mRNA_E_fasciculatus_S2_contig7569.15729.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7569.15729.1
Unique NamemRNA_E_fasciculatus_S2_contig7569.15729.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK8_ECTSI)

HSP 1 Score: 513 bits (1321), Expect = 7.720e-184
Identity = 236/249 (94.78%), Postives = 240/249 (96.39%), Query Frame = 1
Query:    1 LMSGGGGAITTGGRRELTWSNPTGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLPEWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRKEVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVRIGAPQ 747
            +MSGG GAITT GRRE+TWSNP GDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAER PEVGFTREVGASIEDESLPEWG EILACFMDCETNPFTGKPFFNEVVF HRPTKTLITSDLYWNYPRKEVP GTRVWKWGMDKVYLPF+K+FMVTDGEAF SKVNQILDWGVETIVPCHGGIVR GAPQ
Sbjct:    1 MMSGGSGAITTAGRREMTWSNPMGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERQPEVGFTREVGASIEDESLPEWGDEILACFMDCETNPFTGKPFFNEVVFFHRPTKTLITSDLYWNYPRKEVPLGTRVWKWGMDKVYLPFYKKFMVTDGEAFVSKVNQILDWGVETIVPCHGGIVRSGAPQ 249          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Hypothetical (protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8N9_9EUGL)

HSP 1 Score: 312 bits (799), Expect = 9.150e-100
Identity = 134/232 (57.76%), Postives = 177/232 (76.29%), Query Frame = 1
Query:   55 WSNPTGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLPE-WGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRKEVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVRIGAPQ 747
            WSNP  + + +V  D+W AERPF+WN IDVGG+MAVV+L+DGSLWVHSPV+LD PLK ALA+LGPV +I+SPNYEHVKYA+QW++AYP A++Y CPG  E+ P++ F  EVG      ++PE W  ++L  +MDCE NPFT  PFFNEVVF+H PTKTLI +DL+WNYP  + P GTR WKWGMD+VYLPF+K+FM+ D   F + V++I+ W  ++++PCHG  +  G  +
Sbjct:  176 WSNPGKEVLKKVAPDLWVAERPFIWNSIDVGGKMAVVRLADGSLWVHSPVELDAPLKAALAALGPVKYIMSPNYEHVKYAQQWIDAYPDAIAYGCPGAKEKFPQISFQAEVGVG---NAVPEAWASDLLVTYMDCEHNPFTRSPFFNEVVFVHLPTKTLIVTDLFWNYPI-DAPAGTRAWKWGMDEVYLPFYKQFMICDRSRFKTAVDRIVAWDFDSVLPCHGTYIAQGGKE 403          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMY2_KLENI)

HSP 1 Score: 299 bits (766), Expect = 2.330e-98
Identity = 133/236 (56.36%), Postives = 169/236 (71.61%), Query Frame = 1
Query:   46 ELTWSNPTGDDMVQVL-GDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLPEWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRKEVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVRIGAPQV 750
            + TWSNP+G+ + +V+ G VW AERPF+WNGIDVGG+M VV+L DGS+WVHSPV LD  LK A+  LGPV HIV+PNYEH  +A+QW+EAYP A +YACPGL  + P+V +  E+GA+    +  EWGGE    F DCE NPFT KPFFNEVV++H P+  L  +DL+WNYP K VP GT +WK GMDKVYLPF+K FM+   + F  ++  +L WG   I+PCHG +V   A  V
