mRNA_E_fasciculatus_S2_contig7226.15405.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7226.15405.1
Unique NamemRNA_E_fasciculatus_S2_contig7226.15405.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z8_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.250e-58
Identity = 114/197 (57.87%), Postives = 131/197 (66.50%), Query Frame = -1
Query:    1 DLVGSFLGTTPLLTAAANNHLGVVEKLLAAGAGRQRCRPNLDDWAAFRVAAKNGHATILKAFLATGTQMVAANGNRWTALHSAASGKGSLDNGAAVRVLLEAGAYVNAKAKTPSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTIGAAGH 591
            D  GSFLGTTPL+           ++ L AGA  +R  P L  +  F +AA+ GHA ILKAFL TGT++VAA+GN WTALH AASG  SLDN   +RVLLEAG  VNAKA   S   YTPLH+ V +R+AS+G + A         AR ERDQTPLHVA  RS VAAVELLLR G DE LTND+ DTPAD IGAA H
Sbjct:   74 DRAGSFLGTTPLVQRGRKQPPRCRQEALTAGADSRR--PTLGHYFPFDIAARRGHANILKAFLETGTEVVAADGNGWTALHGAASGIPSLDNRGTIRVLLEAGVNVNAKATCRS--LYTPLHLTVDYRVASVGMVGALLEGGADVNARAERDQTPLHVAGGRSNVAAVELLLRCGVDEKLTNDDGDTPADVIGAADH 266          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 9.780e-31
Identity = 78/159 (49.06%), Postives = 93/159 (58.49%), Query Frame = -1
Query:   16 RCRPNLDDWAAFRVAAKNGHATILKAFL-ATGTQMVAANGNRWTALHSAASGKGSL-DNGAAVRVLLEAGAYVNAKAKTPSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTI 486
            RC P         +AA  GHA +LKA L    +Q+   +G  W ALH AA   G + DNG AVRVLL AGA VN      +D+ +TPLH+AV  R  S GT+RA         AR   DQTPLH+AC+ + V  VELLLRWGADE LTN+   TPAD I
Sbjct:   83 RCSP-------LEIAAHGGHADVLKALLDKDSSQLDDTDGEGWAALHYAAVVDGPVRDNGDAVRVLLGAGADVNETNN--NDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVI 232          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Pfs, (NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.030e-27
Identity = 86/146 (58.90%), Postives = 97/146 (66.44%), Query Frame = -1
Query:    4 GHATILKAFLATGTQMV-AANGNRWTALHSAASGKGSL-DNGAAVRVLLEAGAYVNAKAKT-PSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTIGAAG 432
            G+A +LKAFL   ++ V A +G  WTALH AA    S+ DNG AVR LLEAGA VN K     SD+ +TPLHVAV  R+ASI  I  XXXXXXXXX     +QTPLHVAC    V+ VELLLRWGADE L N   DTPAD IG  G
Sbjct:  256 GNAAMLKAFLDKDSREVDATDGRGWTALHYAAYVDRSVHDNGDAVRALLEAGADVNVKTDAHASDDIFTPLHVAVNRRMASICMIXXXXXXXXXXXXXXXCNQTPLHVACMWGNVSGVELLLRWGADEMLKNHRADTPADEIGVWG 401          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.860e-27
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = -1
Query:   13 WTALHSAASGKGSLDNGAAVRVLLEAGAYVNAKAKTPSDN-RYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTIG 363
            +TA+H A +  G LDNGA VR+LLEAG  VNA+  T  D  R+TPLH AV  RIASI T  A         A G+   TPLHVAC  S VAAVELLLRWGADET +ND  D PAD IG
Sbjct:  277 YTAIHCAVNRHGPLDNGAVVRLLLEAGGGVNAE--TGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIG 392          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: MHC_I (C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.070e-26
Identity = 78/145 (53.79%), Postives = 89/145 (61.38%), Query Frame = -1
Query:    4 TILKAFLATGTQMVAANGNR-WTALHSAA----SGKGSLDNGAAVRVLLEAGAYVNAKAKTPSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTIGAAG 423
            TI+KAFL T T +V A  +  +TALH AA     G+   D G AVRVLL AGA V+AK  T    R  PLH+AV  R+ S GTIRA          R   D+TPLH AC  S VAAVELLLRWGADE LT+D   TPAD IG +G
