mRNA_E_fasciculatus_S2_contig7504.15671.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7504.15671.1
Unique NamemRNA_E_fasciculatus_S2_contig7504.15671.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: PEPD_MOUSE (Xaa-Pro dipeptidase (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L6_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 1.890e-97
Identity = 153/164 (93.29%), Postives = 156/164 (95.12%), Query Frame = 1
Query:    1 MPAAAQMTTSSTSXXXXXX--PPLIPLLPETIAAAATKRSKKNPRVPSEMPALELHPTVGEYPVDYTMHAENRAKVIDRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNILPPKHFQ 486
            MPAAAQMTTSS  XXXXXX  PPLIPLLPETI A A KRSKKNPRVPSEMPALELHPTVGEYPVDYTMHAENR KVI+RLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREP+CLATIDLETGKATLFIPRLPAEYATWMG+ILPPKHFQ
Sbjct:    1 MPAAAQMTTSSXXXXXXXXXXPPLIPLLPETIGATA-KRSKKNPRVPSEMPALELHPTVGEYPVDYTMHAENRGKVINRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPNCLATIDLETGKATLFIPRLPAEYATWMGDILPPKHFQ 163          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: AMP_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB9_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 3.210e-93
Identity = 155/164 (94.51%), Postives = 156/164 (95.12%), Query Frame = 1
Query:    1 MPAAAQMTTSSTSXXXXXX--PPLIPLLPETIAAAATKRSKKNPRVPSEMPALELHPTVGEYPVDYTMHAENRAKVIDRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNILPPKHFQ 486
            MPAAAQMTTSS  XXXXXX  PPLIPLLPETI AAA KRSKKNPRVPSEMPALELHPTVGEYPVDYTMHAENRAKVI+RLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPA YATWMG ILPPKHFQ
Sbjct:    1 MPAAAQMTTSSXXXXXXXXXXPPLIPLLPETIGAAA-KRSKKNPRVPSEMPALELHPTVGEYPVDYTMHAENRAKVINRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAVYATWMGEILPPKHFQ 163          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA66_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.140e-38
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 1
Query:  184 VDYTMHAENRAKVIDRLRETDG--VAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNILPPKHFQ 486
            +D+++HA NRA V+D L+   G  V  + V+L++GG+A  RD+TDHEP+FRQES FHYLFGVREPDC   ID+ TG ATLFIPRLP  YATWMG+ILPP HFQ
Sbjct:   25 IDFSLHARNRAAVVDNLKRFGGATVPEKAVILVQGGVAETRDDTDHEPLFRQESNFHYLFGVREPDCFGAIDVATGAATLFIPRLPDVYATWMGDILPPAHFQ 127          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H3N2_HEMAN)

HSP 1 Score: 113 bits (283), Expect = 4.230e-29
Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  184 VDYTMHAENRAKVIDRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNI 465
            V  +MHA+NR +++  + +    + +GV LL GG +  RD++DHE +FRQES FHYLFGV EPDCL  +D+  G ATLFIPRLPA+YA WMG I
Sbjct:   16 VPRSMHAQNRQRLVSLMNKQ---SCKGVALLLGGTSKTRDDSDHEEIFRQESNFHYLFGVAEPDCLGAVDVRNGAATLFIPRLPADYAMWMGPI 106          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LQA6_ALECA)

HSP 1 Score: 112 bits (279), Expect = 1.140e-28
Identity = 63/125 (50.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   91 AAAATKRSKKNPRVPSEMPALELHPTVGEYPVDYT--MHAENRAKVIDRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMG 459
            A AA   + + P +P   PA    P     P  ++  MH  NR  ++ R RE    A R VLL  GG    R +TDHE VFRQESTFHYLFGV+EPD LA I  ETG+ TLF+PRLP E A WMG
Sbjct:   20 ALAAMLAAGRRPDLPGPQPAQPRAP-----PPSFSARMHRLNREALLQRFREARPAAGRAVLLFAGGPEPARHDTDHEDVFRQESTFHYLFGVQEPDYLAAISAETGETTLFMPRLPEEDAVWMG 139          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: Metallopeptidase (M24 family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWQ9_KLENI)