Sbjct:   90 DKTWSNPSGNVLTEVVPGQVWAAERPFMWNGIDVGGKMGVVRLRDGSVWVHSPVPLDNQLKAAMDQLGPVKHIVTPNYEHAGFAQQWIEAYPDAKAYACPGLRAKKPDVRYAAEIGAN-GSATPAEWGGEFSFAFFDCEHNPFTLKPFFNEVVYVHHPSGVLFVTDLFWNYPGKAVPPGTFIWKQGMDKVYLPFYKYFMLKRKDKFEQRLKTVLSWGFSIILPCHGTVVDEKAADV 324          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Uncharacterized (protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RQ74_9CHLO)

HSP 1 Score: 289 bits (739), Expect = 4.600e-95
Identity = 136/250 (54.40%), Postives = 172/250 (68.80%), Query Frame = 1
Query:   22 AITTGGRREL------TWSNPTGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLPEWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRKEVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQIL-DWGVETIVPCHGGIVRIGAPQV 750
            A  TG RR +      T++N +G  + Q+  +VW A+RPF+WN IDVGGRMAV+KLSDGS+WVHSPV LD+ L  AL  LG V HIVSPNYEH KYAKQW+E YP A SYACPGL E+ P+V +T E+G    +   PEW GE+    +  E NPF GKPFFNEVVF  +P K LITSDL+WNYP  + P GT++WK+GMD+VYLPF++RFM++D   +     +I  +W  E I+PCHG  V     +V
Sbjct:   20 AAATGERRMISREKYSTFTNTSGKVLQQLAPNVWAADRPFIWNRIDVGGRMAVLKLSDGSIWVHSPVQLDDDLAAALGELGEVKHIVSPNYEHTKYAKQWIERYPGARSYACPGLKEKEPQVPYTTELGGGGGEP--PEWLGEVQTTCLTYERNPFNGKPFFNEVVFFFKPEKLLITSDLFWNYPN-QAPGGTKLWKFGMDRVYLPFYRRFMISDKGEYDEATRRIFKEWNFEAILPCHGDFVPSNGKEV 266          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Predicted (protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MGP7_MICPC)

HSP 1 Score: 280 bits (716), Expect = 2.250e-91
Identity = 127/236 (53.81%), Postives = 160/236 (67.80%), Query Frame = 1
Query:   40 RRELTWSNPTGDDMVQVL-GDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLPEWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPR-KEVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVRIGA 741
            R E TWSNPTG+ +  V+ G VW AERPF WN IDVGG+MAVV+L DG+LWVHSP+DLD+  + A+ +LG V H+VSPNYEHVK+A QW EAYP A  Y CPG+  + P + +  EVG   ED +   WGGE      DCE NPFT  PFFNEVVF H  +     +D++WNYP   +VP GTR+WK+GMD+VYLPF++  MV D E FA    ++L W  +  +PCHG  +  GA
Sbjct:   46 RYEKTWSNPTGNVLTDVVPGVVWAAERPFTWNAIDVGGKMAVVRLRDGALWVHSPIDLDDATRAAIDALGSVKHVVSPNYEHVKWAAQWKEAYPDATLYGCPGMRAKKPGIPWDAEVG---EDGAPEAWGGEFDVALFDCEVNPFTSTPFFNEVVFCHAASGVAFVTDVFWNYPGGDDVPPGTRLWKFGMDRVYLPFYRAAMVRDREKFARAREKVLSWDFDAALPCHGSFIPRGA 278          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Hypothetical (protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DC47_MICPS)

HSP 1 Score: 279 bits (713), Expect = 1.360e-90
Identity = 126/247 (51.01%), Postives = 172/247 (69.64%), Query Frame = 1
Query:   46 ELTWSNPTGDDMVQVL-GDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDE-SLPEWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRKEV----------PFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVRIGAPQV 750
