRPGVLRVVDEAISAGVPLGVCSTSNDKAVTNLVLTLMGPERRSKIQIFAGDVVEKKKPSPDVYLLAKETMGLDAGSTMVIEDSHIGLQAAKGAGMNCLVTKSSYT 255          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: HAD-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K7_9STRA)

HSP 1 Score: 184 bits (468), Expect = 8.490e-56
Identity = 91/145 (62.76%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    1 EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT 435
            +VGWP       ++  LV+ELHLLKT LFN+A+V G+IPLR GV+RL+DEAI ++VPLAVCSTSN++AV+NLV TLMG+ER ER +IFAGD+V  KKP PDIY+LA + + L P RV+V+EDS IGL AAK AGM CLV K   T
Sbjct:   90 KVGWPLGITEKADKQALVQELHLLKTDLFNEAIVAGKIPLRPGVLRLVDEAIEQEVPLAVCSTSNERAVSNLVLTLMGRERYERFRIFAGDVVRAKKPQPDIYNLAAEALRLSPERVIVVEDSGIGLRAAKGAGMPCLVTKSSYT 234          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EGM7_VITBC)

HSP 1 Score: 181 bits (460), Expect = 3.650e-54
Identity = 90/145 (62.07%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    1 EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT 435
            E GWPD  +T +E++ LVKELHL KTA+FN  +  G++PLR GV R++DEAI    PLAVCSTS+DKAVTNLV  L+G +R  R +IFAGDIV KKKP+PDIY LA   M LDP++ +VIEDS IGL AAKAAGM C+V K   T
Sbjct:  130 EGGWPDGYRTPEEQAALVKELHLRKTAIFNDLINQGQVPLRPGVARIVDEAIAAGCPLAVCSTSSDKAVTNLVNVLLGPQRAPRFRIFAGDIVAKKKPSPDIYLLAAQQMNLDPSKCLVIEDSGIGLKAAKAAGMRCVVTKSSYT 274          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D896_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.220e-53
Identity = 90/145 (62.07%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT 435
            +VGWP    +  +R  LV+ELH+LKT LF   + +G++PLR GV+R++D AI   VPL VCSTSNDKAV  LV+ LMG+ER+   QIFAGD+V KKKP PDIY LAK+ MGLD  R VVIEDSHIGL+AAKAAGM CLV K   T
Sbjct:   40 KVGWPLGYDSDAKRQDLVRELHMLKTNLFMNYIEEGKLPLRPGVLRVVDAAIAAGVPLGVCSTSNDKAVRTLVRVLMGEERMSHFQIFAGDVVPKKKPWPDIYLLAKEQMGLDAGRTVVIEDSHIGLTAAKAAGMKCLVTKSSYT 184          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWZ9_AURAN)

