Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10006.1.1 vs. uniprot
Match:
D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)
HSP 1 Score: 55.1 bits (131), Expect = 4.340e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 403 TKDLALEALAEYLLDHPHHALGMELGVDDGPLLPGTFTPM 522
TKD+ALEAL ++L+D+P +G+ELG D PLLPGT PM
Sbjct: 702 TKDIALEALVDHLIDNPSDVVGLELGPGDEPLLPGTLLPM 741
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10006.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.34e-5 / Id = 60.00 Sequence D7G5K5_ECTSI
Match Name E-value Identity Description
D7G5K5_ECTSI 4.340e-5 60.00 Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 703 Hectar predicted targeting category other localisation Exons 4 Cds size 702
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789146.5314448-CDS-D-mesarthrocarpus_Contig10006:835..912 1680789146.5314448-CDS-D-mesarthrocarpus_Contig10006:835..912 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10006 836..912 + 1680789146.5431824-CDS-D-mesarthrocarpus_Contig10006:1591..1703 1680789146.5431824-CDS-D-mesarthrocarpus_Contig10006:1591..1703 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10006 1592..1703 + 1680789146.5527577-CDS-D-mesarthrocarpus_Contig10006:2180..2414 1680789146.5527577-CDS-D-mesarthrocarpus_Contig10006:2180..2414 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10006 2181..2414 + 1680789146.56246-CDS-D-mesarthrocarpus_Contig10006:3303..3582 1680789146.56246-CDS-D-mesarthrocarpus_Contig10006:3303..3582 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10006 3304..3582 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10006.1.1
>prot_D-mesarthrocarpus_Contig10006.1.1 ID=prot_D-mesarthrocarpus_Contig10006.1.1|Name=mRNA_D-mesarthrocarpus_Contig10006.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=234bp
CGAGGGPSSNFSPRFGSRCGKKELIRFLSYLQVSPASPPWVESLLSLLKV back to top mRNA from alignment at D-mesarthrocarpus_Contig10006:836..3582+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10006.1.1 ID=mRNA_D-mesarthrocarpus_Contig10006.1.1|Name=mRNA_D-mesarthrocarpus_Contig10006.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2747bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10006:836..3582+ (Discosporangium mesarthrocarpum MT17_79)TGTGGGGCTGGGGGAGGGCCATCGTCCAACTTCTCACCGCGCTTTGGGTC
TCGCTGTGGGAAGAAGGAGCTCATCAG GTTGGTCGATCTGAGGGCCTGAT
CTTTTGACCCTAACCCTATCCCTGTAATACTAACAATGCTGTTGACCCTG
ACAACCATGGTAACCCTAACTTGAAGGAGTTGATCAGGTCAGTTGATCCA
GGAGCCTGATCTTTAGACCCTAACACCCCCATCGGTAACCCTAACCCTGA
CAACCCTCTAGCTCAACTTAGGGAGTGTGGATCAATCTGGGGCCTAAACC
TGACCCTAAACCCTTCCTGGGAAAGCGTCAATGAAATCTGGAGGTGTAAC
CCTAACCTGTAACCTATTTTCTCCCCAACTCTTACCTAAATTTCTACATC
AGGGAGTGGAGGAGGGAAAGCATTATTGGGATCGGTTGATCTGCAGGCCC