            + TWSNPTG  +  V+ G VW AERPF WN IDVGG+M VVKL DG+LWVHSPVDLD P K+A+ +LGPV H+VSPNYEHVK+A QW EAYP A  + CPG+ +++P + +  E+   ++ E +  +   E  A + DCETNPFT KPFFNE VF+H+ ++ L  +DL+WNYP  +V          P GT+ WK+GMD+VYLPF+++ MV D +AFA++ + +L    + ++PCHG +V  GA +V
Sbjct:   61 DKTWSNPTGQVLTPVVDGVVWAAERPFTWNTIDVGGKMGVVKLEDGALWVHSPVDLDAPTKKAVDALGPVRHVVSPNYEHVKWAAQWKEAYPDATLWGCPGMKQKYPTIPWDEEL---VDGEGNFGDARFEFTATWFDCETNPFTSKPFFNETVFVHKKSRVLFVTDLFWNYPETDVGEGEAHSVQIPLGTKAWKFGMDRVYLPFYRKAMVRDAKAFAARRDALLQTAFDKVLPCHGEVVLSGATKV 304          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Hypothetical (protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IGZ2_MICPS)

HSP 1 Score: 276 bits (707), Expect = 5.210e-90
Identity = 122/231 (52.81%), Postives = 159/231 (68.83%), Query Frame = 1
Query:   46 ELTWSNPTGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLG-PVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLPEWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPR--KEVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIV 729
            +  WSNP+G  +  +   VW AERPFVW GIDVGG+M VVK+ DGSLWVHSPVDLD+ L+ AL  +G  V H+VSPN+EHVKYA QW  A+P AV + CPG+ +  P + F REVG  + D    EW GE    F DCE NPF G PFFNEVVF HRP+  ++ +DL+WNY    + +P  TR WK+GMD+VYLPF++ FMV D   FA ++ +++ W  ++++PCHG  V
Sbjct:   45 DYDWSNPSGSVLTPLREKVWAAERPFVWQGIDVGGKMGVVKMRDGSLWVHSPVDLDDDLRAALTEIGGDVKHVVSPNFEHVKYAAQWKAAFPDAVLWGCPGMIDEKPLIPFDREVG--VGDACPEEWNGEFELAFFDCEVNPFVGAPFFNEVVFHHRPSGVVLVTDLFWNYGGGGQALPAATRAWKFGMDRVYLPFYRAFMVRDRARFAERIGRVMAWEFDSLLPCHGTFV 273          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F7M5_9ALVE)

HSP 1 Score: 278 bits (710), Expect = 7.790e-90
Identity = 127/233 (54.51%), Postives = 158/233 (67.81%), Query Frame = 1
Query:   46 ELTWSNPTGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIED-ESLP-EWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRK--EVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVR 732
            + TWSN  G+ + +V   +W A+RPF+WN IDVGG+MAVV+L DG+LWVHSPV  D  L EAL   G + H+VSPN+EHVK+A  W   +PS+V+  CPGLAER P VGF + V    E  E  P EW GE   CF+D E NPFT +PFFNEV+F H+P+KTLI SD  WNYP +   VP  TRVWK GMDK+Y PF++ FM+ D   F     +I  WGVE I+PCHG +V 
Sbjct:   82 QKTWSNQKGEVLCRVTDSIWYADRPFIWNKIDVGGKMAVVRLRDGTLWVHSPVAFDRTLAEALGKAGRIKHLVSPNFEHVKFAGDWKREFPSSVASGCPGLAEREPGVGFDQTVPVVGEGGEGAPSEWLGEFEVCFLDFEHNPFTRRPFFNEVIFFHKPSKTLIVSDALWNYPGQPERVPLLTRVWKLGMDKLYFPFYENFMIKDEAGFERARRKIFSWGVERIIPCHGDVVE 314          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812Q2U2_9DINO)

HSP 1 Score: 277 bits (708), Expect = 9.400e-90
Identity = 124/233 (53.22%), Postives = 164/233 (70.39%), Query Frame = 1
