mRNA_E_fasciculatus_S2_contig7446.15621.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Alb3 (homolog, thylakoidal inner membrane insertase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC7_ECTSI) HSP 1 Score: 582 bits (1501), Expect = 2.780e-207 Identity = 309/312 (99.04%), Postives = 310/312 (99.36%), Query Frame = 1
Query: 1 MGRPLTALVAACAMANAGTVSAFAPPGLAVSARSRFVPANSWTSRSSAPAARPSASGARGLQAMVDPGMMHGVDPAWLHQVLTGIADGDVAAAVAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPVDESQAASQN 936
MGRPLTALVAACAMANAGTVSAFAPPGLAVSARSRFV ANSWTSRSSAPAARPSASGARGLQAMVDPGMMHGVDPAWLHQVLTGIADGDVAAAVAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIP+ILVITQSISTRIMQP KDPSQPVDESQAASQN
Sbjct: 1 MGRPLTALVAACAMANAGTVSAFAPPGLAVSARSRFVAANSWTSRSSAPAARPSASGARGLQAMVDPGMMHGVDPAWLHQVLTGIADGDVAAAVAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPIILVITQSISTRIMQPAKDPSQPVDESQAASQN 312
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Alb3-like (protein, thylakoidal inner membrane insertase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS0_9STRA) HSP 1 Score: 293 bits (751), Expect = 7.600e-94 Identity = 172/308 (55.84%), Postives = 208/308 (67.53%), Query Frame = 1
Query: 1 MGRPLTALVAACAMANAGTVSAFAPPGLAVSARSRFVPANSWTSRSSAPAARPSASGARGLQAMVDPGMMHGVDPAWLHQVLTGIADGDVAAAVAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPVDESQA 924
M R L + AC +A+A AP G+ VS V + SR S PAA SG GL+A+ D G+D LHQV +G+AD AA A+ AA L TE AIT LHD L GV +YG +II FTLF+KG+TFPLTYQQL+STTKMQTL PKVK++Q R ANNPEAAN+A+ LY+ E VNPL+GCLP+LAQIPIFISLYR+LLNLAKENKL E FLW+PSLEGP F +PPTE ++WIK W +G P LGWHDT+ Y++IP+ILVITQSIS +++ PPK D SQA
Sbjct: 1 MARRLGLVGLAC-LASAAAFVINAPAGIVVSNGFGRVARRTVQSRGS-PAAT---SGVGGLRALAD----GGIDFTVLHQVFSGLAD--ATAATADAAADAAANNGGVFAGLVTATEAAITMLHDALKGAGVEQSYGYAIIGFTLFIKGVTFPLTYQQLASTTKMQTLQPKVKDIQKRLANNPEAANKAIADLYKEEEVNPLSGCLPSLAQIPIFISLYRALLNLAKENKLDEGFLWLPSLEGPVFGAPPTESLNWIKTWENGVPALGWHDTLCYLSIPVILVITQSISQQLISPPKKEGAEADTSQA 297
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFB5_9STRA) HSP 1 Score: 242 bits (618), Expect = 3.050e-75 Identity = 122/230 (53.04%), Postives = 163/230 (70.87%), Query Frame = 1
Query: 217 VDPAWLHQVLTGIADGDVAAAVAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQP 906
+DP L + G+A AA VA E A G P+ L T AITGLHD+L +G+ + YG +II FTL +K +TFPL +QL ST KMQ + PK++E+Q ++ANNPE ANQ + QLYQ ++NPLAGCLP+LAQIPIFI+LYRS+LNL+K+N LTE FLW+PSLEGPT+ + + + W+ W DGAP LGWHDT+ ++TIP+ILV++Q IS +++Q D QP
Sbjct: 65 MDPLVLSHAVQGLAQD--AADVASEVAKSDQGG-GPLGPLIAGTSFAITGLHDLLKGLGLQNPYGYAIILFTLLIKAVTFPLNAKQLESTGKMQAINPKIREIQTKFANNPEKANQMIAQLYQQYDINPLAGCLPSLAQIPIFIALYRSILNLSKDNVLTEPFLWLPSLEGPTYGAEQKDALQWLTTWQDGAPMLGWHDTLCFLTIPVILVLSQKISQKVLQ--SDAQQP 289
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Membrane (insertion protein, OxaA/YidC n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5Y4_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.510e-69 Identity = 126/265 (47.55%), Postives = 168/265 (63.40%), Query Frame = 1
Query: 175 RGLQAMVDPG----MMHGVDPA---WLHQVLTGIADGDVAAAVAEEAAXXXXXGFHP--------------IQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQP 906
R L+A+VDPG ++H P+ WL Q L G+AD AAA A + A + G E AIT +H+ L G+ + YG+SII FT+ VK +T PL Y+Q+ STTKMQ + PK+KE+QA+Y ++P Q + QLY NVNPLAGCLPAL QIPIFISLYR+L NLA N+L E FLW+P+LEGPT+ + P + M+W+K W P LGWHDTIA++T+PLIL+++QSIS +I+QP + P
