mRNA_D-mesarthrocarpus_Contig1036.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1036.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig1036.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1036.1.1 vs. uniprot
Match: D7G7C4_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C4_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.920e-31
Identity = 71/111 (63.96%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:  517 ELKL-PSGPSLSLRMKKTTAYTPSPASEFKARERQEPADLPHCSVCATPFALLVRRQRCQVCGESVCAQCSLDRRYVEGQKGLQRVCDICIVEGPIVFSGAGDEESLSAGS 846
            +LKL PSG S +LR+KK   +TPSP SEFK+RERQ+  D P C VCA PF L++RRQRC VC +SVCA CS D+R+VEGQKGLQRVCDICIVEGP+V     DE  + A S
Sbjct:   46 DLKLRPSGTSRTLRLKKQAQFTPSP-SEFKSRERQDVVDQPFCGVCAAPFTLMMRRQRCAVCADSVCAPCSSDKRHVEGQKGLQRVCDICIVEGPVVL----DENGMYAAS 151
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1036.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7C4_ECTSI2.920e-3163.96FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1036contigD-mesarthrocarpus_Contig1036:536..4227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008869772.1
PFAMsFYVE
Model size1230
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.54e-07
EggNOG OGsKOG1819@1|root,KOG1819@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-04_003330.1
Descriptionnegative regulation of epidermal growth factor-activated receptor activity
Cds size1227
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789175.2672238-CDS-D-mesarthrocarpus_Contig1036:536..10151680789175.2672238-CDS-D-mesarthrocarpus_Contig1036:536..1015Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1036 537..1015 -
1680789175.278531-CDS-D-mesarthrocarpus_Contig1036:2600..27201680789175.278531-CDS-D-mesarthrocarpus_Contig1036:2600..2720Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1036 2601..2720 -
1680789175.2875612-CDS-D-mesarthrocarpus_Contig1036:3398..36811680789175.2875612-CDS-D-mesarthrocarpus_Contig1036:3398..3681Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1036 3399..3681 -
