mRNA_E_fasciculatus_S2_contig7321.15514.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7321.15514.1
Unique NamemRNA_E_fasciculatus_S2_contig7321.15514.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V8_9PHAE)

HSP 1 Score: 370 bits (951), Expect = 1.880e-108
Identity = 257/345 (74.49%), Postives = 270/345 (78.26%), Query Frame = 3 
Query:  273 AAPAAGITLPLASGVTLGG-GVSAGEGGVVSSPAVVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQLALAKGEPVPPAPRQGDKGGAPATGGSSNSDVGRAPGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVGGMEGESAKPGASASQENGSAASVSLTARTKRRRSQDESXXXXXXXXNSADGDNAASTAAAPVDASSVAVNLREKLGAKLGIALSTINDRRGKADDGSQEAEEDEKGENDPTPGSASGSRGRVSAEGKVGESASQPEPEG-------AEGGRRADDEETRRANRLKRMRLMSGHYKLAVLEHSSE 1283
            AAPAAGI+LPLA+GVT GG G S GE  V+S PAV PGEEKRQVVEKMVGYVAKNGQAFEDRV+KRE SNPTFDFL+P NKFHAYYKRQLALAKGEPV PAP QG+ GGAPATGGSSNSDVGRA GAV            XXXXXXXXXXXX      V GG EGESAKPGA ASQENGSAAS SLTA TKRRR QDES   XXXXX             APVDASS A NLREK G KL +ALST+ D+RGKA DG Q A+ D+KGE DPTPGSASGSRGR+SAEGKV  +ASQPEPEG       AEGGR ADDEETRRANRLKRMRLMSGHYKLAVLEHSSE
Sbjct:  407 AAPAAGISLPLAAGVTFGGVGGSVGEAAVLS-PAV-PGEEKRQVVEKMVGYVAKNGQAFEDRVKKREASNPTFDFLNPANKFHAYYKRQLALAKGEPVQPAPGQGNTGGAPATGGSSNSDVGRAAGAVPGSSASQRPSSSXXXXXXXXXXXXTPCGIAVGGGTEGESAKPGAPASQENGSAASGSLTAGTKRRRPQDESGGSXXXXXXXXXXXX---XXXAPVDASSAAGNLREKQGDKLRMALSTVKDKRGKAGDGRQAADGDKKGEGDPTPGSASGSRGRLSAEGKVC-AASQPEPEGVGAPSSAAEGGR-ADDEETRRANRLKRMRLMSGHYKLAVLEHSSE 744
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ62_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 9.430e-102
Identity = 244/327 (74.62%), Postives = 252/327 (77.06%), Query Frame = 3 
Query:  252 AAVPPATAAPAAGITLPLASGVTLG-GGVSAGEGGVVSSPAVVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQLALAKGEPVPPAPRQGDKGGAPATGGSSNSDVGRAPGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVGGMEGESAKPGASASQENGSAASVSLTARTKRRRSQDESXXXXXXXXNSADGDNAASTAAAPVDASSVAVNLREKLGAKLGIALSTINDRRGKADDGSQEAEEDEKGENDPTPGSASGSRGRVSAEGKVGESASQPEPEGA-------EGGRRADDEETR 1208
            AAVPPATAAP  G TLPLA+GV+LG  G S GEG V+ SPAV PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFL+P NKFHAYYKRQLALAKGEPV PAP QG+ GGAPATGGSSNSDV       XXXXXXX  XXX   XX             V GG EGESAKPGA A QENGSAASVSLTA  KRRR QDESXX      NSADGD+A STAA PVD SS   NLREKLG KLGIALST+NDRRGKADDG Q  E DEKGE DPTPGSASG RGRVSAEGKV  +ASQPEPEGA       EGGR ADDEETR
Sbjct:  380 AAVPPATAAPT-GTTLPLAAGVSLGEAGGSVGEG-VLLSPAV-PGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLALAKGEPVSPAPGQGNTGGAPATGGSSNSDVRXXXXXXXXXXXXXRPXXXYTAXXTAASVGGASCGIAVGGGTEGESAKPGAPADQENGSAASVSLTAGKKRRRPQDESXXGGSNG-NSADGDDATSTAAGPVDTSSAEGNLREKLGDKLGIALSTVNDRRGKADDGRQVVEGDEKGEGDPTPGSASGRRGRVSAEGKV-RAASQPEPEGAGAPSSAAEGGR-ADDEETR 700
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: Pre-mRNA (splicing factor PRP21 like protein-domain-containing protein n=1 Tax=Stachybotrys elegans TaxID=80388 RepID=A0A8K0SGF4_9HYPO)

