mRNA_E_fasciculatus_S2_contig6910.15048.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6910.15048.1
Unique NamemRNA_E_fasciculatus_S2_contig6910.15048.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Villin (villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI9_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 5.060e-63
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDEPENAEF 318
            GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEV CSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDD+PENAEF
Sbjct:   73 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVACSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDDPENAEF 178          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB93_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.430e-39
Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDEPENAEF 318
            G+EYLPGGV+SGFNK+E+DV+ TRLLH+KGKR VRVSEVP S  SLN+GDVFILDAGLK+YL++GP +N YEK+KGVQ    I + +R  RA +  + + P++ EF
Sbjct:   69 GIEYLPGGVESGFNKVERDVYPTRLLHLKGKRTVRVSEVPLSRSSLNHGDVFILDAGLKIYLFNGPTSNNYEKAKGVQVASNINNDERGARAEIILVHENPKDEEF 174          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3BE30_9BACT)

HSP 1 Score: 140 bits (353), Expect = 1.800e-37
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDEPENAEF 318
            GV+YLPGGV+SGF K+EKDV+ TRLLH KGKR VRVS V  S  SLN GDVFILD GLK++L++GP AN +EK+KG++   RI   +R GRA + FLD +P NA+F
Sbjct:   70 GVQYLPGGVESGFRKVEKDVYETRLLHCKGKRTVRVSSVAVSKASLNRGDVFILDQGLKIFLFNGPGANKFEKAKGLEVASRINSDERGGRAELVFLDSDPRNADF 175          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBD4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.350e-36
Identity = 63/106 (59.43%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDEPENAEF 318
            G+EYLPGGVDSGFNK+E+DV+RTRLLH KGKR VR +E P  + SLN GDVFILD GL+LYL++G ++N YEK+KG + +Q+I + +R  R  +TF+D++P N  F
Sbjct:  110 GIEYLPGGVDSGFNKVERDVYRTRLLHCKGKRAVRCTERPVESGSLNKGDVFILDMGLELYLYNGCNSNKYEKTKGAEMVQKINN-ERGARCNITFIDEDPHNGAF 214          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Villin (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.910e-35
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDEPENAEF 318
            G+EYL GGV SGF K+E+D +RTRLL VKG+RV RV EVP S  SLN GDVFILDAGL LYL++G  A+  EKSKGV+++ RIKD +R GRA + F+ ++P NAEF
Sbjct:  114 GIEYLMGGVASGFRKVERDAYRTRLLQVKGRRVARVIEVPLSGSSLNTGDVFILDAGLTLYLYNGAGASRAEKSKGVETITRIKDDERGGRAQVVFIHEDPTNAEF 219          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPG3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.020e-35
Identity = 63/106 (59.43%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDEPENAEF 318
            G+EYLPGGVDSGFNK+E+DV+RTRLLH KGKR VR +E P  + SLN GDVFILD GL+LYL++G ++N YEK+KG + +Q+I + +R  R  +TF+D++P N  F
Sbjct:  110 GIEYLPGGVDSGFNKVERDVYRTRLLHCKGKRAVRCTERPVESGSLNKGDVFILDMGLELYLYNGCNSNKYEKTKGAEMVQKINN-ERGARCNITFIDEDPHNGAF 214          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Villin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.300e-34
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDEPENAEF 318
            GVEYLPGGV SGF K+E D +RTRLL VKGKRV R+SEVP ++ SLN GDVF+LDAGL LY++ G  A+  EK+KGV++  RIKD +R G+A +  + ++PEN EF
Sbjct:  108 GVEYLPGGVASGFVKVEPDTYRTRLLRVKGKRVARISEVPVASSSLNTGDVFVLDAGLALYVYVGAGASSAEKAKGVETAARIKDDERQGQAKVVLISEDPENKEF 213          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Gel (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812THK7_SYMMI)

HSP 1 Score: 128 bits (321), Expect = 1.260e-33
Identity = 59/106 (55.66%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDEPENAEF 318
            G+EYLPGGV+SGF  +++D + TRLL VKGKR VRV EVP S  SLN GDVFILD GLK+++++G  AN +EK+KG+    +I++ +R GRA +  LD++P N+EF
Sbjct:   72 GLEYLPGGVESGFRHVDRDSYTTRLLMVKGKRTVRVREVPLSNASLNTGDVFILDTGLKIFVYNGATANRHEKAKGIDVANKIRNEERGGRAEIFMLDEDPNNSEF 177          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: HP (domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZKU3_LOTGI)

