mRNA_D-mesarthrocarpus_Contig1001.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1001.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig1001.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1001.2.1 vs. uniprot
Match: D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.970e-49
Identity = 98/172 (56.98%), Postives = 119/172 (69.19%), Query Frame = 3 
Query:  456 GHRTIELLPTDEQRQTLQKWFGVVRWTHNRAVDALRRDPEASKSSLWAAVAAAESDHSWVSAVPRAVRDDTVGELWAT-----------AAACGRV----------NEDALKYRTRKDRLEKVIIRASGFLGGVPYPEYFGRTPLAASELLPDRLPGDAILVRNCERFFLCV 908
            G++T+ELLPT +QRQTLQKWFGVVRW HNRAVDALR D   S +SL AAVA +ES+H W +AVP A+RD TV +L              AAA G               ALKYRTRKDRLE++++RA GF  G+PYP+YFG  PLA+S  +PDRLP DAILVR+ ERF+LC+
Sbjct:  226 GYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCI 397
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1001.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM4_ECTSI1.970e-4956.98HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1001contigD-mesarthrocarpus_Contig1001:13089..16335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1173022.Cri9333_2873
PFAMsHTH_OrfB_IS605,OrfB_IS605,OrfB_Zn_ribbon
Model size2529
Max annot lvl1117|Cyanobacteria
KEGG koko:K07496
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.38e-05
EggNOG OGsCOG0675@1|root,COG0675@2|Bacteria,1FZWK@1117|Cyanobacteria,1H7MR@1150|Oscillatoriales
Ec32 ortholog descriptionTransposase, putative, helix-turn-helix domain
Ec32 orthologEc-26_002150.1
DescriptionPutative transposase DNA-binding domain
Cds size750
COG categoryL
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.0909033-UTR-D-mesarthrocarpus_Contig1001:13088..146731680789147.0909033-UTR-D-mesarthrocarpus_Contig1001:13088..14673Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1001 13089..14673 -
1680789147.1426134-UTR-D-mesarthrocarpus_Contig1001:16141..163351680789147.1426134-UTR-D-mesarthrocarpus_Contig1001:16141..16335Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1001 16142..16335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.1087985-CDS-D-mesarthrocarpus_Contig1001:14673..148391680789147.1087985-CDS-D-mesarthrocarpus_Contig1001:14673..14839Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1001 14674..14839 -
1680789147.121199-CDS-D-mesarthrocarpus_Contig1001:15434..157001680789147.121199-CDS-D-mesarthrocarpus_Contig1001:15434..15700Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1001 15435..15700 -
1680789147.1328833-CDS-D-mesarthrocarpus_Contig1001:15823..161411680789147.1328833-CDS-D-mesarthrocarpus_Contig1001:15823..16141Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1001 15824..16141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1001.2.1prot_D-mesarthrocarpus_Contig1001.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1001 14674..16141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1001.2.1