HSP 1 Score: 68.6 bits (166), Expect = 3.930e-8
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:  372 VVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQLA 542
            V+P  E R ++EK  GYVA+NG  FEDR+R +E SNP F FLSP + +H +Y+ +L+
Sbjct:   24 VIPPREIRNILEKTAGYVARNGNVFEDRIRDKESSNPKFSFLSPNDAYHDFYQWRLS 80
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IYS6_BUGNE)

HSP 1 Score: 68.2 bits (165), Expect = 7.280e-8
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 3 
Query:  357 VSSPAV---VPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYK---RQLALAKGEPVPPAP 575
            +S P V    P  E R +V+K   +VA+NG +FE+R++  E++NP F+FL+PT+ +HAYY+   ++    KG+ V P P
Sbjct:   31 ISKPMVGIIYPPPEVRNIVDKTASFVARNGPSFEERIKANEINNPKFNFLTPTDPYHAYYQHKVKEFGEGKGQDVVPQP 109
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7P5R5_DIBLA)

HSP 1 Score: 63.9 bits (154), Expect = 1.270e-7
Identity = 27/65 (41.54%), Postives = 46/65 (70.77%), Query Frame = 3 
Query:  372 VVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQLA-LAKGEPV 563
            + P  E R +V+K   +VA+NG  FE R+R+ E++NP F+FL+P++ +HAYY+ ++   A+G+ V
Sbjct:   20 IYPPPEVRNIVDKTASFVARNGPDFESRIRQNEINNPKFNFLTPSDPYHAYYQHKVRDFAEGKAV 84
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: splicing (factor 3A subunit 1-like isoform X1 n=2 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C758172)

HSP 1 Score: 67.0 bits (162), Expect = 1.540e-7
Identity = 28/64 (43.75%), Postives = 47/64 (73.44%), Query Frame = 3 
Query:  372 VVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQLA-LAKGEP 560
            + P  E R +V+K  G+VA+NGQ FE R+++ EV+NP F+FL+P + +HAYY+ ++  + +G+P
Sbjct:   11 IYPPPEVRNIVDKTAGFVARNGQEFEHRIKQNEVNNPKFNFLNPGDPYHAYYQHKVVQIREGKP 74
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: Surp (module n=8 Tax=leotiomyceta TaxID=716546 RepID=A0A2V1B8Q1_9HELO)

HSP 1 Score: 65.9 bits (159), Expect = 2.670e-7
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:  357 VSSPA--VVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQL 539
            + +PA  V+P  E + ++EK  GYVA+NG  FEDR+R++E  NP F FLSP + ++AYY  +L
Sbjct:   17 IKAPAGVVLPPREIKAILEKTAGYVARNGNVFEDRIREKEKHNPKFSFLSPNDSYNAYYLWRL 79
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: Uncharacterized (protein n=1 Tax=Marssonina coronariae TaxID=503106 RepID=A0A218YWG2_9HELO)

HSP 1 Score: 65.9 bits (159), Expect = 2.930e-7
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:  372 VVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQLALAK 551
            V+P  E + ++EK  GYVA+NG  FEDR+R++E  NP F FLSP + ++AYY  +L   K
Sbjct:   24 VLPPREIKAILEKTAGYVARNGNVFEDRIREKEKHNPKFSFLSPNDSYNAYYLWRLGEIK 83
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: Splicing (factor 3 subunit 1 n=3 Tax=Crassostrea TaxID=6564 RepID=K1Q318_CRAGI)

HSP 1 Score: 65.9 bits (159), Expect = 3.540e-7
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:  372 VVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYK---RQLALAKG-EPVPPAPRQ 581
            + P  E R +V+K   +VA+NG  FE R+RK E++N  F+FL+P++ +HAYY+   R+    +G EPV P P Q
Sbjct:   33 IYPPPEVRNIVDKTASFVARNGPEFESRIRKNEMNNSKFNFLNPSDPYHAYYQHKVREFKEGRGQEPVAPKPSQ 106
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Match: splicing (factor 3A subunit 1 n=1 Tax=Dryobates pubescens TaxID=118200 RepID=UPI0005216433)