HSP 1 Score: 127 bits (320), Expect = 4.690e-32
Identity = 55/99 (55.56%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDD 297
            G++YL GG++SGF K+E+DV+ TRLLH+KG+R VRV +V C   SLN GDVFILDAGL +Y+W+GP ++M EK KG +  +RIKD +R G+A +  +D+
Sbjct:  114 GIKYLEGGIESGFKKVERDVYETRLLHIKGRRNVRVRQVKCDVSSLNQGDVFILDAGLTIYIWNGPSSSMMEKIKGAEVAKRIKDEERGGKAQIYIIDE 212          
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZQB6_9EUPU)

HSP 1 Score: 118 bits (295), Expect = 1.790e-31
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGDVFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDD 297
            G++YL GGV+SGF K+E+  + TRL+HVKGK+ VRV +V C   SLN GDVFILD GL +++W GPD++  E+ K  +  +RIKD +R G+A +  LDD
Sbjct:   77 GIKYLEGGVESGFRKVERGKYETRLMHVKGKKNVRVKQVKCDVSSLNQGDVFILDCGLTIFVWIGPDSSNMERIKATEVARRIKDEERGGKAVVNILDD 175          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6910.15048.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Villin5.060e-6398.11villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Hypothetical3.430e-3962.26protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Uncharacterized1.800e-3762.26protein (Fragment) n=1 Tax=Verrucomicrobiaceae bac... [more]
Hypothetical1.350e-3659.43protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Villin1.910e-3563.21n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Y... [more]
Hypothetical5.020e-3559.43protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Villin-like3.300e-3460.38protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Gel1.260e-3355.66protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
HP4.690e-3255.56domain-containing protein n=1 Tax=Lottia gigantea ... [more]
Uncharacterized1.790e-3152.53protein (Fragment) n=1 Tax=Arion vulgaris TaxID=10... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6910contigE_fasciculatus_S2_contig6910:430..2254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score213.0
Seed ortholog evalue6.8e-53
Seed eggNOG ortholog2880.D7FSI9
Model size318
KEGG koko:K05761
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.actin filament capping
EggNOG OGsKOG0443@1,KOG0443@2759
Cds size318
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842348.6270678-CDS-E_fasciculatus_S2_contig6910:429..4951696842348.6270678-CDS-E_fasciculatus_S2_contig6910:429..495Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6910 430..495 -
1696842348.6396759-CDS-E_fasciculatus_S2_contig6910:1130..12681696842348.6396759-CDS-E_fasciculatus_S2_contig6910:1130..1268Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6910 1131..1268 -
1696842348.6520488-CDS-E_fasciculatus_S2_contig6910:2140..22541696842348.6520488-CDS-E_fasciculatus_S2_contig6910:2140..2254Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6910 2141..2254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6910.15048.1prot_E_fasciculatus_S2_contig6910.15048.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6910 430..2254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6910.15048.1