TCACCTCAACCCTAGACGTTACCCTAAACCTCACCCTAACCCTGATCATA
AACTTGAACCTGATTCGACTCTTCCTATCCTTAACCCTTACCCTATCTCT
AACCCTGATCCCAACCCCTAACCCTAACCCTGTGTTTAAGGTATCCCCCC
TTGGCACCCTGCATATTTGAGACGCTAAACCTAACCCTAACCCTAGCCCT
GACTCACATTTTTTGGGGGGGGTCGGGTTCTTGAGTTACTAAGCCCAGCC
CTAACCCTAACCTTACCACCTTGATCCGCGTCTTGTCTTTTCTTCTTTGG
AGCCAGGTTCCTGAGTTACCTACAGGTGTCGCCGGCCTCCCCCCCGTGGG
TGGAGTCCCTGCTGTCCCTCCTCAAAGTCAGCAACAAGAATACCCTACAG
ATCAAAGCCGTGGTGAAG GTCGGAAACCCCAGCAAAGAAAACCAACCCCA
ACCCTAATCCTAATTCCAATGCCAAGAATAACCCTCACCCTAGCCCTAAC
CCTAGCCTGGACCCTGACCCCAACCCTAACCCTAACCCTTGTTCACAACC
CTAACCGTGGCCCTAGCGCTAACACTAAACCTAATCCGAACACCAAGAAT
AACCCTACCTTCTCCCTCTCTCTCTCTTTTACTCATCTCTTAAAAGTTGT
ATTTCCCCTTCTTCTCTTTTCTCTCTTTTCTCTCTATCTCTTTCCTGCCA
AATACAACACTAACCCCATGCATACAACATGGCCCCACACTCTATTCCTA
GCACATTCTCCTTGATTTTCTTTTTTCCCCCCTTTCCCCCCTTCATCCCC
TTTTTTAGTCCTATTTTCCATCTTTTGTTGTCATCCCGCCTCTTGATCTC
AGTTAACAAACCCACTGTCATATTCACTTACAAAAAAATCGTCAGGATGC
CCTCAATTCTGCCGCCACCGCCAAGGAGGAGGATGATGCCCCCCCTGGCC
CCACCCTCACCCCGCTGAGGAGACTTATTGTGGAGCTCAGGCAGGCGCTT
CAGGCTGGGAAGAACTATGCCCGGGGAGGGGGGACTATCCCGGTTGCCTC
TGCAAATGCTATGCCTGGCATTGCGGACAGGCAGGGGGGGGCAGGAGGGG
GGGGCATCACCAAGGACCTTGCCCTGGAG GTGGGGTTAAGGTTCAAGTTT
TGGCTAGGTTTAGGGCTAGGGTTGGGACCAGGTTAGGGTTGGGGATGGTG
TTGGGGCTAGGCTTAGAGTTGGGGTTGGTGTTGGGGCTAGGCTTAGGGTT
AGGGTTGGGGTTGGGGTTGGGGTTGGGGTTGGGGTCTGGCCACAGAGGAG
AGGCGCAGGAGGAGGGTTAGTATGGCCAAGGGTATAAGCAAGGACCCGAC
CCTCAAGGTGGGGTGAAGGTCTGGGTTTAGGATTTGGGTCAGACCTGTCC
TTCAGTGGACAAGGCCATTTGCCACAATAGAACTCCACGGTACTGTGCTG
CACAGTAGATGTTTCTTTTTCTTGGCATGTTTGGTGTGTACAAGCATTTA
TGTAACTAGTTTTTTCCTGCTCTTTGAAAAAGAGCCAAAGAAGGCCTGCA
GTCTTTTCTTGCTCCAAGCCTCTCCCTAACAGTAGCCCTCCCTCCTCTAT
CCTCTCCCCTCCCTCCTCCCCCCTCTAACATCTACCCTCCCACCTCTGCT
CTCTCCTCTCCCCCCCCTCCCCCCCTGTACCCCACATCCCTCTTCATACA
AACAAACACAAACCTATATTCATACACATGTGGTATAACTGTGCCATTTC
CCCCCTCATTCTGTGATACAAAAGCATCCACCAGACAGGCAAAACCAACA
CGCAAACGTAAATATGTGTGTATGTGCTTTTAATCAAGTAACGACAAGAC
AACCATCGTCTGCTGTTGTGCTGTGCCGTGCTGTGCAGTACCCGTACCAG
TGCGATTTTTTCTTTATTTTCTGCGGGGTAGCACAAAAAAAGTCTGGAAT
TAATAGAAATACATAAAACAACCGAACCAAACCAAACCTAACCAAACCCA
AACCAAACTGACAACAAGGCCCTGGCTGAGTACCTCCTGGACCACCCCCA
CCATGCCCTGGGCATGGAGCTGGGCGTGGATGACGGGCCCCTCCTCCCTG
GGACGTTCACCCCCATGAGGACCCTCTTTTCTCAAGTTGGGCATAACAGG
CCTAGCGGGCACGGTTCTGCAGGGCATTGTTGGTATGCCTCAGGCTCGCC
TGGGGCTGGGGCAGGATCAGGGACTCTGGGCGGCCCCAGGGCGTTGCCGG
TGTTGGCAGGCGGGTGCGCTAGGTCAGGCGGGGAAGAGTTCAGGGAG back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10006:836..3582+
>mRNA_D-mesarthrocarpus_Contig10006.1.1 ID=mRNA_D-mesarthrocarpus_Contig10006.1.1|Name=mRNA_D-mesarthrocarpus_Contig10006.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=702bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10006:836..3582+ (Discosporangium mesarthrocarpum MT17_79) back to top