HSP 1 Score: 65.5 bits (158), Expect = 4.770e-7
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  372 VVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQLALAK 551
            + P  E R +V+K   +VA+NG  FE R+R+ E++NP F+FL+PT+ +HAYY+ +++  K
Sbjct:   72 IYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPTDPYHAYYRHKVSEFK 131
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7321.15514.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.880e-10874.49protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.430e-10274.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Pre-mRNA3.930e-850.88splicing factor PRP21 like protein-domain-containi... [more]
Uncharacterized7.280e-840.51protein n=1 Tax=Bugula neritina TaxID=10212 RepID=... [more]
Uncharacterized1.270e-741.54protein (Fragment) n=1 Tax=Dibothriocephalus latus... [more]
splicing1.540e-743.75factor 3A subunit 1-like isoform X1 n=2 Tax=Euryte... [more]
Surp2.670e-747.62module n=8 Tax=leotiomyceta TaxID=716546 RepID=A0A... [more]
Uncharacterized2.930e-748.33protein n=1 Tax=Marssonina coronariae TaxID=503106... [more]
Splicing3.540e-743.24factor 3 subunit 1 n=3 Tax=Crassostrea TaxID=6564 ... [more]
splicing4.770e-743.33factor 3A subunit 1 n=1 Tax=Dryobates pubescens Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7321contigE_fasciculatus_S2_contig7321:1309..4823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score302.8
Seed ortholog evalue3.7e-79
Seed eggNOG ortholog2880.D7FJ62
Preferred nameSFSWAP
Model size2976
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000395,GO:0000398,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0033119,GO:0034622,GO:0034641,GO:0043170,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0045292,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048519,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903311,GO:1903312
Exons2
EggNOG free text desc.mRNA 5'-splice site recognition
EggNOG OGsKOG1847@1,KOG1847@2759
Cds size1800
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842396.3912592-UTR-E_fasciculatus_S2_contig7321:1308..17181696842396.3912592-UTR-E_fasciculatus_S2_contig7321:1308..1718Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7321 1309..1718 +
1696842396.429516-UTR-E_fasciculatus_S2_contig7321:4057..48231696842396.429516-UTR-E_fasciculatus_S2_contig7321:4057..4823Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7321 4058..4823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842396.4056728-CDS-E_fasciculatus_S2_contig7321:1718..17741696842396.4056728-CDS-E_fasciculatus_S2_contig7321:1718..1774Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7321 1719..1774 +
1696842396.4174051-CDS-E_fasciculatus_S2_contig7321:2313..40571696842396.4174051-CDS-E_fasciculatus_S2_contig7321:2313..4057Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7321 2314..4057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7321.15514.1prot_E_fasciculatus_S2_contig7321.15514.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7321 1719..4057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7321.15514.1