>prot_E_fasciculatus_S2_contig6910.15048.1 ID=prot_E_fasciculatus_S2_contig6910.15048.1|Name=mRNA_E_fasciculatus_S2_contig6910.15048.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=106bp
GVEYLPGGVDSGFNKMEKDVFRTRLLHVKGKRVVRVSEVPCSTDSLNNGD
VFILDAGLKLYLWSGPDANMYEKSKGVQSMQRIKDTDRAGRATMTFLDDE
PENAEF
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mRNA from alignment at E_fasciculatus_S2_contig6910:430..2254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6910.15048.1 ID=mRNA_E_fasciculatus_S2_contig6910.15048.1|Name=mRNA_E_fasciculatus_S2_contig6910.15048.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1825bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6910:430..2254- (Ectocarpus fasciculatus EfasUO2)
GGAGTTGAGTACCTCCCCGGGGGCGTGGACAGCGGATTCAACAAGATGGA GAAGGACGTCTTCCGCACCAGACTGCTACACGTCAAGGGCAAGCGCGTCG TGCGCGTGTCCGAGGTACATGCCGCATATGTTTTTTTTTTTTACTCCTAC AGTAGTAACTGCGTTTTTTCACGAGTAGCGCTGCCTGCTCGAACCCACTC TTCCCTTCACGTGCACCTCGCGATGCCACAATGCTCGTTCTTGTTGTTTG GACGATGATTGATCCACGAGTTCCTGGTGTGATTCCTTTGTATACTCCCT GTTTCTTCGATGGGTTGGGCTTTTATCGGATTGGGTGGTTTGCTTCACTT TGATCGGATTGGGTGGTTTGCTTCACCACTGTGTTGCCGCCTTGGTTGTC CAGTTCTTCTTCGCCAGAGGAGAAGTCGCTTGTCTTCCGCACAAGCCACG ATTATTGTTCCCCACGTCCACGCGACCACTTGCCGGCGTTTAGTAGAATA TTTCGCACCCTGCTACAATCCCGCAGTGTCGTTACCGTTGTCGGCTTTGT GCGTGTTGTGTTGTGTTCTGCTGCGTTGTGTTGTACTTGTTGTGTTGTGT TGTGTGGGGTCCCACAAGAGGGTATCAGACGTGGCTTCAGGTACCCTGCC CACCGGACATTCCCAGAAAACGAACGACGCCTTATCCCATGTCCTATACT GTATAGTCTAGGCGTCGCAGTCCCTGCTGCGAGCCTCCGCTCTTGAGATG CCTCCCATGCCCTACAAGGAGGCGCCACGACTCGTTCCGTGACCGCCGCC GCCCTTGTCTTGGCAAATCGGATTCTGCCTTACTTTCTCTTCATCCGTGC TCTTTCTGTTGTTGGACTGGGTCGGGTTTTGGCATCATGCACCAACTCTG CCTTTTTGTCTCGTCACTCATGTTCTGTTATTGTTGTTGTTGTTGTTGTT GGATCGGATTGGATTGGATCGGGGTTTGGCAATCAGGTTCCATGCTCGAC GGACAGCCTCAACAACGGAGACGTGTTCATCCTCGACGCGGGCCTGAAGC TCTACCTGTGGAGCGGGCCGGACGCCAACATGTACGAGAAGTCCAAGGGC GTGCAGAGCATGCAGCGCATCAAGGTCAGTAGTAACCTTTGCCCTTGTGG TTTGTGTTGGTGAGAACGGAAATTAGCATGCCTTGGAGGGCTTGGTCTTG TCTTGTTCTGGGGCTGCTTGCGAACCGGGCATATCCACCACAAAAAATGA AAAATGACGTCACCACACATCCAAACTTTGGAGGTGGTGGTGATGGTAGC GGTGTTGTTGGCGTGGTCGTTGGTGTATACTTTTGGCTGACTTTCTCGTG AAGGGCTCACGATGTTGATGGTACTGCTGTTGGTTGTGATGTTGATGGTA CTGCTGTTGGTTTGGTTGGTGATTTTGATTCTAGCTGTTTCGTTTGAAGG ACTCATAATGGCAGTGTTTGTTGTGATTGGTGTTAATTCGCTGGGTTTTG TGTTCGTTTGTTTGAAGGATGTACATACGTGACCGAGGAACGATTTGGTC GCTCGTCGGACCTAGAGCATGTACATTTTGTCTCCATGCGAGTTCGCGGC ACGCCGCGGGCAGTCCCTTACGGTGTCGTGCTTCTTCTGGCTTGCAGGGA GTTCGGAATAGAGCAACACACATCTCGGATTTGATTTTGGTTGTTTCGCC GCGCGGGAGTTCCAACGAAAATGCTTTCGGGATGAACGTCTCTCTTGACT ATTTGGCAGGACACGGACCGAGCGGGACGCGCGACGATGACCTTCTTGGA CGATGAGCCGGAGAATGCGGAGTTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6910:430..2254-

>mRNA_E_fasciculatus_S2_contig6910.15048.1 ID=mRNA_E_fasciculatus_S2_contig6910.15048.1|Name=mRNA_E_fasciculatus_S2_contig6910.15048.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=318bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6910:430..2254- (Ectocarpus fasciculatus EfasUO2)
GGAGTTGAGTACCTCCCCGGGGGCGTGGACAGCGGATTCAACAAGATGGA
GAAGGACGTCTTCCGCACCAGACTGCTACACGTCAAGGGCAAGCGCGTCG
TGCGCGTGTCCGAGGTTCCATGCTCGACGGACAGCCTCAACAACGGAGAC
GTGTTCATCCTCGACGCGGGCCTGAAGCTCTACCTGTGGAGCGGGCCGGA
CGCCAACATGTACGAGAAGTCCAAGGGCGTGCAGAGCATGCAGCGCATCA
AGGACACGGACCGAGCGGGACGCGCGACGATGACCTTCTTGGACGATGAG
CCGGAGAATGCGGAGTTC
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