Query:   52 TWSNPTGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLP-EWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRKEVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVRIGAPQ 747
            TWSNPTG  +  +  D+W AERPF+WN IDVGG+MAVV+L DG LWVHSPVDLDE L++ L  LGPV HIVSPN+EHVK+A QW  A+P A  +  PG+ ++ P++ F  E+ +   D S P EWGG +L CF DCE  P  G PFFNEV+F H P+ TL+ +D++WNYP   +P G+ +WK+ MDK+YLPF+KRFMVT   +  + ++ + +W  E ++PCHG  V  GA Q
Sbjct:   80 TWSNPTGSVLTALNTDLWVAERPFIWNSIDVGGKMAVVRLPDGGLWVHSPVDLDEELRKGLEQLGPVRHIVSPNFEHVKWAAQWKGAFPDATLWGTPGMKDKFPKIPFDVELPS---DSSAPAEWGGALLMCFADCERTPLLGTPFFNEVIFYHVPSDTLMCTDIFWNYP-SGLPSGSALWKFLMDKIYLPFYKRFMVTSPGSLNAVLDAVAEWKPEKLLPCHGRYVPSGAWQ 308          
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG26_9STRA)

HSP 1 Score: 273 bits (698), Expect = 5.860e-89
Identity = 119/233 (51.07%), Postives = 163/233 (69.96%), Query Frame = 1
Query:   43 RELTWSNPTGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLPEWGGEILACFMDCETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRKEVPFGTRVWKWGMDKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVRIGA 741
            R+ TWSNP G D+  +  +VW AERPF+WN IDVGGRM V+KL DGSLWVHSPV+LD  L++ LA LGPV H+VSPNYEHVKYA+QW+ AYP A ++ACPGL ++ P++G+ R +G + +  +  +W  EI   +++CE  P   + FF+EVVF H P++ L+ +D+YWNYPR   P  T++WK+GMD VYLP ++  +V D   F   + +I  W   T+VPCHG +V   A
Sbjct:   20 RDKTWSNPKGLDLTPIKHNVWGAERPFIWNTIDVGGRMTVIKLEDGSLWVHSPVELDPALQQTLAELGPVRHVVSPNYEHVKYAQQWIHAYPDATAWACPGLKDKKPDIGYDRTIGTTADAPA--DWPREIGFVWLNCERVPVLNQAFFSEVVFHHEPSQCLLCTDVYWNYPRSAPP-KTQLWKFGMDVVYLPIYRNLLVADAREFDKLLARIDAWNFNTVVPCHGRVVMEAA 249          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7569.15729.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized7.720e-18494.78protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical9.150e-10057.76protein n=1 Tax=Eutreptiella gymnastica TaxID=7302... [more]
Uncharacterized2.330e-9856.36protein n=1 Tax=Klebsormidium nitens TaxID=105231 ... [more]
Uncharacterized4.600e-9554.40protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 Re... [more]
Predicted2.250e-9153.81protein n=2 Tax=Micromonas pusilla TaxID=38833 Rep... [more]
Hypothetical1.360e-9051.01protein n=1 Tax=Micromonas pusilla TaxID=38833 Rep... [more]
Hypothetical5.210e-9052.81protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S... [more]
Uncharacterized7.790e-9054.51protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169... [more]
Hypothetical9.400e-9053.22protein n=1 Tax=Symbiodinium natans TaxID=878477 R... [more]