Sbjct:  257 TIVKAFLDTDTSLVNATDHYGYTALHHAALIEVHGR---DKGDAVRVLLAAGADVHAKT-TDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSG 397          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.060e-25
Identity = 67/117 (57.26%), Postives = 77/117 (65.81%), Query Frame = -1
Query:   10 ALHSAASGKGSL-DNGAAVRVLLEAGAYVNAKAKTPSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTIGA 357
            ALH AAS  G + D G AVRVLL AG  VN    T +D+ +TPLHVAV  RIAS GTIRA         +R   DQTPLH+AC+ + V+ VELLLRWGADE LTN+  D PAD I A
Sbjct:   45 ALHYAASVVGPVHDKGDAVRVLLGAGVDVNVN--TTTDSCFTPLHVAVDGRIASDGTIRALLEGADVD-SRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRA 158          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.730e-25
Identity = 75/160 (46.88%), Postives = 91/160 (56.88%), Query Frame = -1
Query:   13 RCRPNLDDWAAFRVAAKNGHATILKAFL-ATGTQMVAANGNRWTALHSAASGKGSL-DNGAAVRVLLEAGAYVNAKAKTPSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTIG 486
            RC P         +AA  GHA +LKA L    +++  AN   W ALH  AS   ++ D G AVRVLL AGA VN K    +D+  TPLH+AV   + S GTI A         AR   D TPLH+AC R   + VELLLRWGADE L N++ DTPAD +G
Sbjct:  245 RCSP-------LEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGT--NDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVG 395          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.220e-23
Identity = 61/103 (59.22%), Postives = 65/103 (63.11%), Query Frame = -1
Query:   16 LDNGAAVRVLLEAGAYVNAKAKTPSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTI 324
            LDNG  VRVLLEAGA V+AK  T   N  TPLH AV  RIA IG IRA         AR   DQTPLHVAC RS V  VE LL WGADE LT+ + +TPA  I
Sbjct:   35 LDNGDTVRVLLEAGADVDAKT-TGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAI 136          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.480e-22
Identity = 90/184 (48.91%), Postives = 101/184 (54.89%), Query Frame = -1
Query:   10 LTAAANNHLGVVEKLLAAGAG-RQRCRPNLDDWAAFRVAAKNGHATILKAFLATGTQMVAANGNRWTALHSAASGKGSL-DNGAAVRVLLEAGAYVNAKAKTPSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTIGA 555
            L   ANNHL  V++LLAAGA    RC       ++  +AA  GHA +L A L                +  A S  G + DNG AVR LL  GA VNAK  T      +PLH+AV  RIAS G I  XXXXXXXXX     D  PLH+ACR S V  VELLLRWGADE LTN    TPAD I A
Sbjct:  188 LLLGANNHLEAVQELLAAGANCGLRCMLTNGSHSSLDMAAGRGHADVLTALLDKDN------------IFFAMSVDGPVHDNGDAVRALLGVGADVNAK--TTDSICASPLHLAVDRRIASDGMIXXXXXXXXXXXXXXGDDNKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRA 357          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.710e-21
Identity = 70/127 (55.12%), Postives = 78/127 (61.42%), Query Frame = -1
Query:   13 VAANGNRWT--ALHSAASGKGSL-DNGAAVRVLLEAGAYVNAKAKTPSDNRYTPLHVAVGFRIASIGTIRAXXXXXXXXXARGERDQTPLHVACRRSGVAAVELLLRWGADETLTNDERDTPADTIG 384
            VAANG      ALH AA    ++ DNG AVR LL AGA VN +A   ++  +TPLH+A   RIAS GTIRA         A  E D+TPLH AC    VA VELLL WGADE LTND  DTPAD IG
Sbjct:  170 VAANGGHGNVAALHCAAVFVVAVRDNGDAVRALLGAGADVNVEAT--NNICFTPLHLAACHRIASDGTIRALLEGGANINACTE-DETPLHEACWHLSVAGVELLLHWGADEKLTNDVGDTPADVIG 293          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7226.15405.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Similar1.250e-5857.87to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosu... [more]
Uncharacterized9.780e-3149.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Pfs,1.030e-2758.90NACHT and Ankyrin domain protein n=1 Tax=Ectocarpu... [more]