Sbjct: 79 RTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVAD--AAAATAPDTAGAVEGSKEMTGAAXXXXXXXGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDP 341
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Preprotein (translocase subunit YidC n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSD2_NANGC) HSP 1 Score: 231 bits (588), Expect = 9.700e-69 Identity = 126/265 (47.55%), Postives = 168/265 (63.40%), Query Frame = 1
Query: 175 RGLQAMVDPG----MMHGVDPA---WLHQVLTGIADGDVAAAVAEEAAXXXXXGFHP--------------IQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQP 906
R L+A+VDPG ++H P+ WL Q L G+AD AAA A + A + G E AIT +H+ L G+ + YG+SII FT+ VK +T PL Y+Q+ STTKMQ + PK+KE+QA+Y ++P Q + QLY NVNPLAGCLPAL QIPIFISLYR+L NLA N+L E FLW+P+LEGPT+ + P + M+W+K W P LGWHDTIA++T+PLIL+++QSIS +I+QP + P
Sbjct: 41 RTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVAD--AAAATAADTAGAVEGSKEMTGAAXXXXXXNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDP 303
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9H4_9STRA) HSP 1 Score: 233 bits (593), Expect = 2.980e-68 Identity = 126/258 (48.84%), Postives = 164/258 (63.57%), Query Frame = 1
Query: 175 RGLQAMVDPGMMHGV-------DPAWLHQVLTGIADGDVAAAVAEEAAXXXXXGFHPIQLLT--------------GVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQP 885
R L+A+VDPG + V AWL Q L G+AD AAA A +AA G E AIT +H+ L G+ + YG+SII FT+ VK +T PL Y+Q+ STTKMQ + PK+KE+QA+Y ++P Q + QLY NVNPLAGCLPAL QIPIFISLYR+L NLA N+L E FLW+P+LEGPT+ + P + M+W+K W P LGWHDTIA++T+PLIL+++QSIS +I+QP
Sbjct: 141 RTLKAVVDPGHVAEVVHTHLPSSSAWLLQTLQGVAD--AAAATAPDAAGAVEGSKEMTSXXXXXXXXXXGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFNPSLGWHDTIAFLTVPLILIVSQSISQQILQP 396
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMA5_HEMAN) HSP 1 Score: 218 bits (555), Expect = 4.490e-65 Identity = 141/330 (42.73%), Postives = 197/330 (59.70%), Query Frame = 1
Query: 22 LVAACAMANAGTVSAF-APPG-----LAVSARSRFVPANSWTSRSSAPAARPSASGARGLQAM-----------------VDPGMMHGVDPAWLHQVLTGIADGDVAAA------VAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPT-----FDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPK--DPSQ 903
+V ACA+ G+ SAF APP LA +ARS P + S P A GA GL+A+ +D ++ VD + +H + AD A A V EEA G + L+ GV+ +T LH + + +P A+G +I+ FT+FVK IT+PL Y+Q++ST MQ L PK+K +QARY ++P+ N+ QLY+ E VNPLAGC+PAL Q+PIFI+LYR LL LA ++KL ESFLWIPSLEGP + P + + W+ W DGAP LGW DT+AY+++P+ILV+TQ+IS +++QPP+ DP+Q
Sbjct: 29 VVLACAV---GSTSAFTAPPSAGGLRLAPTARSTLSPRS--VRLGSLPLAPTRTLGATGLRAIAEHADAANHFAFLLSTHMDADVLSKVDMSEVHNAVMHFADAAAATAKEAANTVTEEAKKEDDGGIFGL-LVKGVSTCLVT-LHSIFKAANLPGAWGWAIMTFTIFVKAITYPLNYKQMASTISMQKLQPKLKAIQARYKDDPQKQNEMTAQLYKDEEVNPLAGCIPALVQLPIFIALYRGLLELAMQDKLQESFLWIPSLEGPVGKYNPVTNLPEDGLGWLTKWVDGAPPLGWEDTLAYLSLPVILVVTQTISQKLLQPPQSDDPAQ 351
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYJ8_9STRA) HSP 1 Score: 216 bits (549), Expect = 5.040e-64 Identity = 120/250 (48.00%), Postives = 154/250 (61.60%), Query Frame = 1
Query: 172 ARGLQAMVDP-GMMHGVDPAWLHQVLTGIADGDV-------AAAVAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWI-KDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKD 894
AR L+ ++ P ++ +DPAWL V G+AD + AA A A GF GAI G+H L S+GVP AYG++II FT VK P+TY+Q+ S +MQ L PK KEL+ +Y N NQ +LY+ VNPLAGCLPALAQIPIFI+LYRSL+NLA + E FLW+PSL GP + W+ K+W DG P LGWHDTIA++TIP+IL++TQSIS R++ PP D