Uncharacterized5.860e-8951.07protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7569contigE_fasciculatus_S2_contig7569:2787..6699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score512.3
Seed ortholog evalue1.3e-142
Seed eggNOG ortholog2880.D7FXK8
Model size762
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Domain of unknown function (DUF4336)
EggNOG OGs2BIUM@1,2RZ4V@2759
Cds size759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7569.15729.1prot_E_fasciculatus_S2_contig7569.15729.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7569 2790..6699 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842417.9219189-UTR-E_fasciculatus_S2_contig7569:2786..27891696842417.9219189-UTR-E_fasciculatus_S2_contig7569:2786..2789Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7569 2787..2789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842417.9329073-CDS-E_fasciculatus_S2_contig7569:2789..29311696842417.9329073-CDS-E_fasciculatus_S2_contig7569:2789..2931Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7569 2790..2931 +
1696842417.9421043-CDS-E_fasciculatus_S2_contig7569:4106..42481696842417.9421043-CDS-E_fasciculatus_S2_contig7569:4106..4248Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7569 4107..4248 +
1696842417.952355-CDS-E_fasciculatus_S2_contig7569:4491..46231696842417.952355-CDS-E_fasciculatus_S2_contig7569:4491..4623Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7569 4492..4623 +
1696842417.970485-CDS-E_fasciculatus_S2_contig7569:5406..54821696842417.970485-CDS-E_fasciculatus_S2_contig7569:5406..5482Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7569 5407..5482 +
1696842417.9883494-CDS-E_fasciculatus_S2_contig7569:5839..59531696842417.9883494-CDS-E_fasciculatus_S2_contig7569:5839..5953Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7569 5840..5953 +
1696842417.9990764-CDS-E_fasciculatus_S2_contig7569:6546..66991696842417.9990764-CDS-E_fasciculatus_S2_contig7569:6546..6699Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7569 6547..6699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7569.15729.1

>prot_E_fasciculatus_S2_contig7569.15729.1 ID=prot_E_fasciculatus_S2_contig7569.15729.1|Name=mRNA_E_fasciculatus_S2_contig7569.15729.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=253bp
MSGGGGAITTGGRRELTWSNPTGDDMVQVLGDVWCAERPFVWNGIDVGGR
MAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQW
VEAYPSAVSYACPGLAERHPEVGFTREVGASIEDESLPEWGGEILACFMD
CETNPFTGKPFFNEVVFLHRPTKTLITSDLYWNYPRKEVPFGTRVWKWGM
DKVYLPFFKRFMVTDGEAFASKVNQILDWGVETIVPCHGGIVRIGAPQVC
CL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7569:2787..6699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7569.15729.1 ID=mRNA_E_fasciculatus_S2_contig7569.15729.1|Name=mRNA_E_fasciculatus_S2_contig7569.15729.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3913bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7569:2787..6699+ (Ectocarpus fasciculatus EfasUO2)