1680789175.2988982-CDS-D-mesarthrocarpus_Contig1036:3882..42271680789175.2988982-CDS-D-mesarthrocarpus_Contig1036:3882..4227Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1036 3883..4227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1036.1.1prot_D-mesarthrocarpus_Contig1036.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1036 537..4227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1036.1.1

>prot_D-mesarthrocarpus_Contig1036.1.1 ID=prot_D-mesarthrocarpus_Contig1036.1.1|Name=mRNA_D-mesarthrocarpus_Contig1036.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=409bp
CPLNSQFQCKAYGTGTLFSTAAYIKRGVPGNNRGLDMGGFRKRAPKSPAI
KDAGGKSGGGDKGRKSKPKNETKKEDNANGKADKKTKDRDVVGRDSPARR
RSLLGIASMRDVFEQVQDSLTKSRHADGSGGARSHGISSSPQRGQPASPG
ATATEVGTVNGWISPPQKKKALELKLPSGPSLSLRMKKTTAYTPSPASEF
KARERQEPADLPHCSVCATPFALLVRRQRCQVCGESVCAQCSLDRRYVEG
QKGLQRVCDICIVEGPIVFSGAGDEESLSAGSLTASWLYPSPSPAHGSLM
ASSPAAFTAGVTAGAAALGASPTLLTPGHPYPHPHLRDNGASGGDGGPLL
ALPPKVLGDGLGPADPTVGLGRGGGNVVGVEASAHGLGMGAEAVAGPGSG
PGPGAGAWA
back to top

mRNA from alignment at D-mesarthrocarpus_Contig1036:536..4227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1036.1.1 ID=mRNA_D-mesarthrocarpus_Contig1036.1.1|Name=mRNA_D-mesarthrocarpus_Contig1036.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3692bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1036:536..4227- (Discosporangium mesarthrocarpum MT17_79)
TGTCCTCTCAACTCTCAATTCCAGTGCAAGGCATACGGAACAGGAACGCT
GTTTTCGACAGCGGCATATATCAAGCGTGGTGTACCCGGGAATAACAGGG
GACTTGATATGGGAGGTTTCAGGAAGAGGGCTCCTAAGTCCCCGGCGATC
AAAGATGCAGGTGGCAAGTCTGGCGGAGGAGACAAGGGTAGGAAAAGTAA
GCCGAAGAACGAGACCAAAAAGGAGGATAATGCCAACGGCAAGGCGGACA
AGAAAACAAAGGATCGCGATGTCGTGGGTCGTGACAGCCCGGCTCGTCGG
CGAAGTCTGCTGGGGATTGCCTCTATGCGAGATGTATTCGAGCAGGTGTG
TAAAGAGATATGGCCGTAATGATGAACCCTCCACGTACTTCATACAGCCC
TGTATCCCCCCAGTGGGGCTGCACCGCCGCAAAGTTCACCCAATTCTTGC
AAAGCCAACAAACAGGTCGTCAAACCCTTACAAACCAACAAGCTTCTCAA
TATTTCCACTCGCTCCTCGTATTTTCGTGTGGGATCGCCATGGAAGGTGC
AAGACTCCCTCACAAAAAGCCGGCACGCCGACGGCTCTGGCGGAGCAAGA
TCACATGGGATCTCGTCATCACCCCAGCGAGGTCAGCCGGCAAGTCCGGG
GGCAACGGCCACAGAGGTGGGGACAGTGAATGGATGGATTTCTCCTCCCC
AGAAGAAGAAGGCGCTAGAGTTGAAACTGCCGTCAGGCCCTTCCCTCTCC
CTGAGGATGAAAAAGACGACGGCCTATACCCCGTCACCTGCCTCGGAGTT
TAAGGCCCGCGAGCGACAGGAACCTGCAGGTGTGTTGATTGGTCGAGTCT
GTGGCCGCTGCAGGAGTTCTCTCGTCCGGTCTTGCACAGTAGAGAGAACG
TTCTTATTCCATTGTCGCAGCTCTCTGAAGATTTGCCCAACCCGGAACGT