>prot_E_fasciculatus_S2_contig7321.15514.1 ID=prot_E_fasciculatus_S2_contig7321.15514.1|Name=mRNA_E_fasciculatus_S2_contig7321.15514.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=600bp
MVGYVAKNGQAFEDRVRKREVSNPTFDFLSPTNKFHAYYKRQLALAKGEP
VPPAPRQGDKGGAPATGGSSNSDVGRAPGAVPGSSASQRQSSRDTASSTA
GSVGGTPGGVPVVGGMEGESAKPGASASQENGSAASVSLTARTKRRRSQD
ESDESGGSNGNSADGDNAASTAAAPVDASSVAVNLREKLGAKLGIALSTI
NDRRGKADDGSQEAEEDEKGENDPTPGSASGSRGRVSAEGKVGESASQPE
PEGAEGGRRADDEETRRANRLKRMRLMSGHYKLAVLEHSSEKQQQQQQQD
GAAAVASTEPAPGAVSAAGGGGDGVGVTTTPRRTACLTWTTPAAVATRKG
EARATTTKLPAAASRRSPPPARGRHLVAVRQNGVIVHRGPVVPTAEAAEK
TGPIPGTAHGAAGDQELKTAGAGEGRGSAGAARAIARAGGTRMRLLVEKT
GGMHGGAEAAAAVEAGHAVAVSARPAAHQAEATGIGHRGPEIAQAENGAT
TAREETEARPAVEARLRLLGSRRAVAAGGNGTVGRGGTAERGPARSREVI
VRPAAGGVRRTLARRVGVRRDPTGGAGAGTEGRAGSGLAATSDPEGDRL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7321:1309..4823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7321.15514.1 ID=mRNA_E_fasciculatus_S2_contig7321.15514.1|Name=mRNA_E_fasciculatus_S2_contig7321.15514.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3515bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7321:1309..4823+ (Ectocarpus fasciculatus EfasUO2)
CCGCCCTCCTCTCGTCTGCCGAACCCCCTTGTCGTGCCCGGCCCTTGTTA
CCGTTGTCGCCACGACGGCAATCACGGTCGCTGGATCCTGCCGCTGCAGC
TGCCAAGGAAGCGCCGCCGCCGCCTCCCCCTTCTCCTCCGCCACCGCCAC
CACCGCCGGACGCCGAAAATTCGGACGACGTGGATGCTCCCAACCTCCTG
GGTGGCGCGTATGAATCCTCCGACGACGATGACGATAACGCCCCCGCCGA
GGCCGCCGTCCCGCCGGCCACCGCCGCTCCCGCCGCAGGGATAACGTTAC
CGCTGGCTTCGGGGGTGACCTTGGGGGGGGGCGTTTCGGCGGGGGAAGGT
GGCGTGGTGTCGTCCCCGGCGGTGGTGCCAGGGGAAGAGAAGCGACAGGT
GGTGGAGAAGATGGTCGGCTACGTTGCCAAGAACGGCCAGGCGTTCGAGG
ACCGTGTCAGGAAGAGGTGCGGGCTATTTGTGGGTTCGGTTGCGGGGCGA
GCGACGTTGTGTCAACCCTGCAGAATGTAGTTTTACGTTGGTTCGACCAA
GGTGTGAGTGTGGTTTTGGCGTTTTTGTTAGCATTCGGAACGCGTCGTCC
GATGCCGTCGAGCTGTTGGGGTACCTTCTCAACAAACGACTGAGTAGCTC
GAGCGTCAGAAGCGAAGTGTGAGTGGGTGGGTGACCACCTCGAGCAGCAC
ATATTTTTTTGCCAGCTGAGCGAGTGCTGCGAGTAGTTGTACCTCGTTTT
TTGAGTGAACGCGTTACAGGTTACAGGGCTTGGATCACGGAAGGCTCCCA
TCTCTGCGGGGGGAGGTGTGTCACGATTGCTCACTGAACTTGGTAGTCAG
CAAGAGTAGAAGACCGGTCATGCGCCTCATAGGGTTGAAACCACTCCCTT
GACCTTTTTTCGTGCAGCAGCAGCAGCAGACTCCGACGCATTCATCTAAC
CCGCCCCCCGCCCTCTTGCCCATTCCCCCGCCTCTTCTGTTTTGTTTCGA
GCCAGGGAAGTATCGAATCCCACGTTCGACTTCCTATCCCCGACGAACAA
GTTCCACGCCTACTACAAGAGGCAGCTAGCGCTGGCGAAGGGCGAGCCTG
TTCCTCCCGCCCCCCGGCAAGGCGACAAAGGTGGCGCGCCAGCAACCGGA
GGATCGAGCAACTCCGACGTTGGGCGCGCACCCGGTGCTGTGCCGGGCTC
