mRNA_E_fasciculatus_S2_contig7273.15466.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7273.15466.1
Unique NamemRNA_E_fasciculatus_S2_contig7273.15466.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 1.730e-66
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1
Query:    1 MADDEQAASEAQESATERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
            MADDEQAASEAQES TERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE
Sbjct:    1 MADDEQAASEAQESVTERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.080e-25
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   76 EIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
            +IPEE+ +KA  +   AMD++ IEKDIAT +K  FD++  G+WHCV+GRSFGCSVTHETK+L FF+ DQ +VLLFCS E
Sbjct:   20 DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.100e-25
Identity = 51/91 (56.04%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   52 RKIEVLIAEIPE----ELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
            RK+ +L AE PE    +LQ+ A R+V  ++ K+ I KD+AT+VK+HFDE+  G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E
Sbjct:   15 RKVVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.430e-22
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   76 EIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFK 273
            +IPE LQ+KA  RV   + +  + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+
Sbjct:   10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.440e-21
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   49 ERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQM 285
            ER + VL AE+PE+L+ KA      A+D +++EKD+A  VKK FDE   G+WHCV GR+FGCS+THETK+L FFK DQ+
Sbjct:   10 ERVLRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CC43_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-19
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    1 MADDEQAASEAQESATERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            MADD       ++  + RK+ +     P  + + A  ++  A+DK+ IEKD+AT VK  FD++  G+WHC+ G+SFGCS+THETK+L + + D +F LLFCS
Sbjct:    1 MADDSDEEEVGKKKVSTRKVHLHQVLAPNNMCELAVEKLDEAIDKHTIEKDMATAVKTTFDKDYGGTWHCIVGKSFGCSITHETKYLMYIQVDHLFCLLFCS 102          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7ZSR5_ACAPL)

HSP 1 Score: 86.3 bits (212), Expect = 4.900e-19
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   43 ATERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            A+++K  V  A++ EE+QQ A      AM+K++IEKDIA  VKK FD++   +WHC+ GR+FG  VTHETKH  +F  DQ+ VLLF S
Sbjct:    2 ASDKKAVVKNADMSEEMQQDAVECAKQAMEKFNIEKDIAAFVKKEFDKKFNPTWHCIVGRNFGSYVTHETKHFIYFYLDQVAVLLFKS 89          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WG77_9PLAT)

HSP 1 Score: 86.3 bits (212), Expect = 5.030e-19
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   52 RKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            RK  +  A++PE++Q +A R    AMDKY+IEKDIA  +KK FD+    +WHC+ GR+FG  VTHETKH  +F   Q+ VLLF S
Sbjct:    6 RKAVIKNADMPEDMQAEAVRCCADAMDKYNIEKDIAAYLKKEFDKRYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 90          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0G4EGY2_VITBC)

HSP 1 Score: 85.9 bits (211), Expect = 6.740e-19
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   46 TERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            TERK  +  A++ EE+QQ A      A++KY+IEKDIA  +KK FD++   +WHCV GR+FG  VTHETKH  +F   Q+ VLLF S
Sbjct:    2 TERKAVIKNADMSEEMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCVVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 88          
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Match: Dynein (light chain n=10 Tax=Bilateria TaxID=33213 RepID=A0A091MGV3_9PASS)

HSP 1 Score: 85.9 bits (211), Expect = 6.740e-19
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   46 TERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            ++RK  +  A++ EE+QQ A      A+DKY+IEKDIA  +KK FD++   +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:    2 SDRKAVIKNADMSEEMQQDAVECATQALDKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7273.15466.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dynein1.730e-6699.04light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
Dynein1.080e-2562.03light chain n=1 Tax=Rhizochromulina marina TaxID=1... [more]
Dynein7.100e-2556.04light chain n=1 Tax=Fibrocapsa japonica TaxID=9461... [more]
Dynein6.430e-2263.64light chain n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Dynein2.440e-2156.96light chain n=1 Tax=Phaeomonas parva TaxID=124430 ... [more]
Dynein1.320e-1943.14light chain n=1 Tax=Dictyocha speculum TaxID=35687... [more]
Dynein4.900e-1951.14light chain n=2 Tax=Valvatida TaxID=41166 RepID=A0... [more]
Dynein5.030e-1951.76light chain n=2 Tax=Protopolystoma xenopodis TaxID... [more]
Dynein6.740e-1951.72light chain n=3 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
Dynein6.740e-1948.28light chain n=10 Tax=Bilateria TaxID=33213 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7273contigE_fasciculatus_S2_contig7273:3193..4639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score209.9
Seed ortholog evalue5.7e-52
Seed eggNOG ortholog2880.D7FQ38
Model size517
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007600.1
Cds size315
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842391.7146132-CDS-E_fasciculatus_S2_contig7273:3192..32491696842391.7146132-CDS-E_fasciculatus_S2_contig7273:3192..3249Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7273 3193..3249 +
1696842391.7280169-CDS-E_fasciculatus_S2_contig7273:3752..39081696842391.7280169-CDS-E_fasciculatus_S2_contig7273:3752..3908Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7273 3753..3908 +
1696842391.7411137-CDS-E_fasciculatus_S2_contig7273:4335..44371696842391.7411137-CDS-E_fasciculatus_S2_contig7273:4335..4437Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7273 4336..4437 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842391.7516243-UTR-E_fasciculatus_S2_contig7273:4437..46391696842391.7516243-UTR-E_fasciculatus_S2_contig7273:4437..4639Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7273 4438..4639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7273.15466.1prot_E_fasciculatus_S2_contig7273.15466.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7273 3193..4437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7273.15466.1

