mRNA_E_fasciculatus_S2_contig7257.15449.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7257.15449.1 vs.
Match: Rhomboid (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3N4_ECTSI) HSP 1 Score: 506 bits (1304), Expect = 1.350e-174 Identity = 248/278 (89.21%), Postives = 259/278 (93.17%), Query Frame = 1
Query: 4 MAISSLSRRQRVTVLLGAAAVAVLSRAYFVEVWKGVVLRGAGDTDANGYYKWEPTERSYIKSAQAPAGAWRVPNVYDLVSRGPQFRKDAGPLYFLKANDKKQQQSRVWFVMRSDEPEYRNPTAASILDNTPPSTGWAVGGPRKDVGGGLRPPPEVHVCGKRVTPDADPAEQRSGGGGGRRGRSAFELGRGPAEVVSYPGTVLLLVINLAFAYHLWAKRVSPDAVAISYALFWEEREYWRLFTASFSHFEPLHLVFNAMGTWNTRELERLLGTFRYLYL 837
MAISSLSRRQRVT LLGA+AVA+LS AYFVEVWKGVV+RG GDTDANGYYKWEPT++SYIKSAQAPAGAWRVPNVYDLVSRGPQFRKDAGPLYFLKA DK QQQSRVWFVMRS EPEYR+P A S+LDNTPP+TGWAVG P+KD G GL PPPEVHVCGKRV PDADPAEQ GGGGRRG+S FELGRGPAE+VSYPGTVLLLVINLAFAYHLWA RVSPDAVAISYA FWEEREYWRLFTASFSHFEPLHLVFNAMGTWNTRELERLLGTFRYLYL
Sbjct: 1 MAISSLSRRQRVTALLGASAVAILSWAYFVEVWKGVVVRGGGDTDANGYYKWEPTQKSYIKSAQAPAGAWRVPNVYDLVSRGPQFRKDAGPLYFLKAIDK-QQQSRVWFVMRSGEPEYRSPNALSVLDNTPPTTGWAVGSPQKDAGDGLGPPPEVHVCGKRVAPDADPAEQWKRGGGGRRGKSPFELGRGPAEIVSYPGTVLLLVINLAFAYHLWANRVSPDAVAISYARFWEEREYWRLFTASFSHFEPLHLVFNAMGTWNTRELERLLGTFRYLYL 277
BLAST of mRNA_E_fasciculatus_S2_contig7257.15449.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD5_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.080e-28 Identity = 85/251 (33.86%), Postives = 130/251 (51.79%), Query Frame = 1
Query: 85 YFVEVWKGVVLRGAGDTDANGYYKW----EPTERSYIKSAQAPAGAWRVPNVYDLVSRGPQFRKDAGPLYFLKANDKKQQQSRVWFVMRSDEPEYRNPTAASILDNTPPSTGWAVGGPRKDVGGGLRPPPEVHVCGKRVTPDADPAEQRSGGGGGRRGRSAFELGRGPAEVVSYPGTVLLLVINLAFAYHLWAKRVSPDAVAISYALFWEEREYWRLFTASFSHFEPLHLVFNAMGTWNTRELERLLGTFR 825
Y +W+GVV++GA + +GYY + EPT+ Y+++A+ R+P+V+ L + P + Y L+ +++ + + S Y + + PP TGW R G PP + + + P E R GRRG + G G A + + PGT +LL +N+A A LW +RV P+AVA+SYA ++++YWR TASFSHFEPLHL FN M +N+ LE+ G F+
Sbjct: 28 YHAGLWRGVVVQGARNPALDGYYHYNFADEPTQPMYVQNARRLGP--RLPDVFGLSALTPVTAGEDAKQYLLQQDNRGHWGLGLRGALTS---HYVSTDPSPPGTEAPPQTGWVA--VRARASGA---PPIIRAVWRA---EPAPKEWR-----GRRGGWEGD-GGGLAALAAMPGTAVLLAVNVAAALWLWVRRVPPEAVAVSYAAVVQDKQYWRCVTASFSHFEPLHLGFNMMSLYNSGPLEQDTGNFK 259
BLAST of mRNA_E_fasciculatus_S2_contig7257.15449.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XIE2_HETAK) HSP 1 Score: 91.3 bits (225), Expect = 3.610e-17 Identity = 79/292 (27.05%), Postives = 132/292 (45.21%), Query Frame = 1
Query: 1 HMAISSLSRRQRVTVLLGAAAVAVLSRAYFVEVWKGVVLRGAGDTDANGYYKWEPTERSYIKSAQAPAGAWRVPNVYDLVSRGPQFRKDAGPLYFLKANDKKQQQSRVWFVMRSDEPEYRNPTAASILDNT------PPSTGWAVGGPR------KDVGGGLRPPPEVHVCGKRVTPDADPAEQRSGGGGGRRGRSAFELGRGPAEVVSYPGTVLLLVINLAFAYHLWAKRVSP-DAVAISYALFWEEREYWRLFTASFSHFEPLHLVFNAMGTWNTRELERLLGTFRYLYL 837
H I L + + V+LG + + F + VV R G++ G Y + ++ S Q + +P++Y++ +G + G + A D+K +W++ + T A PP GW PR K++ + P P + G + + + A GG +G + + R E+++ P T+ LL++N A Y LWA RV P D V+ S F EE+EYWR TASFSHF+ +H+ FN + +N + +E + G + +L L