TTATGTTTTTTGTGTGCGGCAAGTACACTAGAGCAAGATTATTTGTCCTT
GCACTGCTTGTTTGGCGTTTTGAGGGAGGGTCGGTGTTAGTGTCTACGAT
CTGTCCGGAAATAGATGCAGTATTTTGAACTCGTATACGTTGCTTCGAAG
TACGTTTTTCCCCCCCACCACCTCGGTCGGGCATTTACTCTGAGATTGTC
AAGCCCTTCTCTGACTTTGGTTCATGCTCTACGCTCCATGCGTGATGTTT
TTTTTTTTTTGAAGGTTCGGTCTGAACGGGCAAAACCGGGTCTCATTTGC
GAAAATGATTCTCCTACGTGGCACGCACCATGCTCTACCCCTGTAAAACG
CACAGCGCTCTACCAAGTTCCCATACTCACGACCTTCATGTAGACTGTGT
ACCTGTGATGTGGGTGTGTGCTTTACCGAGGTCATAAGTCATTCCACTTG
TCCTCCCAACCCCAGGACAATTTCCTTAACCAAGAGCCCCGCTTCTCTCA
CCACTCCCTCCTCCCTCCCCTCCTCCCCTCCCCCGGTGCACATCCCTTAT
CCGCCAGACCTCCCCCATTGCAGTGTGTGCGCCACCCCCTTTGCCTTGCT
TGTGCGGCGCCAACGGTGTCAAGTCTGTGGGGAAAGCGTGTGTGCCCAGT
GCTCCCTTGACAGGCGTTATGTGGAAGGTTTGTTTGAAGCATGTGCCTGG
CAATTGAAGTCCTTTTCCATCCCATTCCATTTAACAAAAAAACTATTACG
AGATCTACACTAGGTGGTTAGCCCCTATATTCTTCCCTCTTGACACCTTC
CCGCATCTTGTTTCTAGTTTCTTTTTTTTTTTTCTCTTTCGTTCTGGTGT
GGCAGTACTCCCATTTAATCTATCACACCACCCTGTGCACCTACTGCAGG
ATAGATGAATGATTTGGTGCAGCCAGGTGTTGTGTAGTCAGGTGATGTTG
TTGATTGTGATTTACTGGTCTCATTGATGGCAACTGGATACCAATTAGCG
ACCGATGGTTTAGAGGGTTTAACGTACATGCCAACAGGACACATTTCATA
TTCTCATTTTTTTCCTTTTTGCACTTCACACTTCACAACTTCAGTTGAAC
AGTCACCTATCTTTGTACCTTGTAAGGGACCACCGTACACATGAGGGAGT
TACGCCTGCCATCTCAAATAGTGGGGTTATTTCAGCACCTTGTCAAGGTG
TTTTTTGCCTGCTGGAAAACCCATTGATCAACACCCCGCTGATCCTATCA
GCAAAAATGTTAGTGCTATTTCTTTATGCTGACTGTAACAATCACCCCTG
ATTCATGACCCTAAACACACCACATGCAGAGTCCTAGGTTGTTTACGCAA
ATCCCTTTGCAGCTGTTACCTTGTCCCAGGTAGTGTGGGCAAGGGTACCC
CTCATTATTAGGAAGCAACAGACACGTCAACAGAGTGGGCTCTTCTTCTC
AACAGATGTTTTCTATGCTTGCTGTTTTCTGTCTTACTGGCGTGTTTTCT
TTCTGCTGCCTTTTTCCGTGTGCTGCTTAGAAGAATTTGCATTATCCATA
GGCATATTCTCCATACTGCTTAAAGCTTACTGGATGATATCATCCGCATT
ATCCATAGGCATATTCTCCATACTGCTTAAAGCTTATTGGATGACATCAT
CCGCATTATCCATACTGCTTAAAGCTTGTTGGATGACATCCACCTTTGCA
GTCGGACCAGGCCACTCACTCATAGGGCACTTTGTGACCCTGCTGCTCCC
GGTGCTGTACACACCACTACACACACGACCGCCGGCCCTCAACCTCATCC
TAACCACAACTTCCATTTCATGTCTGGTTTCCCCGTCCCCCTACCAAAAA
AGATCCAAGAAAAAGGTCACTGGTCAGTCAATGTCCTTGCCTCCGCCCAA
TCGATATCTATCGCCACTCCACAAAATCCCATCCTATCCGATAAAATTCT
GCCTTTTTTATTTTTACCAAGTTTTGTACAATCATTTTATACTTCATATT
TCATTCTTCATTCTTCAATCTTTATACTTTCATCCTTTGTGGTTTTTTAA
TTGAATTAGTTATTGCGTGCTTGCCACAGAAGCTTGTACTGCACTAAGCA
TGACCGTAGTAACACGTCAAGATTGCAGCTCTTCTGTTGACAGCAGCTCT