>prot_E_fasciculatus_S2_contig7273.15466.1 ID=prot_E_fasciculatus_S2_contig7273.15466.1|Name=mRNA_E_fasciculatus_S2_contig7273.15466.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
MADDEQAASEAQESATERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEK
DIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLF
CSPE*
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mRNA from alignment at E_fasciculatus_S2_contig7273:3193..4639+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7273.15466.1 ID=mRNA_E_fasciculatus_S2_contig7273.15466.1|Name=mRNA_E_fasciculatus_S2_contig7273.15466.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1447bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7273:3193..4639+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGACGATGAGCAGGCAGCTTCAGAGGCACAAGAGTCGGCAACGGA AAGGAAGGTGTGTGCGATTGGCGGCGCTCGTTGAACGTATTTTAATCATC GTGACAACGTTGACACGTAAGATACGCGCATGTGCAGTGTAGTTGGATAT GGAGGTGTAATTCATGTACAGTTTTCATACAGACTTTTGTATCGACACTA ATATGTACATAGCCTGACCTCTACGGCATAGAGAGTGTTCGGTGTGGCCG CGAAAATTGCTTTGGGTTTGACTTTTCGATCTGGCTGGAGTCGACCGCTA CGTCTGATTGAGCTACAGACACCCTGATCATCCAGTGAGGATGGCGTCTA ATTTGCTCGTCGTGGATCCGGCGATGGCGTTCGGGGGTCGAAGTCTATTT GACAGAGGGTAATCACCGTGCTGAAGATTGTGCGGCGCGTGGAGAAAGAC CAATTGTTCTGCGCGAAATTAACTTGAAAACCTATCAAAAAAGGGTCCAC CGCTCGTACGCAAAACGTACAGTTCGGTCCTTCCTTCCCTTTGTGTGTCT CAACGTACAGATCGAGGTACTGATTGCGGAAATACCGGAAGAACTCCAAC AGAAGGCAAAACGGCGAGTGTGCTTGGCGATGGACAAATACGACATCGAG AAAGACATAGCCACTGATGTTAAGAAACATTTTGACGAGGAGTGCGAAGG CTCCTGGCATTGCGTGGTGAGGCATACGTTATATTGTAAACTCCGAAGTA GGGGAGTCCTACGGTAGATGGGCCAAGCAACCAGAGTGTACAAAGTCGTT GCGCGGTGATGCACATGGATCAACCGTGGCAACAGATTTCGATTCCTGTG TGTTTTGTATGGACGGCTAGAAGAGCAACGCCTGCACGCGGAAACGGTGC AGGGGAGGTGGTGGGGAGAGGCAACCGGTGTGCCGTGACCTCTTAAAGGG GGAGGCATCGATTGTCTTGGATGTACGCTACGACAACAGTGCTATTGCGC AGAACATGCAAGTGTCTTTCCCCGTCGACTACCGGTGGCACACAGGCACA CATGAAATCAATCCTTACAACGCCCACCACCGTCTCTTAACACCGGCGGT GTGTTCTTTCGGACTCGTTATCCCCCTCGAATGCCGAAAACAGTCGGGAC GGAGTTTCGGTTGCTCCGTGACCCACGAAACCAAGCACCTCTTCTTCTTC AAGTGCGACCAGATGTTCGTGCTACTTTTCTGTTCTCCCGAGTAGTAAAG AGTTCGCTGTTGTTTTAGAAAGGGATACATATTGTAGCACACTTCTCCGG TGCGGGGAGGTGTATCTATCTGTACATATCTTTTTTGCCAGCCATTTGGG CTGAGTCGGGGTTCATCATTCGTTCGGATTCGTTTAGACGACGTTCCGGC AGTCAGGTGATTTCCCCCTTTTCCTTTGGCGGATTGGATGCGGGGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7273:3193..4639+

>mRNA_E_fasciculatus_S2_contig7273.15466.1 ID=mRNA_E_fasciculatus_S2_contig7273.15466.1|Name=mRNA_E_fasciculatus_S2_contig7273.15466.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7273:3193..4639+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGACGATGAGCAGGCAGCTTCAGAGGCACAAGAGTCGGCAACGGA
AAGGAAGATCGAGGTACTGATTGCGGAAATACCGGAAGAACTCCAACAGA
AGGCAAAACGGCGAGTGTGCTTGGCGATGGACAAATACGACATCGAGAAA
GACATAGCCACTGATGTTAAGAAACATTTTGACGAGGAGTGCGAAGGCTC
CTGGCATTGCGTGTCGGGACGGAGTTTCGGTTGCTCCGTGACCCACGAAA
CCAAGCACCTCTTCTTCTTCAAGTGCGACCAGATGTTCGTGCTACTTTTC
TGTTCTCCCGAGTAG
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