mRNA_E_fasciculatus_S2_contig6969.15107.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6969.15107.1
Unique NamemRNA_E_fasciculatus_S2_contig6969.15107.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6969.15107.1 vs.
Match: RanBD1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.430e-19
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 VELMDPSEVINGEELEECTHKARGKLFRLVSKEWAEMGIGNLKV 132
            +ELMDPSEVINGEELEECTHKARGKLFRLV+KEWAEMGIGNLKV
Sbjct:  397 LELMDPSEVINGEELEECTHKARGKLFRLVNKEWAEMGIGNLKV 440
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BLAST of mRNA_E_fasciculatus_S2_contig6969.15107.1 vs.
Match: Putative (E3 SUMO-protein ligase RanBP2-like isoform X1 n=2 Tax=Penaeus vannamei TaxID=6689 RepID=A0A423TF12_PENVA)

HSP 1 Score: 50.4 bits (119), Expect = 1.030e-5
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 VELMDPSEVINGEELEECTHKARGKLFRLVSKEWAEMGIGNLKV 132
            + L D  +V+ GEE E C +  R KLFRL+S EW E GIG++K+
Sbjct: 1943 IPLPDKVDVVTGEEEETCLYSHRSKLFRLISGEWKERGIGDVKI 1986
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BLAST of mRNA_E_fasciculatus_S2_contig6969.15107.1 vs.
Match: LOW (QUALITY PROTEIN: E3 SUMO-protein ligase RanBP2-like n=19 Tax=Penaeus TaxID=133894 RepID=UPI000F6639C6)

HSP 1 Score: 50.4 bits (119), Expect = 1.030e-5
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 VELMDPSEVINGEELEECTHKARGKLFRLVSKEWAEMGIGNLKV 132
            + L D  +V+ GEE E C +  R KLFRL+S EW E GIG++K+
Sbjct: 2342 IPLPDKVDVVTGEEEETCLYSHRSKLFRLISGEWKERGIGDVKI 2385
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BLAST of mRNA_E_fasciculatus_S2_contig6969.15107.1 vs.
Match: E3 (SUMO-protein ligase RanBP2 n=13 Tax=pseudoobscura subgroup TaxID=32358 RepID=A0A6I8V3M0_DROPS)

HSP 1 Score: 50.1 bits (118), Expect = 1.410e-5
Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 VELMDPSEVINGEELEECTHKARGKLFRLVSKEWAEMGIGNLKV 132
            +EL D  EV  GEE EE     R KLFRLVS EW E GIGN+K+
Sbjct: 1347 IELPDEIEVRTGEEDEEVKFCFRAKLFRLVSLEWKERGIGNIKI 1390
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BLAST of mRNA_E_fasciculatus_S2_contig6969.15107.1 vs.
Match: E3 (SUMO-protein ligase RanBP2-like isoform X1 n=14 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70E815)

HSP 1 Score: 50.1 bits (118), Expect = 1.410e-5
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 VELMDPSEVINGEELEECTHKARGKLFRLVSKEWAEMGIGNLKV 132
            + L D  +V+ GEE E C +  R KLFRLVS EW E GIG++K+
Sbjct: 2175 IPLPDKVDVVTGEEEESCLYSHRCKLFRLVSGEWKERGIGDVKI 2218
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BLAST of mRNA_E_fasciculatus_S2_contig6969.15107.1 vs.
Match: Blast:E3 (SUMO-protein ligase RanBP2 n=3 Tax=obscura subgroup TaxID=32357 RepID=A0A3B0KJ85_DROGU)

HSP 1 Score: 48.1 bits (113), Expect = 6.750e-5
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:    1 VELMDPSEVINGEELEECTHKARGKLFRLVSKEWAEMGIGNLKV 132
            + L D  EV  GEE EE     R KLFRLVS EW E GIGN+K+
Sbjct: 1362 IALPDEIEVRTGEEDEEVKFCFRAKLFRLVSHEWKERGIGNIKI 1405
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6969.15107.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
RanBD11.430e-1995.45domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Putative1.030e-550.00E3 SUMO-protein ligase RanBP2-like isoform X1 n=2 ... [more]
LOW1.030e-550.00QUALITY PROTEIN: E3 SUMO-protein ligase RanBP2-lik... [more]
E31.410e-559.09SUMO-protein ligase RanBP2 n=13 Tax=pseudoobscura ... [more]
E31.410e-552.27SUMO-protein ligase RanBP2-like isoform X1 n=14 Ta... [more]
Blast:E36.750e-556.82SUMO-protein ligase RanBP2 n=3 Tax=obscura subgrou... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6969contigE_fasciculatus_S2_contig6969:672..842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionRan binding domain
Ec32 orthologEc-19_003750.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.28699-CDS-E_fasciculatus_S2_contig6969:671..8331696842354.28699-CDS-E_fasciculatus_S2_contig6969:671..833Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6969 672..833 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.2969427-UTR-E_fasciculatus_S2_contig6969:833..8421696842354.2969427-UTR-E_fasciculatus_S2_contig6969:833..842Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6969 834..842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6969.15107.1prot_E_fasciculatus_S2_contig6969.15107.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6969 672..833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6969.15107.1

>prot_E_fasciculatus_S2_contig6969.15107.1 ID=prot_E_fasciculatus_S2_contig6969.15107.1|Name=mRNA_E_fasciculatus_S2_contig6969.15107.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=54bp
MDPSEVINGEELEECTHKARGKLFRLVSKEWAEMGIGNLKVRAEEGGRRR
AWRR
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mRNA from alignment at E_fasciculatus_S2_contig6969:672..842-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6969.15107.1 ID=mRNA_E_fasciculatus_S2_contig6969.15107.1|Name=mRNA_E_fasciculatus_S2_contig6969.15107.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=171bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6969:672..842- (Ectocarpus fasciculatus EfasUO2)
GTGGAGTTGATGGACCCTTCCGAGGTGATTAACGGAGAGGAGCTGGAGGA
ATGCACCCACAAGGCGAGAGGGAAGCTGTTCCGGCTGGTTAGCAAGGAGT
GGGCTGAGATGGGGATCGGCAACTTGAAGGTGAGAGCGGAGGAGGGGGGG
AGGCGTAGAGCTTGGAGACGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6969:672..842-

>mRNA_E_fasciculatus_S2_contig6969.15107.1 ID=mRNA_E_fasciculatus_S2_contig6969.15107.1|Name=mRNA_E_fasciculatus_S2_contig6969.15107.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=162bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6969:672..842- (Ectocarpus fasciculatus EfasUO2)
ATGGACCCTTCCGAGGTGATTAACGGAGAGGAGCTGGAGGAATGCACCCA
CAAGGCGAGAGGGAAGCTGTTCCGGCTGGTTAGCAAGGAGTGGGCTGAGA
TGGGGATCGGCAACTTGAAGGTGAGAGCGGAGGAGGGGGGGAGGCGTAGA
GCTTGGAGACGT
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