AAGCGCTAGCCAACGCCAATCCTCAAGGGACACAGCTTCGAGCACAGCTG
GTTCCGTGGGCGGTACGCCTGGCGGCGTCCCGGTCGTTGGAGGTATGGAA
GGAGAATCCGCCAAGCCCGGCGCATCGGCTTCCCAGGAAAATGGCTCCGC
TGCCTCTGTCTCGTTGACTGCCAGGACAAAGCGACGGCGATCGCAAGACG
AAAGTGACGAAAGTGGAGGGTCGAACGGCAATAGCGCGGATGGGGACAAC
GCTGCGTCAACCGCGGCGGCGCCGGTCGACGCCTCCAGCGTCGCGGTGAA
CCTCCGGGAGAAGCTAGGGGCCAAGCTGGGGATAGCGCTGTCCACGATCA
ACGACAGACGGGGTAAGGCAGACGATGGTAGTCAGGAGGCGGAGGAAGAC
GAGAAGGGCGAAAATGATCCGACTCCTGGCTCCGCCAGCGGCAGCCGCGG
CCGTGTATCCGCGGAGGGAAAAGTTGGCGAGTCCGCGAGTCAGCCTGAAC
CAGAGGGTGCGGAGGGCGGTCGTCGTGCGGATGACGAAGAAACGAGGCGA
GCGAACCGCCTGAAGCGGATGCGGCTGATGTCGGGCCACTACAAGCTCGC
CGTCTTAGAGCACTCGTCGGAGAAACAGCAGCAACAACAGCAGCAGGACG
GCGCCGCTGCCGTCGCGTCGACTGAGCCGGCCCCGGGAGCGGTGTCGGCG
GCTGGCGGTGGTGGGGATGGCGTGGGAGTGACGACTACTCCTCGGCGAAC
GGCCTGTCTGACCTGGACTACACCAGCAGCAGTAGCGACGAGGAAGGGGG
AGGCGAGGGCGACGACGACGAAGCTACCGGCAGCAGCGAGCAGGCGAAGC
CCGCCGCCCGCAAGAGGTCGTCATCTAGTGGCGGTACGCCAGAACGGGGT
GATCGTCCACCGCGGGCCGGTGGTGCCAACGGCAGAAGCAGCGGAAAAGA
CAGGCCCCATTCCAGGGACAGCACACGGAGCGGCCGGGGACCAAGAGCTG
AAGACGGCGGGAGCGGGGGAAGGGAGAGGGAGCGCCGGCGCGGCGAGAGC
CATCGCAAGAGCGGGAGGGACAAGGATGCGGCTCCTCGTCGAGAAGACCG
GAGGGATGCACGGCGGGGCAGAAGCCGCAGCAGCAGTCGAAGCCGGCCAC
GCGGTGGCGGTGAGCGCACGGCCAGCGGCGCACCAAGCAGAAGCGACAGG
GATCGGTCATCGCGGGCCGGAGATCGCGCAGGCCGAAAACGGAGCGACCA
CAGCGAGAGAGGAGACAGAGGCAAGACCAGCGGTAGAAGCTCGGCTTCGT
CTTCTCGGAAGCCGGAGAGCAGTAGCGGCGGGAGGGAACGGGACGGTAGG
GCGGGGGGGGACAGCAGAGAGAGGGCCCGCGAGAAGCCGAGAGGTGATCG
TGAGACCAGCGGCAGGAGGAGTTCGAAGGACGCTCGCAAGGAGGGTGGGC
GTGCGGAGAGATCCAACAGGAGGAGCAGGAGCAGGGACAGAGGGGAGAGC
CGGGAGCGGGCTGGCAGCAACAAGCGATCCAGAAGGCGATAGATTGTGAT
CTTCATGGAAGTATTAGGGCGCTAGACTACATGATGTTTCGCGATTGTTG
CTTTAGGTCTGTTTTTTCTCGTCCCCCTCCCACGATGTCTCTGTACATAT
ATATCAGTATGCGTGTTTGGTTGCGTATGCGCGGAACGTCCTTGTACTCA
CAGCGCGCGAGCTGGTATGTTATAGGTGTTTGAAAATCGAGGATGGCTTG
GGATCGAGGCACGTACTAGGTGTTGAAGAGTACGTAGTGCGTGTTCAGTT
TGGTTATGATAGTCTTGACGTGACAATGACGTGACAATGGTAGCTTTGCG
GACTCTCGAGAACGAGCGCTCGACTTTAAGCATTGCGGTTGCGAAATCGT
CAACTTGTCCTCCCCTGGTTGCGAACGGGATAGTGTTTCGTTCAATCGTG
TTTTGAACCAATACCGAATGGTTACGTCCATCCCCACGGGACAAATGTTT
TTCGAGTTCAAACGTGCACCGCGCGAAATTGGTCAAGCGCGTTGGTCTGT
AGACTACTGCTGCAGGCAGGCGTAGAGTAGAGGACACACACATCAATGGT
ACCGCGTTGTTCGTTTCTTCAGCGTCTAGCGCCTCAGTTTCTGGGGCGTT
GAGTCACAAGTGATGGAGCTAGTTTGCGTTGCACATCCACACGGAACTAC
ACGTAGCAACGTTACAAGAGTGTTTTCTCTGCGTGTGTGCTCGCCAAATC
ATGCATGGCTCCAACAAAGAGGTGTCGCGATCGGTGTCCGATGGCACCTT
TGATTTTTCTGTCAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7321:1309..4823+