HSP 1 Score: 119 bits (299), Expect = 1.210e-28
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 1
Query:   94 AAATKRSKKNPRVPSEMPALELHPTVGEYPVDYTMHAENRAKVIDRLRETDGVAPR--GVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNILPPKHFQ 486
            A A +  KK  + P   P  E      +Y V  ++HAENRAK++  L ET   A +  GV+LL+GG    R +TDHEP+FRQES F YLFGV E      +D+ TGK+ LF PRLP+EYA WMG I PP+HF+
Sbjct:   11 AKAMETDKKLIKKPVNQPRFE------KYVVPMSLHAENRAKLVKALGETLSAAGKENGVVLLQGGEQQTRYDTDHEPLFRQESYFAYLFGVTEAGFYGAVDVATGKSILFAPRLPSEYAIWMGKIQPPQHFK 137          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9U7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.070e-28
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  142 MPALELHPTVG----EYPVDYTMHAENRAKVIDRLRETDGVAPRG-VLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNILPPKHF 483
            M AL+L    G     + +  TM++ENR ++++R ++    A  G VLL +GG++  R++TDHE +FRQES F +LFGV EPDC ATI++ +G+ TLF+PR P EYA WMG I PP HF
Sbjct:   13 MAALDLPGAFGVHMPPFRIPRTMYSENRQRLVERFQQDQQGAVEGAVLLFKGGVSLTRNDTDHELIFRQESFFSHLFGVLEPDCYATIEVPSGRTTLFVPRFPQEYAVWMGPIHPPSHF 131          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YSS7_9CRYP)

HSP 1 Score: 118 bits (296), Expect = 3.370e-28
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  184 VDYTMHAENRAKVIDRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNILPPKHFQ 486
            V  +MHA+NR +++  +   D  + +GV LL GG    RD++DHE +FRQES FHYLFGV EPDCL  ID+  G ATLFIPRLPA+YA WMG I  P+ F+
Sbjct:   37 VPRSMHAQNRQRLVSLM---DRKSCKGVALLLGGTGKTRDDSDHEEIFRQESNFHYLFGVAEPDCLGAIDVRDGSATLFIPRLPADYAMWMGPIASPEDFK 134          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: Hypothetical (protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EV76_CHRCT)

HSP 1 Score: 117 bits (294), Expect = 8.240e-28
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  172 GEYPVDYTMHAENRAKVID----RLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNI 465
            G +  D  +H E R K  +    +LR    + P G+++LRGG++ NRD+TDHE +FRQES FHYLFGV+EPD    +++ +G++TLFIPRLPAEYA WMG+I
Sbjct:   52 GTFVADAALHREARRKAANALAAKLRTNGNIVPEGLIVLRGGVSRNRDDTDHEELFRQESYFHYLFGVKEPDWWGMVEVPSGRSTLFIPRLPAEYAVWMGHI 153          
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Match: AMP_N (domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTW8_CHABU)

HSP 1 Score: 112 bits (279), Expect = 1.740e-27
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  148 ALELHPTV-----GEYPVDYTMHAENR----AKVIDRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYATWMGNILPPKHFQ 486
            A E  P V     G +PV  +MHA NR     K++ R++E+ G     V+LL GG++  R  TDHEP+FRQES F YLFGV+EP     +DL TGK  LF+P LP +YA WMG I  P+HF+
Sbjct:   18 ATEARPGVFWMGPGTHPVPMSMHAGNRKRLVTKMLKRIQESGGSPRNSVVLLEGGVSETRYCTDHEPLFRQESYFSYLFGVKEPGFYGALDLATGKCFLFMPLLPKDYAVWMGTIHGPEHFK 139          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7504.15671.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PEPD_MOUSE1.890e-9793.29Xaa-Pro dipeptidase (ISS) n=1 Tax=Ectocarpus silic... [more]
AMP_N3.210e-9394.51domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical3.140e-3864.08protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486... [more]
Hypothetical4.230e-2955.32protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Hypothetical1.140e-2850.40protein (Fragment) n=1 Tax=Alexandrium catenella T... [more]
Metallopeptidase1.210e-2848.87M24 family protein n=1 Tax=Klebsormidium nitens Ta... [more]
Hypothetical3.070e-2848.74protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical3.370e-2855.45protein n=1 Tax=Hemiselmis tepida TaxID=464990 Rep... [more]
Hypothetical8.240e-2851.96protein n=1 Tax=Chrysotila carterae TaxID=13221 Re... [more]
AMP_N1.740e-2748.36domain-containing protein n=1 Tax=Chara braunii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7504contigE_fasciculatus_S2_contig7504:5213..5698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score291.2
Seed ortholog evalue3e-76
Seed eggNOG ortholog2880.D7G1L6
Preferred namePEPP
Model size486
KEGG koko:K14213
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0016787,GO:0016805,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Exons1
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0006@1,KOG2737@2759
EC3.4.13.9
Cds size486
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842412.5695076-CDS-E_fasciculatus_S2_contig7504:5212..56981696842412.5695076-CDS-E_fasciculatus_S2_contig7504:5212..5698Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7504 5213..5698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7504.15671.1prot_E_fasciculatus_S2_contig7504.15671.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7504 5213..5698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7504.15671.1

