mRNA_D-mesarthrocarpus_Contig10006.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10006.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10006.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10006.1.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.340e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  403 TKDLALEALAEYLLDHPHHALGMELGVDDGPLLPGTFTPM 522
            TKD+ALEAL ++L+D+P   +G+ELG  D PLLPGT  PM
Sbjct:  702 TKDIALEALVDHLIDNPSDVVGLELGPGDEPLLPGTLLPM 741
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10006.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K5_ECTSI4.340e-560.00Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10006contigD-mesarthrocarpus_Contig10006:836..3582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size703
Hectar predicted targeting categoryother localisation
Exons4
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789146.5314448-CDS-D-mesarthrocarpus_Contig10006:835..9121680789146.5314448-CDS-D-mesarthrocarpus_Contig10006:835..912Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10006 836..912 +
1680789146.5431824-CDS-D-mesarthrocarpus_Contig10006:1591..17031680789146.5431824-CDS-D-mesarthrocarpus_Contig10006:1591..1703Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10006 1592..1703 +
1680789146.5527577-CDS-D-mesarthrocarpus_Contig10006:2180..24141680789146.5527577-CDS-D-mesarthrocarpus_Contig10006:2180..2414Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10006 2181..2414 +
1680789146.56246-CDS-D-mesarthrocarpus_Contig10006:3303..35821680789146.56246-CDS-D-mesarthrocarpus_Contig10006:3303..3582Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10006 3304..3582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10006.1.1prot_D-mesarthrocarpus_Contig10006.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10006 836..3582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10006.1.1

>prot_D-mesarthrocarpus_Contig10006.1.1 ID=prot_D-mesarthrocarpus_Contig10006.1.1|Name=mRNA_D-mesarthrocarpus_Contig10006.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=234bp
CGAGGGPSSNFSPRFGSRCGKKELIRFLSYLQVSPASPPWVESLLSLLKV
SNKNTLQIKAVVKDALNSAATAKEEDDAPPGPTLTPLRRLIVELRQALQA
GKNYARGGGTIPVASANAMPGIADRQGGAGGGGITKDLALEALAEYLLDH
PHHALGMELGVDDGPLLPGTFTPMRTLFSQVGHNRPSGHGSAGHCWYASG
SPGAGAGSGTLGGPRALPVLAGGCARSGGEEFRE
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mRNA from alignment at D-mesarthrocarpus_Contig10006:836..3582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10006.1.1 ID=mRNA_D-mesarthrocarpus_Contig10006.1.1|Name=mRNA_D-mesarthrocarpus_Contig10006.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2747bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10006:836..3582+ (Discosporangium mesarthrocarpum MT17_79)
TGTGGGGCTGGGGGAGGGCCATCGTCCAACTTCTCACCGCGCTTTGGGTC
TCGCTGTGGGAAGAAGGAGCTCATCAGGTTGGTCGATCTGAGGGCCTGAT
CTTTTGACCCTAACCCTATCCCTGTAATACTAACAATGCTGTTGACCCTG
ACAACCATGGTAACCCTAACTTGAAGGAGTTGATCAGGTCAGTTGATCCA
GGAGCCTGATCTTTAGACCCTAACACCCCCATCGGTAACCCTAACCCTGA
CAACCCTCTAGCTCAACTTAGGGAGTGTGGATCAATCTGGGGCCTAAACC
TGACCCTAAACCCTTCCTGGGAAAGCGTCAATGAAATCTGGAGGTGTAAC
CCTAACCTGTAACCTATTTTCTCCCCAACTCTTACCTAAATTTCTACATC
AGGGAGTGGAGGAGGGAAAGCATTATTGGGATCGGTTGATCTGCAGGCCC
TCACCTCAACCCTAGACGTTACCCTAAACCTCACCCTAACCCTGATCATA
AACTTGAACCTGATTCGACTCTTCCTATCCTTAACCCTTACCCTATCTCT
AACCCTGATCCCAACCCCTAACCCTAACCCTGTGTTTAAGGTATCCCCCC