Sbjct: 4 ARALRMVLQPHDVVTHLDPAWLSHVFQGVADAAMTSLDATNAAVDATTDAAAKEPGF--FDKFVNTVMGAIEGVHSELVSLGVPGAYGLAIILFTAGVKLALLPVTYKQMESAQRMQALAPKAKELKDKYGKNKALLNQLTAKLYEDAEVNPLAGCLPALAQIPIFIALYRSLINLAGNSDFNEPFLWLPSLAGPLYGQ--ARGTDWLFKNWVDGVPALGWHDTIAFLTIPVILILTQSISQRLLTPPSD 249
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H5X8_9STRA) HSP 1 Score: 217 bits (553), Expect = 7.360e-64 Identity = 122/233 (52.36%), Postives = 155/233 (66.52%), Query Frame = 1
Query: 241 VLTGIAD------GDVAAA---VAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPS-AYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWI-KDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPP-KDPSQ 903
V TG AD G A+A V E AA G+ LT EG + +H+ L S G+ + A+G+SII TL +K TFPLT QL ST KMQ L P +KE QA+Y +NPE NQ + ++YQT NVNPLAGC+P+L QIP+FI LYR++LNLAKEN L ESFLW+P+LEGPT+ + P WI K+W DG P LGW DT+A++ IPLILV++Q S +IMQP +DP Q
Sbjct: 88 VTTGAADSAATAVGAAASASPEVMEAAADASNNGW--FGFLTLPIEGLLNIIHNTLVSTGMDANAWGVSIIVMTLVIKAATFPLTKSQLESTNKMQALQPVIKEAQAKYQSNPEVMNQKIAEIYQTNNVNPLAGCVPSLVQIPVFIGLYRAVLNLAKENALDESFLWLPNLEGPTYGADPASGSDWIFKNWVDGVPSLGWDDTLAFLAIPLILVVSQYASMQIMQPKSQDPQQ 318
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XYI9_HEMAN) HSP 1 Score: 218 bits (555), Expect = 1.060e-63 Identity = 141/330 (42.73%), Postives = 197/330 (59.70%), Query Frame = 1
Query: 22 LVAACAMANAGTVSAF-APPG-----LAVSARSRFVPANSWTSRSSAPAARPSASGARGLQAM-----------------VDPGMMHGVDPAWLHQVLTGIADGDVAAA------VAEEAAXXXXXGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPT-----FDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPK--DPSQ 903
+V ACA+ G+ SAF APP LA +ARS P + S P A GA GL+A+ +D ++ VD + +H + AD A A V EEA G + L+ GV+ +T LH + + +P A+G +I+ FT+FVK IT+PL Y+Q++ST MQ L PK+K +QARY ++P+ N+ QLY+ E VNPLAGC+PAL Q+PIFI+LYR LL LA ++KL ESFLWIPSLEGP + P + + W+ W DGAP LGW DT+AY+++P+ILV+TQ+IS +++QPP+ DP+Q
Sbjct: 27 VVLACAV---GSTSAFTAPPSAGGLRLAPTARSTLSPRS--VRLGSLPLAPTRTLGATGLRAIAEHADAANHFAFLLSTHMDADVLSKVDMSEVHNAVMHFADAAAATAKEAANTVTEEAKKEDDGGIFGL-LVKGVSTCLVT-LHSIFKAANLPGAWGWAIMTFTIFVKAITYPLNYKQMASTISMQKLQPKLKAIQARYKDDPQKQNEMTAQLYKDEEVNPLAGCIPALVQLPIFIALYRGLLELAMQDKLQESFLWIPSLEGPVGKYNPVTNLPEDGLGWLTKWVDGAPPLGWEDTLAYLSLPVILVVTQTISQKLLQPPQSDDPAQ 349 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7446.15621.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7446.15621.1 >prot_E_fasciculatus_S2_contig7446.15621.1 ID=prot_E_fasciculatus_S2_contig7446.15621.1|Name=mRNA_E_fasciculatus_S2_contig7446.15621.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=312bp MGRPLTALVAACAMANAGTVSAFAPPGLAVSARSRFVPANSWTSRSSAPAback to top mRNA from alignment at E_fasciculatus_S2_contig7446:151..5255- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7446.15621.1 ID=mRNA_E_fasciculatus_S2_contig7446.15621.1|Name=mRNA_E_fasciculatus_S2_contig7446.15621.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5105bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7446:151..5255- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7446:151..5255- >mRNA_E_fasciculatus_S2_contig7446.15621.1 ID=mRNA_E_fasciculatus_S2_contig7446.15621.1|Name=mRNA_E_fasciculatus_S2_contig7446.15621.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=936bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7446:151..5255- (Ectocarpus fasciculatus EfasUO2)back to top |