Uncharacterized1.860e-2758.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
MHC_I3.070e-2653.79C-terminus family protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.060e-2557.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin1.730e-2546.88repeat protein n=2 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized2.220e-2359.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.480e-2248.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.710e-2155.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7226contigE_fasciculatus_S2_contig7226:3659..4252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842385.8594391-CDS-E_fasciculatus_S2_contig7226:3658..40121696842385.8594391-CDS-E_fasciculatus_S2_contig7226:3658..4012Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7226 3659..4012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842385.8705478-UTR-E_fasciculatus_S2_contig7226:4012..42521696842385.8705478-UTR-E_fasciculatus_S2_contig7226:4012..4252Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7226 4013..4252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7226.15405.1prot_E_fasciculatus_S2_contig7226.15405.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7226 3659..4012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7226.15405.1

>prot_E_fasciculatus_S2_contig7226.15405.1 ID=prot_E_fasciculatus_S2_contig7226.15405.1|Name=mRNA_E_fasciculatus_S2_contig7226.15405.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
MTCCSYRVCGRISFVVRERFICPPPQQKLYSRHTRTPASYVQWCLVAFTA
RVDVGPSLQQCANRADRCYPKTNRYMERRVPIVAGGLGLGVDISPSFQQN
TDSSAVVKGTFAGCSTV*
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mRNA from alignment at E_fasciculatus_S2_contig7226:3659..4252+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7226.15405.1 ID=mRNA_E_fasciculatus_S2_contig7226.15405.1|Name=mRNA_E_fasciculatus_S2_contig7226.15405.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=594bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7226:3659..4252+ (Ectocarpus fasciculatus EfasUO2)
ATGACCTGCTGCTCCTATCGTGTCTGCGGGCGTATCTCTTTCGTCGTTCG TGAGCGTTTCATCTGCCCCCCACCGCAGCAGAAGCTCTACAGCCGCCACA CCCGAACGCCTGCAAGCTACGTGCAATGGTGTCTGGTCGCGTTCACCGCG CGCGTTGACGTCGGCCCCTCCCTCCAACAGTGCGCGAATCGTGCCGATCG ATGCTATCCGAAAACCAACCGCTACATGGAGCGGCGTGTACCTATTGTCG CTGGGGGTCTTGGCCTTGGCGTTGACATAAGCCCCAGCTTCCAACAGAAC ACGGACAGCAGCGCCGTTGTCAAGGGAACCTTTGCCGGATGCAGCACTGT GTAGGGCTGTCCATCTGTTGCCATTGGCGGCGACCATTTGAGTGCCTGTT GCAAGGAAGGCTTTCAAGATCGTCGCGTGGCCATTCTTTGCAGCAACACG GAATGCAGCCCAGTCATCGAGGTTGGGTCGGCAACGCTGACGGCCGGCAC CTGCAGCCAAAAGCTTCTCGACAACACCGAGGTGGTTGTTTGCTGCGGCT GTCAACAGCGGCGTAGTACCCAGAAAACTGCCCACAAGGTCCGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7226:3659..4252+

>mRNA_E_fasciculatus_S2_contig7226.15405.1 ID=mRNA_E_fasciculatus_S2_contig7226.15405.1|Name=mRNA_E_fasciculatus_S2_contig7226.15405.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7226:3659..4252+ (Ectocarpus fasciculatus EfasUO2)
ATGACCTGCTGCTCCTATCGTGTCTGCGGGCGTATCTCTTTCGTCGTTCG
TGAGCGTTTCATCTGCCCCCCACCGCAGCAGAAGCTCTACAGCCGCCACA
CCCGAACGCCTGCAAGCTACGTGCAATGGTGTCTGGTCGCGTTCACCGCG
CGCGTTGACGTCGGCCCCTCCCTCCAACAGTGCGCGAATCGTGCCGATCG
ATGCTATCCGAAAACCAACCGCTACATGGAGCGGCGTGTACCTATTGTCG
CTGGGGGTCTTGGCCTTGGCGTTGACATAAGCCCCAGCTTCCAACAGAAC
ACGGACAGCAGCGCCGTTGTCAAGGGAACCTTTGCCGGATGCAGCACTGT
GTAG
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