Sbjct: 5 HSLIGMLRSKTSILVILGTTLLFYFAARTFDDKSYLVVTRPEGNSPITGIYFASVSSGAFAWSLQQDKKTY-LPDIYEISYKGKDGLAEPGTIQL--ARDRK-----LWYIYERFPGDQTKKTVALFTAEAGQSAFYPPKAGWRAV-PRDNTREAKNLAAAV-PGPIITYGGPTLLWELEVA------GGSNKGSNKQKNIR---ELLATPVTLFLLIVNAAAGYKLWADRVLPVDRVSFSVRAFVEEQEYWRAITASFSHFDLMHIGFNLLSLYNLKAVETVYGPWHHLCL 277
BLAST of mRNA_E_fasciculatus_S2_contig7257.15449.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP04_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 4.830e-15 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 583 VVSYPGTVLLLVINLAFAYHLWAKRVSPDAVAISYALFWEEREYWRLFTASFSHFEPLHLVFNAMGTWNTRELERLLGT 819
++S PGT L+L +NL A+ L+AK V + VA+SY F +EYWR +TASF+H++ +HL+FN M +N LE + GT
Sbjct: 24 LISRPGTSLMLGLNLGAAWWLYAKSVPVERVAVSYEKFVVSKEYWRAWTASFAHYDIMHLLFNTMSLYNLGALEDIYGT 102
BLAST of mRNA_E_fasciculatus_S2_contig7257.15449.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQ68_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 6.350e-11 Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 505 PAEQRSGGGGGRRGRS--AFELGRGPAEVVSYPGTVLLLVINLAFAYHLWAKRVSPDAVAISYALFWEEREYWRLFTASFSHFEPLHLVFNAMGTWNTRELERLLGTFRYLYL 837
PAE GGG RR R + G G ++ ++ P T L++N A+ L+ RV + VA +Y EYWR TA+FSH+EP+H +FN + + LE LLG+ YL
Sbjct: 132 PAEVTCGGGALRRVRQLRSGRTGEGVSQAMAAPVTCAFLLLNAVVAFLLYRWRVPWEDVAFNYEAVVGGGEYWRAATAAFSHYEPMHFLFNMSSLYAMQGLEALLGSVSLFYL 244
BLAST of mRNA_E_fasciculatus_S2_contig7257.15449.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RQF1_THAOC) HSP 1 Score: 67.0 bits (162), Expect = 7.690e-9 Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 583 VVSYPGTVLLLVINLAFAYHLWAKRVSPDAVAISYALFWEEREYWRLFTASFSHFEPLHLVFNAMGTWNT-RELE-RLLGTFRYL 831
V+ +P T +++++N+A A+H W +RV P +V+ YA E E+WR T + +HF+ LH+ FN + N RE+E LL + +L
Sbjct: 244 VIDHPATCVIILVNVALAFHYWNRRVDPSSVSKQYARIVHEHEWWRGITGATAHFDLLHVGFNMVSMDNLGREIEGTLLNSIEFL 328 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7257.15449.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7257.15449.1 >prot_E_fasciculatus_S2_contig7257.15449.1 ID=prot_E_fasciculatus_S2_contig7257.15449.1|Name=mRNA_E_fasciculatus_S2_contig7257.15449.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=278bp MAISSLSRRQRVTVLLGAAAVAVLSRAYFVEVWKGVVLRGAGDTDANGYYback to top mRNA from alignment at E_fasciculatus_S2_contig7257:3900..7237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7257.15449.1 ID=mRNA_E_fasciculatus_S2_contig7257.15449.1|Name=mRNA_E_fasciculatus_S2_contig7257.15449.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3338bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7257:3900..7237+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7257:3900..7237+ >mRNA_E_fasciculatus_S2_contig7257.15449.1 ID=mRNA_E_fasciculatus_S2_contig7257.15449.1|Name=mRNA_E_fasciculatus_S2_contig7257.15449.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=834bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7257:3900..7237+ (Ectocarpus fasciculatus EfasUO2)back to top |