>prot_D-mesarthrocarpus_Contig1001.2.1 ID=prot_D-mesarthrocarpus_Contig1001.2.1|Name=mRNA_D-mesarthrocarpus_Contig1001.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=250bp
MSHSGLMDFWSEPWTFETWSLWSSQGAASAGLSILNWKKGESSPWSSSTW
APPQGAAPLRETLRASNGGRQGARHPFGRECQIAPSTGHRTIELLPTDEQ
RQTLQKWFGVVRWTHNRAVDALRRDPEASKSSLWAAVAAAESDHSWVSAV
PRAVRDDTVGELWATAAACGRVNEDALKYRTRKDRLEKVIIRASGFLGGV
PYPEYFGRTPLAASELLPDRLPGDAILVRNCERFFLCVPNSWKDSPWLS*
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mRNA from alignment at D-mesarthrocarpus_Contig1001:13089..16335-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1001.2.1 ID=mRNA_D-mesarthrocarpus_Contig1001.2.1|Name=mRNA_D-mesarthrocarpus_Contig1001.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3247bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1001:13089..16335- (Discosporangium mesarthrocarpum MT17_79)
ACGCTGTGCATATGTGCAGCCGATTTTTTGAATTGTCAGCAACTAAACGA
TAGCGGAACGCTACGGTCGAGACCCGAGAGGCTAACGAGTAACCGCAGGG
TAAGCCGCAGGGGTCAAGACTGTGAACCTCCGCACCTTCAGTGCTGGCTA
GGTCCCTATTCGTGACGTTAAGGTACTGGTCATCAAAGCACGATATGTCT
CACAGCGGGCTGATGGATTTTTGGAGCGAGCCGTGGACCTTCGAAACGTG
GAGCCTATGGTCTAGTCAAGGCGCGGCCTCTGCTGGCCTGAGCATTTTGA
ATTGGAAAAAAGGGGAGTCTTCACCCTGGTCCAGTAGCACCTGGGCCCCG
CCACAAGGCGCAGCCCCGTTAAGGGAAACTCTCCGGGCGAGCAACGGTGG
TCGACAAGGCGCTCGGCACCCGTTCGGGCGGGAATGCCAAATCGCACCAA
GCACTGGACACCGCACAATCGAGCTGCTCCCTACGGACGAACAGCGCCAG
ACCCTTCAGAAGGTGGGCATACATGCCTGCTATTCGTGTCCTCTCGCGCG
CTTGTACTTCCAACACAATATCCACATTCTTACCACCTCACACCCAACAT
ACCAACGTCCATGGCCGCCACTTCCCCGTACACAGTGGTTTGGTGTGGTC
CGTTGGACCCATAACCGAGCCGTTGACGCTCTCCGCCGCGACCCTGAAGC
TAGTAAGAGCAGCCTTTGGGCAGCCGTTGCTGCAGCCGAGTCGGATCACT
CTTGGGTATCCGCTGTGCCACGAGCTGTTAGAGATGACACTGTGGGCGAG
CTTTGGGCGACGGCGGCTGCTTGCGGAAGGGTGAATGAGGATGCACTCAA
GTACCGCACGAGGAAGGACCGCCTTGAGAAAGTCATTATTCGTGCCTCGG
GGTGAGTGCAGCCAGTGCTCTCGGCTCGCGTATATGTGGAATGTTGGTAT
CTTTCCGGTCTAAGAGTGAAAAAAGAGAGCAAATGGGCAATGCTTCGCTC
GAGGTGGACAGAACAGAATATGTTACCCAAGCCAAACTATTTCCTCACGA
CTGAATACCTTGCCGAGACTGGAACACGTGCATCCAGATTTGAAATATAC
GTTGGCCTATTTTCTTGCTTGTATAGTAAAGGAGGCCACAAGACCATTCA
TAACGTCGATCAAATGAGTTCCTGGCAAGTAAGGCATCTTGTGGTATTGT
TGTACTGTAGCACACCGTAACACCTATACTCTACATATCTCAGTTTCGAG
TGCAAGTGGACAAGTTCTCAGAGTCTAACAGCAAGGTACTCGGGATGACC
ATTATTGTGCAAAACGACTCGAACATCTTTTCACGAAAGATATGGCAGGG
AGAGAGAGTATGCTGTCTGTCACGCAGAGTATGAGCTTGAGAGAACATGA
ACAAAGGAGTATGAAACAGTGTACATAAAGAGACGACACACCAGCTGCCG
TATTGCCTGCCTGCTTGCCCTCCCTTTTCTCCCTCCCTCACAACAGCTTT
CTCGGGGGAGTCCCCTACCCGGAGTACTTTGGTCGTACCCCTCTGGCTGC
TTCTGAGTTACTCCCCGACAGGCTTCCCGGGGATGCTATCCTTGTCCGCA
ACTGTGAGCGATTCTTCTTGTGTGTCCCCAACTCCTGGAAGGACAGCCCC
TGGTTGAGCTGAGCGTCCTCCATGGTTTGAGGATGTGCCTTGTAGGGAGA