TCTGTTGACAACATCTGTGATCCCTGCTATGTTGTTCTTATCTTCTTCCT
TCCTTCCTTCCTTCCTTTCCCTGTGCCTGATTACAATTGTGTCACCCCCC
TCCCCCCCACAGGTCAAAAGGGCCTGCAGCGGGTATGTGATATATGCATT
GTTGAAGGCCCCATTGTCTTCAGCGGTGCGGGAGACGAGGAGAGCTTATC
AGCTGGTAGCTTAACCGCCTCCTGGCTGTACCCCTCCCCCTCCCCGGCCC
ATGGCTCCCTCATGGCCTCATCCCCTGCGGCCTTCACTGCTGGGGTCACT
GCTGGGGCCGCTGCTCTGGGTGCCTCTCCTACCCTCCTCACCCCCGGCCA
CCCCTACCCCCACCCCCACCTCCGTGACAATGGCGCCAGTGGGGGCGATG
GTGGACCGCTGCTGGCACTGCCCCCCAAGGTCCTGGGGGACGGCTTGGGC
CCAGCTGATCCCACAGTGGGTCTTGGGAGAGGAGGCGGGAATGTCGTTGG
GGTAGAGGCATCAGCACATGGCCTTGGGATGGGAGCCGAGGCTGTGGCCG
GGCCCGGGTCCGGGCCCGGCCCCGGGGCAGGGGCATGGGCAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1036:536..4227-

>mRNA_D-mesarthrocarpus_Contig1036.1.1 ID=mRNA_D-mesarthrocarpus_Contig1036.1.1|Name=mRNA_D-mesarthrocarpus_Contig1036.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1227bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1036:536..4227- (Discosporangium mesarthrocarpum MT17_79)
TGTCCTCTCAACTCTCAATTCCAGTGCAAGGCATACGGAACAGGAACGCT
GTTTTCGACAGCGGCATATATCAAGCGTGGTGTACCCGGGAATAACAGGG
GACTTGATATGGGAGGTTTCAGGAAGAGGGCTCCTAAGTCCCCGGCGATC
AAAGATGCAGGTGGCAAGTCTGGCGGAGGAGACAAGGGTAGGAAAAGTAA
GCCGAAGAACGAGACCAAAAAGGAGGATAATGCCAACGGCAAGGCGGACA
AGAAAACAAAGGATCGCGATGTCGTGGGTCGTGACAGCCCGGCTCGTCGG
CGAAGTCTGCTGGGGATTGCCTCTATGCGAGATGTATTCGAGCAGGTGCA
AGACTCCCTCACAAAAAGCCGGCACGCCGACGGCTCTGGCGGAGCAAGAT
CACATGGGATCTCGTCATCACCCCAGCGAGGTCAGCCGGCAAGTCCGGGG
GCAACGGCCACAGAGGTGGGGACAGTGAATGGATGGATTTCTCCTCCCCA
GAAGAAGAAGGCGCTAGAGTTGAAACTGCCGTCAGGCCCTTCCCTCTCCC
TGAGGATGAAAAAGACGACGGCCTATACCCCGTCACCTGCCTCGGAGTTT
AAGGCCCGCGAGCGACAGGAACCTGCAGACCTCCCCCATTGCAGTGTGTG
CGCCACCCCCTTTGCCTTGCTTGTGCGGCGCCAACGGTGTCAAGTCTGTG
GGGAAAGCGTGTGTGCCCAGTGCTCCCTTGACAGGCGTTATGTGGAAGGT
CAAAAGGGCCTGCAGCGGGTATGTGATATATGCATTGTTGAAGGCCCCAT
TGTCTTCAGCGGTGCGGGAGACGAGGAGAGCTTATCAGCTGGTAGCTTAA
CCGCCTCCTGGCTGTACCCCTCCCCCTCCCCGGCCCATGGCTCCCTCATG
GCCTCATCCCCTGCGGCCTTCACTGCTGGGGTCACTGCTGGGGCCGCTGC
TCTGGGTGCCTCTCCTACCCTCCTCACCCCCGGCCACCCCTACCCCCACC
CCCACCTCCGTGACAATGGCGCCAGTGGGGGCGATGGTGGACCGCTGCTG
GCACTGCCCCCCAAGGTCCTGGGGGACGGCTTGGGCCCAGCTGATCCCAC
AGTGGGTCTTGGGAGAGGAGGCGGGAATGTCGTTGGGGTAGAGGCATCAG
CACATGGCCTTGGGATGGGAGCCGAGGCTGTGGCCGGGCCCGGGTCCGGG
CCCGGCCCCGGGGCAGGGGCATGGGCA
back to top