HSP 1 Score: 179 bits (453), Expect = 1.520e-53
Identity = 87/139 (62.59%), Postives = 107/139 (76.98%), Query Frame = 1
Query:    7 GWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRK 423
            GWP      D+R  LVKELHL KTA+FN+ +  G IPLR GV+RLIDEA+   VP+ VCSTS+++AV NLV+ LMG+ER + +QIFAGD+V  KKP PD+Y LA  TMGL+PAR VVIEDS IGL+AAKAAGM C++ K
Sbjct:  102 GWPAGYAGGDDRRALVKELHLRKTAIFNELIEAGSIPLRAGVLRLIDEALADGVPVGVCSTSSEQAVRNLVRVLMGRERYDALQIFAGDVVANKKPAPDVYLLAATTMGLEPARCVVIEDSSIGLAAAKAAGMKCIITK 240          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Protein (cbby n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBX2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 4.780e-53
Identity = 89/145 (61.38%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT 435
            +VGWP    +  +R  LV+ELH+LKT LF   + +G++PLR GV+R++D AI   VPL VCSTSNDKAV  L++ LMG+ER+   QIFAGD+V KKKP PDIY LAK+ MGLD  R VVIEDSHIGL+AAKAAGM CLV K   T
Sbjct:  111 KVGWPSGYDSDAKRQDLVRELHMLKTNLFMNYIEEGKLPLRPGVLRVVDAAIAAGVPLGVCSTSNDKAVRTLIRVLMGEERMSHFQIFAGDVVPKKKPWPDIYLLAKEQMGLDARRTVVIEDSHIGLTAAKAAGMKCLVTKSSYT 255          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.320e-52
Identity = 89/147 (60.54%), Postives = 107/147 (72.79%), Query Frame = 1
Query:    1 EVGWPDCAKTADERS--VLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT 435
            EVGWP      D+ S   LVKELHL KT  FN+ +  G IPLR GV+RL+DEAI   V LAVCSTSN+KAV NLV TLMG+ER  + Q F GD+V+KKKP PD+Y +AKD+MGLD ++ ++IEDS IGL AAKA+GM CLV K   T
Sbjct:  108 EVGWPSSVSLHDDESKATLVKELHLAKTDEFNKMIKSGAIPLREGVLRLVDEAISNNVSLAVCSTSNEKAVKNLVLTLMGEERYSKFQFFCGDMVKKKKPAPDVYLMAKDSMGLDASKTIIIEDSGIGLQAAKASGMKCLVTKSSYT 254          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJB9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.430e-52
Identity = 84/141 (59.57%), Postives = 111/141 (78.72%), Query Frame = 1
Query:    1 EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRK 423
            EVGWP   + A+ +  LVKELHL KTA+FN+ +  GEIP+R GV+ LIDEA+   VP+ VCSTS+++AV+NLV+ LMG  R ++I I+AGD+V+KKKP+PD+Y LA + MGL+PA+ VVIEDS IGL+A KAAGMN +V K
Sbjct:  111 EVGWPAGYEDAESQQALVKELHLRKTAIFNEMITKGEIPIRKGVLNLIDEALADGVPVGVCSTSSEQAVSNLVRVLMGDARADKIPIYAGDVVKKKKPSPDVYLLAAEKMGLEPAKCVVIEDSSIGLAAGKAAGMNVIVTK 251          
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2Q9B2_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.340e-51
Identity = 88/146 (60.27%), Postives = 109/146 (74.66%), Query Frame = 1
Query:    1 EVGWPDCA-KTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT 435
            EVGWP    ++ DER+  VK+LHL KT +F   + +G IPLR GV+RL+DEAI   V LAVCSTSNDKAV+NLV TLMG ER  + QIFAGD+V+ KKP PD+Y++A D M LD +R V++ED+HIGLSAAKAAG+ C V K   T
Sbjct:  102 EVGWPSVMPESPDERAAQVKKLHLEKTDIFMDLIDEGVIPLRPGVLRLVDEAIEAGVRLAVCSTSNDKAVSNLVSTLMGPERAAKFQIFAGDMVKAKKPAPDVYNMAVDEMKLDKSRCVIVEDTHIGLSAAKAAGIKCCVTKSSYT 247          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7586.15746.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Haloacid1.590e-9195.17dehalogenase-like hydrolase family protein n=2 Tax... [more]
Hypothetical2.290e-5866.21protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
HAD-like8.490e-5662.76domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized3.650e-5462.07protein n=1 Tax=Vitrella brassicaformis (strain CC... [more]
Uncharacterized1.220e-5362.07protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Uncharacterized1.520e-5362.59protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Protein4.780e-5361.38cbby n=1 Tax=Nannochloropsis gaditana TaxID=72520 ... [more]
Hypothetical1.320e-5260.54protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical2.430e-5259.57protein (Fragment) n=1 Tax=Pelagomonas calceolata ... [more]
Hypothetical2.340e-5160.27protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7586contigE_fasciculatus_S2_contig7586:5508..6872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score274.2
Seed ortholog evalue3.4e-71
Seed eggNOG ortholog2880.D7FWN8
Model size435
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.pseudouridine 5'-phosphatase activity
EggNOG OGsCOG0637@1,KOG2914@2759
Cds size435
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842419.6200109-CDS-E_fasciculatus_S2_contig7586:5507..56211696842419.6200109-CDS-E_fasciculatus_S2_contig7586:5507..5621Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7586 5508..5621 -
1696842419.638169-CDS-E_fasciculatus_S2_contig7586:6095..62421696842419.638169-CDS-E_fasciculatus_S2_contig7586:6095..6242Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7586 6096..6242 -
1696842419.6541986-CDS-E_fasciculatus_S2_contig7586:6698..68721696842419.6541986-CDS-E_fasciculatus_S2_contig7586:6698..6872Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7586 6699..6872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7586.15746.1prot_E_fasciculatus_S2_contig7586.15746.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7586 5508..6872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7586.15746.1