ACTGGGGTTGTGTGTTGATGGGGAGGGGGAGAGTTGCGGTAGGCCGAGCA
ACCCATGGTTTGGCCTTGACCTGTGCCCTTCTGGACTGCCTCCCTTTTTA
CTGTTATTTCCCCATCCCCACCTTCTCCTTTGTGAGTCTCCTTACTTCAT
CTGATTGCCCTTTAGATTGTGCTGGAATCTTGTTGGTACATTATTTTTTG
AATATATTAATGCATTCCCTCCAGTTTGCTTCAGATTTGTGCCCCAGAGC
CCTTCTCACTGAGTTAGGGAACCATACACAGTTAGTTGGTGCAAATAAAT
CTTTAAAAGTTGGACAACCGTCAGACCTGGGACACTGCAACAAGCACAAC
TTTGGGGGGGTGCAGAGGGTTGGGGTTAGGACCAAGAGTATGGGGAGCAG
GAGACAGATGTACAGTTCCTCGGCCATGGTCCCCCCAGGAGGATGCACTC
TTGTCAAGCACAATGCAAGTACAAAAGAGAAAATGTTGCTGATTGCTGCT
GGGGTGAACCCGGGGACACAGGGGTGAGTAGGTTGGGGGGGACCTCAGGC
TGGTGCAGAGACACTGCCTACCCTACATGGCCTTTGGGCCTTGAGGACGG
TGTTCTGTCGTCACATCATTGTACAGGGGTAAAGGACCAGCTAGTCCAGG
CAGGTCAACAGGAAGTGGTCAATGGTAGGCCGGGGTTGCTCCACGACCAC
CCAGCCTGGATAATTTGTTGTGTTTGCCGAGAAGTTGAGAATCTGCATTG
CTCACCTCGGGGATTTCTTTCTGCTGCCATTTGCAGTGCGCTGCTCGAGC
TGGGGAGGGGAGGGGACTTTTTCATGGAAAGATTGTATTTTGATTTTTTG
AAATTGTTGGGGAGGAGAACAAGTGTACACAGGGGAGAGGAGAGCAAGGG
TTCATGATTTTTGTTTTTGGTTGGGCGGTAGGATAAGAGGCACACCACGC
CTCTTTTTTGGCAGAGACTTAGTTGATGTGTGAGGCACAGATTACTGTGT
GCGAGACTGGGGAACTTCTGTGTTCCACATAGCATGGGGCGCCCCCCCCT
ACTCTCTGCTTCACTATCGATGAAATGTTCCCTGAAGACTTAGGGTTGTG
TGTGTGACAGGTCATTGGTAGATGGTAATGATAGTATGGTGGGAGAGGGT
CGGGCTTTCAGCGACTGGTGACTGGTGACGACCTAGGAGCATTATGGATA
ATTGTTTGATGTTTGTTAGGAGCACTCACTCAGGAGAACGCCTGAGTTGG
CTGGAAAATTGACTGAGCAAAGATGAGAGGAGGGGTTACAGACTGGGTGC
AGTACGCTGGCAGTGTGAATGAGTTGGGATGTGATGTTGCTTGCAATGGG
GCGGCGGGAAATATGCACAAGGTGTACCTTGTGGGGAAGGCCGGTGGACA
GATTTGATGTGCATGACAAGAACACACAGTTTGCACATCTGTATTTGTAG
GGCTAGGGCTGTGTCTTGACATTTAATCGGTCAGAGGTGTAAAACTAATA
TACATCACACATACATGTGGTGTGTCAATAATACATGCATTATCCAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1001:13089..16335-

>mRNA_D-mesarthrocarpus_Contig1001.2.1 ID=mRNA_D-mesarthrocarpus_Contig1001.2.1|Name=mRNA_D-mesarthrocarpus_Contig1001.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=750bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1001:13089..16335- (Discosporangium mesarthrocarpum MT17_79)
ATGTCTCACAGCGGGCTGATGGATTTTTGGAGCGAGCCGTGGACCTTCGA
AACGTGGAGCCTATGGTCTAGTCAAGGCGCGGCCTCTGCTGGCCTGAGCA
TTTTGAATTGGAAAAAAGGGGAGTCTTCACCCTGGTCCAGTAGCACCTGG
GCCCCGCCACAAGGCGCAGCCCCGTTAAGGGAAACTCTCCGGGCGAGCAA
CGGTGGTCGACAAGGCGCTCGGCACCCGTTCGGGCGGGAATGCCAAATCG
CACCAAGCACTGGACACCGCACAATCGAGCTGCTCCCTACGGACGAACAG
CGCCAGACCCTTCAGAAGTGGTTTGGTGTGGTCCGTTGGACCCATAACCG
AGCCGTTGACGCTCTCCGCCGCGACCCTGAAGCTAGTAAGAGCAGCCTTT
GGGCAGCCGTTGCTGCAGCCGAGTCGGATCACTCTTGGGTATCCGCTGTG
CCACGAGCTGTTAGAGATGACACTGTGGGCGAGCTTTGGGCGACGGCGGC
TGCTTGCGGAAGGGTGAATGAGGATGCACTCAAGTACCGCACGAGGAAGG
ACCGCCTTGAGAAAGTCATTATTCGTGCCTCGGGCTTTCTCGGGGGAGTC
CCCTACCCGGAGTACTTTGGTCGTACCCCTCTGGCTGCTTCTGAGTTACT
CCCCGACAGGCTTCCCGGGGATGCTATCCTTGTCCGCAACTGTGAGCGAT
TCTTCTTGTGTGTCCCCAACTCCTGGAAGGACAGCCCCTGGTTGAGCTGA
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