TTGATGTCCGGCGGCGGTGGAGCTATCACTACGGGGGGCAGGCGCGAATT GACATGGTCTAATCCGACGGGCGACGACATGGTGCAAGTGCTGGGCGACG TTTGGTGCGCGGAGCGCCCGTTTGTGTGGAACGGCATCGACGTCGGTGGG TGCAGCCGCTATCAACATCTTGATCAACATCCTCGTTTTTTCGAAAAAAA TCTTCCTCGTGCAAACCAAGTTGGCTGCTGTCGTTGCTCGTGAAGTTGCT ACGAATGCTGTGCCACGCTTGCTGTGTACTATTTAGCAGCCATCCCCGAG GGGTAGCATTTGCGGCGAAAACAAGCAGCCGACCTCGGCGGTAGCGATGG CGGTAACGCGAGCCTTATACGCAACCCTACACCCTGTTGTCATGTGCCCA AACACTCGGTGTACCCCCCTGCTGACAGTCCCGCCCATGGGGAGGCCCAC ACCGCCGAAACCTGATCGAAGAAGGCTACACAGCAGTCCGTATCAGTTAG AAATAATCACATTGGCTACCGAATGTCTTTCTTTCCAGGGCATCACGAAC CCACCACCTTTCCACCAACCCAGGACCCAGGACTCATCCCCCTCAACGTC AACCTAGCACCTAAAAGCGAAACCACGGTCGACCACAGCAGTAGAAGTCA CAGCATCAACCAACCACGCCAACATACACATCATGTCATCCACTGGTGTT GGGTTGCGGTTCGAGCTCAGGGTTTGGTGCCCCAGCCGTCGCCGAGAGCA CAGCGTTTCGAATAGGTAGTATTGGCAGCAATCGCCTGTGTTGAAAGGGT GTGTGGTGTGTGGCCGGCTGCGTCAGGTGTGCACCCACAAACCGTAGGTA GTGAGGTCGAGCTTCTGGATGGATCGATCGCGCAAGACTGGCTCTGCCCA CGCACACACCCAACTCTCTCTCCTCCCCTTGCTCTTCCTCTCTTCTCACT TGGGATGTCGGACAAGAATCTAACCTAGGCATCATCTTCCATCAACAGCA ATTCAGAGCAAATGCCTGAAACTGCCCGTGGGGAAGAGTCCGGGGCGTTT CAAGGTTGACACATGTCATCTGGCAGAAGGGGAGGGTGTGTGAGGGTTTT CCCACAACATTTGGCCGAGTAAAAGTGCTACCCCCTAAGCACTTGTTTTT TGAGAGGGCGGGAAATTTCCAGGAGGGTCAACTCCACTGCGTCTGTTCTG TACACACACGTTGTTTAGAGGTTAAGCGGCCAGCTATGTCAAACAAACGA GCCCGCCCCCGCACACCCTTCCTTCTCGTCTTCTGTATCTCTCGTGCCCC CATTGTTTGGTGTTGGGCAGGGGGCCGCATGGCGGTGGTGAAGCTCTCCG ACGGCTCTCTCTGGGTGCACTCCCCGGTGGACCTCGACGAGCCGCTCAAG GAAGCCCTTGCCAGCCTTGGGCCTGTGGGGCACATCGTGTCACCCAACTA CGAACACGTCAAGTGAGCTACTTTGCAGCTACATCTCAGTACACCTTCTC CGGCTCTTTTCTTTTTCACCTGCCATGTAGTCGCATGAGCAGCAAGCACG CCGCCCGCACACACAAAATGCACATATTCTGGGATCTAGAGGCGATGCTG TCTCGAAAACAGCCGCAGTTTCTGGTGCAGGAGAGGAGCTTTGAACTATG CGGATGTTGTCATCTTTTCTTTCGCCGGCCTGTGACCGTTCGTGTGCGGG AGCAGGTACGCGAAACAGTGGGTGGAGGCCTATCCGTCCGCTGTATCGTA CGCGTGCCCCGGGCTGGCGGAGCGGCACCCGGAAGTCGGTTTCACCAGGG AGGTGGGGGCGAGCATCGAAGACGAAAGCCTGCCGGAGTGAGTGCCGACA CAAGCATGCATGGGCGCCATTGCACAATGTCTGGTTAGGTTTGGGACTGT GTCAGATTCACCCCGCCGGAGATTCTTCCGGCCGGGTGTTGGCCTAGATT ACCGTAGGTTACACAAGATACCCCCTTGGACCGATTTCCAAACTCGACTG TACTCCACAACGAAGAGTGTGCATGTGACGCGTTTTCGGAAAGCTCTCGG CGAGACTGTTCCAACCCCGCCATTTTCGGGGCCGCCGCTGTTTCTGCTTT GGAGTTGTCGAGCTTTGAAAATCGTGTCGTATCTTGTCGTGTGTCACCTG CGGTAGCAATGTAGAGCCATTCATCGCAACGAAATTCAGTAACCGCTGAT GACACCTGGTGTCGCCGACTGGCCAGCGCGCATGTACGGCAGGTACGCAG CTAGCTCTCTACAACACTCACCCATGTTTCTAGCCCTCTCGCGGGAGGTT GAGCCTGGTGTGTTTACTCGACGTCGCGTAGACAACGCGGAATAAATCTG GGCCTGAAAAAGCGTAGAGCACCGCGTCACGGCAACAGTAGTTGGCGTCA GAGGCAGGATATGCGTCTTTGTCGTCGTGGTGGTGGTGGTCATCGTCGTT