>prot_E_fasciculatus_S2_contig7586.15746.1 ID=prot_E_fasciculatus_S2_contig7586.15746.1|Name=mRNA_E_fasciculatus_S2_contig7586.15746.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=145bp
EVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDE
AIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNP
DIYDLAKDTMGLDPARVVVIEDSHIGLSAAKAAGMNCLVRKKYRT
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mRNA from alignment at E_fasciculatus_S2_contig7586:5508..6872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7586.15746.1 ID=mRNA_E_fasciculatus_S2_contig7586.15746.1|Name=mRNA_E_fasciculatus_S2_contig7586.15746.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1365bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7586:5508..6872- (Ectocarpus fasciculatus EfasUO2)
GAGGTGGGCTGGCCTGATTGTGCTAAGACAGCCGACGAGCGATCGGTGCT CGTCAAGGAGTTGCACCTCCTCAAGACGGCGTTGTTCAACCAGGCCGTGG TGGATGGGGAGATACCTCTCAGGACGGGGGTCATCCGATTGATCGACGAG GCCATCTACAGGAAGGTCCCCTTGGTAGGTCCGAGTGCTGCACACGTGTC TTTTTCTTAACCCACGTTTTTTCTAGGGTGGTAGTACGCAGCAGTAGTAC GCAGCAGTAATTCTACTGTCTCATCACGCCCCCGTGGGAATGGACACCTG AGAAGCAATGATAGCGTTGGCACAAGAGCTAAAAAAAGAGAGTGGTACGG GCCACCCAAAGATGATTCAGTCGGTAACTACGTGGTGGTTCTATTGTAGG CTGTGGGGTTCGAATCTCTACGTAGCGAAAACCTTGCAAATCCAATATTT TCTTCGAGCTCTTGATGTCCTGCCCCTTTTGGGGCGACGACGAACAAGCT AACATTGTGGCCTAACCCGTTTTTCTCCAGCCTTTCCCATTTCCGCCATG GTTTGCCAAAGTACCATCCCACGATATGTAGTCAGAAACACCATCGGCTG CGGTCTGTCTTGAATACATGATCACACCAGGCAGTGTGCTCGACTTCGAA CGACAAAGCTGTGACAAATCTGGTCAAGACCCTGATGGGGAAGGAGCGGC TGGAGCGGATACAAATATTCGCCGGCGACATCGTGGAAAAAAAGAAACCC AATCCGGATATTTACGACCTCGCCAAGGTAGGCGTGAGCGGAAATCAGCC GGGGGGGACACCTTGAACCCCTTGTTCGATACTGCTGTCAGTGTGCAGTT TACTTGCCTCATATCGTGCTGCCACATGGAGTTGCCACGGACGATACTCG TCGAGTTTGTTTCCCCTTCCACACTGCCGTCAGGAGATAAGTTTTTTTCC CTTCATGTTCGTAAACGTGACGCTACATTGATTTGCCACGGACGTATTCG TGGTGTTTATTTCGCTTTTCGATACTGCTGTCGGTGGATAGTTTTACGTA CTCCTTGTACGTCGTAACGTGAAACTACTGATTTGCCACGGACGATGTTC GTGGGCGGCGCGCAAGACCTCCTCAGCTGACAGCAACCGACTGCGTGCAC GCAGCGGGGAGTGTCACTCGTCACGTACGTCTAAGACTAGGCAGTCGTCG TCGCTAACGCCGTCGCCATCCATGATTCGCCCGTTTGCTTGATGCGGGCA GGATACAATGGGGCTGGACCCTGCTCGCGTGGTCGTCATCGAGGACTCGC ACATCGGACTGAGTGCAGCAAAGGCTGCCGGGATGAACTGCCTGGTGAGA AAAAAATACCGAACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7586:5508..6872-

>mRNA_E_fasciculatus_S2_contig7586.15746.1 ID=mRNA_E_fasciculatus_S2_contig7586.15746.1|Name=mRNA_E_fasciculatus_S2_contig7586.15746.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=435bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7586:5508..6872- (Ectocarpus fasciculatus EfasUO2)
GAGGTGGGCTGGCCTGATTGTGCTAAGACAGCCGACGAGCGATCGGTGCT
CGTCAAGGAGTTGCACCTCCTCAAGACGGCGTTGTTCAACCAGGCCGTGG
TGGATGGGGAGATACCTCTCAGGACGGGGGTCATCCGATTGATCGACGAG
GCCATCTACAGGAAGGTCCCCTTGGCAGTGTGCTCGACTTCGAACGACAA
AGCTGTGACAAATCTGGTCAAGACCCTGATGGGGAAGGAGCGGCTGGAGC
GGATACAAATATTCGCCGGCGACATCGTGGAAAAAAAGAAACCCAATCCG
GATATTTACGACCTCGCCAAGGATACAATGGGGCTGGACCCTGCTCGCGT
GGTCGTCATCGAGGACTCGCACATCGGACTGAGTGCAGCAAAGGCTGCCG
GGATGAACTGCCTGGTGAGAAAAAAATACCGAACG
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