mRNA_E_fasciculatus_S2_contig7273.15466.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI) HSP 1 Score: 207 bits (526), Expect = 1.730e-66 Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1
Query: 1 MADDEQAASEAQESATERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
MADDEQAASEAQES TERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE
Sbjct: 1 MADDEQAASEAQESVTERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.080e-25 Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 76 EIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
+IPEE+ +KA + AMD++ IEKDIAT +K FD++ G+WHCV+GRSFGCSVTHETK+L FF+ DQ +VLLFCS E
Sbjct: 20 DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA) HSP 1 Score: 101 bits (252), Expect = 7.100e-25 Identity = 51/91 (56.04%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 52 RKIEVLIAEIPE----ELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
RK+ +L AE PE +LQ+ A R+V ++ K+ I KD+AT+VK+HFDE+ G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E
Sbjct: 15 RKVVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 6.430e-22 Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 76 EIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFK 273
+IPE LQ+KA RV + + + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+
Sbjct: 10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.440e-21 Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 49 ERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQM 285
ER + VL AE+PE+L+ KA A+D +++EKD+A VKK FDE G+WHCV GR+FGCS+THETK+L FFK DQ+
Sbjct: 10 ERVLRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CC43_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.320e-19 Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 1
Query: 1 MADDEQAASEAQESATERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
MADD ++ + RK+ + P + + A ++ A+DK+ IEKD+AT VK FD++ G+WHC+ G+SFGCS+THETK+L + + D +F LLFCS
Sbjct: 1 MADDSDEEEVGKKKVSTRKVHLHQVLAPNNMCELAVEKLDEAIDKHTIEKDMATAVKTTFDKDYGGTWHCIVGKSFGCSITHETKYLMYIQVDHLFCLLFCS 102
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7ZSR5_ACAPL) HSP 1 Score: 86.3 bits (212), Expect = 4.900e-19 Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 43 ATERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
A+++K V A++ EE+QQ A AM+K++IEKDIA VKK FD++ +WHC+ GR+FG VTHETKH +F DQ+ VLLF S
Sbjct: 2 ASDKKAVVKNADMSEEMQQDAVECAKQAMEKFNIEKDIAAFVKKEFDKKFNPTWHCIVGRNFGSYVTHETKHFIYFYLDQVAVLLFKS 89
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WG77_9PLAT) HSP 1 Score: 86.3 bits (212), Expect = 5.030e-19 Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 52 RKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
RK + A++PE++Q +A R AMDKY+IEKDIA +KK FD+ +WHC+ GR+FG VTHETKH +F Q+ VLLF S
Sbjct: 6 RKAVIKNADMPEDMQAEAVRCCADAMDKYNIEKDIAAYLKKEFDKRYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 90
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0G4EGY2_VITBC) HSP 1 Score: 85.9 bits (211), Expect = 6.740e-19 Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 46 TERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
TERK + A++ EE+QQ A A++KY+IEKDIA +KK FD++ +WHCV GR+FG VTHETKH +F Q+ VLLF S
Sbjct: 2 TERKAVIKNADMSEEMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCVVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 88
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=10 Tax=Bilateria TaxID=33213 RepID=A0A091MGV3_9PASS) HSP 1 Score: 85.9 bits (211), Expect = 6.740e-19 Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 46 TERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
++RK + A++ EE+QQ A A+DKY+IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S
Sbjct: 2 SDRKAVIKNADMSEEMQQDAVECATQALDKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7273.15466.1 >prot_E_fasciculatus_S2_contig7273.15466.1 ID=prot_E_fasciculatus_S2_contig7273.15466.1|Name=mRNA_E_fasciculatus_S2_contig7273.15466.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp MADDEQAASEAQESATERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKback to top mRNA from alignment at E_fasciculatus_S2_contig7273:3193..4639+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7273.15466.1 ID=mRNA_E_fasciculatus_S2_contig7273.15466.1|Name=mRNA_E_fasciculatus_S2_contig7273.15466.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1447bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7273:3193..4639+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7273:3193..4639+ >mRNA_E_fasciculatus_S2_contig7273.15466.1 ID=mRNA_E_fasciculatus_S2_contig7273.15466.1|Name=mRNA_E_fasciculatus_S2_contig7273.15466.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7273:3193..4639+ (Ectocarpus fasciculatus EfasUO2)back to top |