GTCAACAGGAGGGCGCGGCGAAAAGCGGTGGCCGGGTGGTTCGAAAGAAC GGTGGGGGCGAGCCTCTGCTTGCAAGGAAGCCCTCCCGCAGCGGTAGCAC TGGCTTATCACCACAACAAATTGGCTAACGTTTTGTTGTGGCGCCGCTGC TTCCTGCGGCTGCCCGGCAGGTGGGGGGGCGAGATCCTGGCGTGCTTCAT GGACTGCGAGACCAACCCCTTCACGGGCAAGCCTTTTTTCAATGAGGTGG GACGAAGTTGAACCCGTCGTTGTGATGATGTGCCTACAGCAGTCCCGGCA TTTGGTAGGCTGATTTTAAGGGGTCGAAATGAATAAAAATACGCAAACCA AAGAATTGAATGGGACCCAAATGTTCGTGAGAAAGCTCTCGCCAGCAGCG TTCGAACGAGCGCATCGGAAGCTGTTGGTTCGTGTTGTGAAAAATGGTTA CGGCCCTATTTGTAGGCGCTACGAAAGTTGGTCGGACCTATCCCAAGTGC CTGCCGCTGACAGAACAGAGACGTATCGGTTCGTTCCTGCCATGCCGTGG TCGCCCAAAACTGCAGTTCTAACCCATGGCTCTTTTCGTGCGGCCTGTAC CAGGTTGTGTTCTTGCACCGTCCGACCAAAACTCTGATAACCTCGGACTT GTACTGGAACTACCCCCGGAAAGAGGTGCCTTTCGGCACGAGAGTCTGGA AGTGGGGCATGGACAAGGTGCGATTTTTTTCCCATCACATGAGTTTATTG CCTCATTTTGTTCGCTCTTTGTGATTTAAGATTGTTGGCCATGCTGTTGC AGGCCATGTTGTCGTTATGGATGATAGTTGATCGTTGATAGTTGATAGTT GATAGTTGGTGGTGTTGTTGGTTGTTGATTGTTGATTGCTGCTATTGTTG TTGTTTGCTGCCTTGCCGTCTCTGCACGATTACCCTCTTCGGTACACCTT CTTGTCCCTGGACGAGTGGACATCTCCACTCGCATGCTTCCGAAGAATCT TGGGGGTTCGGAGGGAATTATTCTGCCCTCGCAACCGCTCTGTCTGCCAC CTCGACGTCGGTCCTCAGAATCACCATGATGCAAGACATGTCTATAAGAC CAGCTCTTGTTTAGAGTTGGAATTCGATGCCAAATTTCATGCATCCTCAG CGCTTGCTGTTTCCACTGCTGCACTGCTCTGGGTTTCTGCGGCAGCTTGT TCATTCCCTTTCCGGCAAACGCACCCTTGCCCGTTTCTGAGTGCCTGGAG ACTGATCGTCTCTGTCCGCTTGTGCTTGCTCGGCGACTGACCATCATCGA TGCATGTAAGGTTTATCTGCCTTTTTTCAAGAGGTTCATGGTGACGGACG GCGAAGCTTTCGCCTCCAAAGTTAACCAGATCCTAGACTGGGGGGTCGAG ACCATCGTCCCCTGCCACGGGGGTATTGTGCGAATCGGGGCACCCCAGGT GTGCTGCTTGTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7569:2787..6699+

>mRNA_E_fasciculatus_S2_contig7569.15729.1 ID=mRNA_E_fasciculatus_S2_contig7569.15729.1|Name=mRNA_E_fasciculatus_S2_contig7569.15729.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=759bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7569:2787..6699+ (Ectocarpus fasciculatus EfasUO2)
ATGTCCGGCGGCGGTGGAGCTATCACTACGGGGGGCAGGCGCGAATTGAC
ATGGTCTAATCCGACGGGCGACGACATGGTGCAAGTGCTGGGCGACGTTT
GGTGCGCGGAGCGCCCGTTTGTGTGGAACGGCATCGACGTCGGGGGCCGC
ATGGCGGTGGTGAAGCTCTCCGACGGCTCTCTCTGGGTGCACTCCCCGGT
GGACCTCGACGAGCCGCTCAAGGAAGCCCTTGCCAGCCTTGGGCCTGTGG
GGCACATCGTGTCACCCAACTACGAACACGTCAAGTACGCGAAACAGTGG
GTGGAGGCCTATCCGTCCGCTGTATCGTACGCGTGCCCCGGGCTGGCGGA
GCGGCACCCGGAAGTCGGTTTCACCAGGGAGGTGGGGGCGAGCATCGAAG
ACGAAAGCCTGCCGGAGTGGGGGGGCGAGATCCTGGCGTGCTTCATGGAC
TGCGAGACCAACCCCTTCACGGGCAAGCCTTTTTTCAATGAGGTTGTGTT
CTTGCACCGTCCGACCAAAACTCTGATAACCTCGGACTTGTACTGGAACT
ACCCCCGGAAAGAGGTGCCTTTCGGCACGAGAGTCTGGAAGTGGGGCATG
GACAAGGTTTATCTGCCTTTTTTCAAGAGGTTCATGGTGACGGACGGCGA
AGCTTTCGCCTCCAAAGTTAACCAGATCCTAGACTGGGGGGTCGAGACCA
TCGTCCCCTGCCACGGGGGTATTGTGCGAATCGGGGCACCCCAGGTGTGC
TGCTTGTAA
back to top