TTGGCACCCTGCATATTTGAGACGCTAAACCTAACCCTAACCCTAGCCCT
GACTCACATTTTTTGGGGGGGGTCGGGTTCTTGAGTTACTAAGCCCAGCC
CTAACCCTAACCTTACCACCTTGATCCGCGTCTTGTCTTTTCTTCTTTGG
AGCCAGGTTCCTGAGTTACCTACAGGTGTCGCCGGCCTCCCCCCCGTGGG
TGGAGTCCCTGCTGTCCCTCCTCAAAGTCAGCAACAAGAATACCCTACAG
ATCAAAGCCGTGGTGAAGGTCGGAAACCCCAGCAAAGAAAACCAACCCCA
ACCCTAATCCTAATTCCAATGCCAAGAATAACCCTCACCCTAGCCCTAAC
CCTAGCCTGGACCCTGACCCCAACCCTAACCCTAACCCTTGTTCACAACC
CTAACCGTGGCCCTAGCGCTAACACTAAACCTAATCCGAACACCAAGAAT
AACCCTACCTTCTCCCTCTCTCTCTCTTTTACTCATCTCTTAAAAGTTGT
ATTTCCCCTTCTTCTCTTTTCTCTCTTTTCTCTCTATCTCTTTCCTGCCA
AATACAACACTAACCCCATGCATACAACATGGCCCCACACTCTATTCCTA
GCACATTCTCCTTGATTTTCTTTTTTCCCCCCTTTCCCCCCTTCATCCCC
TTTTTTAGTCCTATTTTCCATCTTTTGTTGTCATCCCGCCTCTTGATCTC
AGTTAACAAACCCACTGTCATATTCACTTACAAAAAAATCGTCAGGATGC
CCTCAATTCTGCCGCCACCGCCAAGGAGGAGGATGATGCCCCCCCTGGCC
CCACCCTCACCCCGCTGAGGAGACTTATTGTGGAGCTCAGGCAGGCGCTT
CAGGCTGGGAAGAACTATGCCCGGGGAGGGGGGACTATCCCGGTTGCCTC
TGCAAATGCTATGCCTGGCATTGCGGACAGGCAGGGGGGGGCAGGAGGGG
GGGGCATCACCAAGGACCTTGCCCTGGAGGTGGGGTTAAGGTTCAAGTTT
TGGCTAGGTTTAGGGCTAGGGTTGGGACCAGGTTAGGGTTGGGGATGGTG
TTGGGGCTAGGCTTAGAGTTGGGGTTGGTGTTGGGGCTAGGCTTAGGGTT
AGGGTTGGGGTTGGGGTTGGGGTTGGGGTTGGGGTCTGGCCACAGAGGAG
AGGCGCAGGAGGAGGGTTAGTATGGCCAAGGGTATAAGCAAGGACCCGAC
CCTCAAGGTGGGGTGAAGGTCTGGGTTTAGGATTTGGGTCAGACCTGTCC
TTCAGTGGACAAGGCCATTTGCCACAATAGAACTCCACGGTACTGTGCTG
CACAGTAGATGTTTCTTTTTCTTGGCATGTTTGGTGTGTACAAGCATTTA
TGTAACTAGTTTTTTCCTGCTCTTTGAAAAAGAGCCAAAGAAGGCCTGCA
GTCTTTTCTTGCTCCAAGCCTCTCCCTAACAGTAGCCCTCCCTCCTCTAT
CCTCTCCCCTCCCTCCTCCCCCCTCTAACATCTACCCTCCCACCTCTGCT
CTCTCCTCTCCCCCCCCTCCCCCCCTGTACCCCACATCCCTCTTCATACA
AACAAACACAAACCTATATTCATACACATGTGGTATAACTGTGCCATTTC
CCCCCTCATTCTGTGATACAAAAGCATCCACCAGACAGGCAAAACCAACA
CGCAAACGTAAATATGTGTGTATGTGCTTTTAATCAAGTAACGACAAGAC
AACCATCGTCTGCTGTTGTGCTGTGCCGTGCTGTGCAGTACCCGTACCAG
TGCGATTTTTTCTTTATTTTCTGCGGGGTAGCACAAAAAAAGTCTGGAAT
TAATAGAAATACATAAAACAACCGAACCAAACCAAACCTAACCAAACCCA
AACCAAACTGACAACAAGGCCCTGGCTGAGTACCTCCTGGACCACCCCCA
CCATGCCCTGGGCATGGAGCTGGGCGTGGATGACGGGCCCCTCCTCCCTG
GGACGTTCACCCCCATGAGGACCCTCTTTTCTCAAGTTGGGCATAACAGG
CCTAGCGGGCACGGTTCTGCAGGGCATTGTTGGTATGCCTCAGGCTCGCC
TGGGGCTGGGGCAGGATCAGGGACTCTGGGCGGCCCCAGGGCGTTGCCGG
TGTTGGCAGGCGGGTGCGCTAGGTCAGGCGGGGAAGAGTTCAGGGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10006:836..3582+

>mRNA_D-mesarthrocarpus_Contig10006.1.1 ID=mRNA_D-mesarthrocarpus_Contig10006.1.1|Name=mRNA_D-mesarthrocarpus_Contig10006.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=702bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10006:836..3582+ (Discosporangium mesarthrocarpum MT17_79)
TGTGGGGCTGGGGGAGGGCCATCGTCCAACTTCTCACCGCGCTTTGGGTC
TCGCTGTGGGAAGAAGGAGCTCATCAGGTTCCTGAGTTACCTACAGGTGT
CGCCGGCCTCCCCCCCGTGGGTGGAGTCCCTGCTGTCCCTCCTCAAAGTC
AGCAACAAGAATACCCTACAGATCAAAGCCGTGGTGAAGGATGCCCTCAA
TTCTGCCGCCACCGCCAAGGAGGAGGATGATGCCCCCCCTGGCCCCACCC
TCACCCCGCTGAGGAGACTTATTGTGGAGCTCAGGCAGGCGCTTCAGGCT
GGGAAGAACTATGCCCGGGGAGGGGGGACTATCCCGGTTGCCTCTGCAAA
TGCTATGCCTGGCATTGCGGACAGGCAGGGGGGGGCAGGAGGGGGGGGCA
TCACCAAGGACCTTGCCCTGGAGGCCCTGGCTGAGTACCTCCTGGACCAC
CCCCACCATGCCCTGGGCATGGAGCTGGGCGTGGATGACGGGCCCCTCCT
CCCTGGGACGTTCACCCCCATGAGGACCCTCTTTTCTCAAGTTGGGCATA
ACAGGCCTAGCGGGCACGGTTCTGCAGGGCATTGTTGGTATGCCTCAGGC
TCGCCTGGGGCTGGGGCAGGATCAGGGACTCTGGGCGGCCCCAGGGCGTT
GCCGGTGTTGGCAGGCGGGTGCGCTAGGTCAGGCGGGGAAGAGTTCAGGG
AG
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