>mRNA_E_fasciculatus_S2_contig7321.15514.1 ID=mRNA_E_fasciculatus_S2_contig7321.15514.1|Name=mRNA_E_fasciculatus_S2_contig7321.15514.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1800bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7321:1309..4823+ (Ectocarpus fasciculatus EfasUO2)
ATGGTCGGCTACGTTGCCAAGAACGGCCAGGCGTTCGAGGACCGTGTCAG
GAAGAGGGAAGTATCGAATCCCACGTTCGACTTCCTATCCCCGACGAACA
AGTTCCACGCCTACTACAAGAGGCAGCTAGCGCTGGCGAAGGGCGAGCCT
GTTCCTCCCGCCCCCCGGCAAGGCGACAAAGGTGGCGCGCCAGCAACCGG
AGGATCGAGCAACTCCGACGTTGGGCGCGCACCCGGTGCTGTGCCGGGCT
CAAGCGCTAGCCAACGCCAATCCTCAAGGGACACAGCTTCGAGCACAGCT
GGTTCCGTGGGCGGTACGCCTGGCGGCGTCCCGGTCGTTGGAGGTATGGA
AGGAGAATCCGCCAAGCCCGGCGCATCGGCTTCCCAGGAAAATGGCTCCG
CTGCCTCTGTCTCGTTGACTGCCAGGACAAAGCGACGGCGATCGCAAGAC
GAAAGTGACGAAAGTGGAGGGTCGAACGGCAATAGCGCGGATGGGGACAA
CGCTGCGTCAACCGCGGCGGCGCCGGTCGACGCCTCCAGCGTCGCGGTGA
ACCTCCGGGAGAAGCTAGGGGCCAAGCTGGGGATAGCGCTGTCCACGATC
AACGACAGACGGGGTAAGGCAGACGATGGTAGTCAGGAGGCGGAGGAAGA
CGAGAAGGGCGAAAATGATCCGACTCCTGGCTCCGCCAGCGGCAGCCGCG
GCCGTGTATCCGCGGAGGGAAAAGTTGGCGAGTCCGCGAGTCAGCCTGAA
CCAGAGGGTGCGGAGGGCGGTCGTCGTGCGGATGACGAAGAAACGAGGCG
AGCGAACCGCCTGAAGCGGATGCGGCTGATGTCGGGCCACTACAAGCTCG
CCGTCTTAGAGCACTCGTCGGAGAAACAGCAGCAACAACAGCAGCAGGAC
GGCGCCGCTGCCGTCGCGTCGACTGAGCCGGCCCCGGGAGCGGTGTCGGC
GGCTGGCGGTGGTGGGGATGGCGTGGGAGTGACGACTACTCCTCGGCGAA
CGGCCTGTCTGACCTGGACTACACCAGCAGCAGTAGCGACGAGGAAGGGG
GAGGCGAGGGCGACGACGACGAAGCTACCGGCAGCAGCGAGCAGGCGAAG
CCCGCCGCCCGCAAGAGGTCGTCATCTAGTGGCGGTACGCCAGAACGGGG
TGATCGTCCACCGCGGGCCGGTGGTGCCAACGGCAGAAGCAGCGGAAAAG
ACAGGCCCCATTCCAGGGACAGCACACGGAGCGGCCGGGGACCAAGAGCT
GAAGACGGCGGGAGCGGGGGAAGGGAGAGGGAGCGCCGGCGCGGCGAGAG
CCATCGCAAGAGCGGGAGGGACAAGGATGCGGCTCCTCGTCGAGAAGACC
GGAGGGATGCACGGCGGGGCAGAAGCCGCAGCAGCAGTCGAAGCCGGCCA
CGCGGTGGCGGTGAGCGCACGGCCAGCGGCGCACCAAGCAGAAGCGACAG
GGATCGGTCATCGCGGGCCGGAGATCGCGCAGGCCGAAAACGGAGCGACC
ACAGCGAGAGAGGAGACAGAGGCAAGACCAGCGGTAGAAGCTCGGCTTCG
TCTTCTCGGAAGCCGGAGAGCAGTAGCGGCGGGAGGGAACGGGACGGTAG
GGCGGGGGGGGACAGCAGAGAGAGGGCCCGCGAGAAGCCGAGAGGTGATC
GTGAGACCAGCGGCAGGAGGAGTTCGAAGGACGCTCGCAAGGAGGGTGGG
CGTGCGGAGAGATCCAACAGGAGGAGCAGGAGCAGGGACAGAGGGGAGAG
CCGGGAGCGGGCTGGCAGCAACAAGCGATCCAGAAGGCGATAGATTGTGA
back to top