>prot_E_fasciculatus_S2_contig7504.15671.1 ID=prot_E_fasciculatus_S2_contig7504.15671.1|Name=mRNA_E_fasciculatus_S2_contig7504.15671.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=162bp
MPAAAQMTTSSTSTSPSSAPPLIPLLPETIAAAATKRSKKNPRVPSEMPA
LELHPTVGEYPVDYTMHAENRAKVIDRLRETDGVAPRGVLLLRGGLAANR
DETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAEYAT
WMGNILPPKHFQ
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mRNA from alignment at E_fasciculatus_S2_contig7504:5213..5698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7504.15671.1 ID=mRNA_E_fasciculatus_S2_contig7504.15671.1|Name=mRNA_E_fasciculatus_S2_contig7504.15671.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7504:5213..5698+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGGCAGCAGCCCAGATGACGACGTCCTCAACGTCAACTTCACCCTC CTCAGCTCCTCCCCTGATCCCTCTCCTGCCCGAGACCATCGCCGCAGCCG CCACCAAGAGGTCGAAGAAGAACCCCAGGGTGCCCTCGGAGATGCCCGCC CTAGAGCTGCACCCGACGGTGGGCGAGTACCCGGTGGACTACACCATGCA CGCCGAGAACCGCGCCAAGGTCATCGACAGATTGCGCGAAACAGACGGAG TTGCGCCGCGCGGGGTGTTGCTGCTCCGCGGCGGGCTTGCAGCGAACCGA GACGAGACGGACCACGAGCCGGTGTTCCGGCAGGAGTCCACCTTCCACTA CCTCTTCGGGGTGAGGGAGCCCGACTGCCTCGCGACGATCGACCTAGAGA CGGGGAAGGCGACTCTCTTTATCCCGAGGCTTCCGGCGGAGTACGCGACG TGGATGGGCAACATCCTCCCCCCCAAGCACTTCCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7504:5213..5698+

>mRNA_E_fasciculatus_S2_contig7504.15671.1 ID=mRNA_E_fasciculatus_S2_contig7504.15671.1|Name=mRNA_E_fasciculatus_S2_contig7504.15671.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7504:5213..5698+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGGCAGCAGCCCAGATGACGACGTCCTCAACGTCAACTTCACCCTC
CTCAGCTCCTCCCCTGATCCCTCTCCTGCCCGAGACCATCGCCGCAGCCG
CCACCAAGAGGTCGAAGAAGAACCCCAGGGTGCCCTCGGAGATGCCCGCC
CTAGAGCTGCACCCGACGGTGGGCGAGTACCCGGTGGACTACACCATGCA
CGCCGAGAACCGCGCCAAGGTCATCGACAGATTGCGCGAAACAGACGGAG
TTGCGCCGCGCGGGGTGTTGCTGCTCCGCGGCGGGCTTGCAGCGAACCGA
GACGAGACGGACCACGAGCCGGTGTTCCGGCAGGAGTCCACCTTCCACTA
CCTCTTCGGGGTGAGGGAGCCCGACTGCCTCGCGACGATCGACCTAGAGA
CGGGGAAGGCGACTCTCTTTATCCCGAGGCTTCCGGCGGAGTACGCGACG
TGGATGGGCAACATCCTCCCCCCCAAGCACTTCCAG
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