mRNA_D-mesarthrocarpus_Contig10276.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10276.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10276.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A7S0Z522_9CRYP (Histidine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z522_9CRYP)

HSP 1 Score: 57.4 bits (137), Expect = 5.860e-8
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG 81
            FE FDRRG+LRA+CGGGRYDRLLESFG
Sbjct:   87 FEGFDRRGELRAICGGGRYDRLLESFG 113
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A2I0BC99_9ASPA (Histidine--tRNA ligase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BC99_9ASPA)

HSP 1 Score: 58.2 bits (139), Expect = 6.620e-8
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFGY 84
            FEAFDR GKLRA+CGGGRYDRLL +FGY
Sbjct:  354 FEAFDREGKLRAICGGGRYDRLLSTFGY 381
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A835FDD3_9POAL (tRNA-synt_His domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835FDD3_9POAL)

HSP 1 Score: 57.0 bits (136), Expect = 1.490e-7
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG--------YHVGD---LQHWSTVNSCIVLRENDGVFLTSRGSWQHGLV 192
            FEAFDR G LRA+CGGGRYDRLL +FG        +  GD   ++H   +N+         + L     W+ G+V
Sbjct:  226 FEAFDREGNLRAICGGGRYDRLLSTFGSEDIPACGFGFGDAVIVEHAERINA-------SRLILVGNSEWERGMV 293
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A426ZLG8_ENSVE (Histidine--tRNA ligase n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426ZLG8_ENSVE)

HSP 1 Score: 55.5 bits (132), Expect = 4.080e-7
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG 81
            FEAFDR GKLRA+CGGGRYDRLL +FG
Sbjct:  104 FEAFDREGKLRAICGGGRYDRLLSTFG 130
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A833VPF2_9POAL (Histidine--tRNA ligase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VPF2_9POAL)

HSP 1 Score: 55.8 bits (133), Expect = 4.300e-7
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG 81
            FEAFDR+GKLRA+CGGGRYDRLL +FG
Sbjct:  344 FEAFDRQGKLRAICGGGRYDRLLSTFG 370
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A811NEH0_9POAL (Histidine--tRNA ligase n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811NEH0_9POAL)

HSP 1 Score: 55.5 bits (132), Expect = 5.240e-7
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG 81
            FEAFDR GKLRA+CGGGRYDRLL +FG
Sbjct:  165 FEAFDREGKLRAICGGGRYDRLLSTFG 191
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A8J5GYD7_ZINOF (tRNA-synt_His domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GYD7_ZINOF)

HSP 1 Score: 55.5 bits (132), Expect = 5.680e-7
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG 81
            FEAFDR GKLRA+CGGGRYDRLL +FG
Sbjct:  179 FEAFDREGKLRAICGGGRYDRLLSTFG 205
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A4D9CRF8_9STRA (Histidine--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRF8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.800e-7
Identity = 22/27 (81.48%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG 81
            FEAFDR+G+LRA+CGGGRYD+LLE+FG
Sbjct:  260 FEAFDRKGELRAICGGGRYDKLLETFG 286
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A5P1ECY7_ASPOF (Histidine--tRNA ligase n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ECY7_ASPOF)

HSP 1 Score: 55.5 bits (132), Expect = 5.820e-7
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG 81
            FEAFDR GKLRA+CGGGRYDRLL +FG
Sbjct:  295 FEAFDREGKLRAICGGGRYDRLLSTFG 321
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BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Match: A0A1D6MIQ0_MAIZE (Histidine--tRNA ligase n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6MIQ0_MAIZE)

HSP 1 Score: 55.5 bits (132), Expect = 5.870e-7
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 FEAFDRRGKLRAVCGGGRYDRLLESFG 81
            FEAFDR GKLRA+CGGGRYDRLL +FG
Sbjct:  340 FEAFDREGKLRAICGGGRYDRLLSTFG 366
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10276.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0Z522_9CRYP5.860e-888.89Histidine--tRNA ligase (Fragment) n=1 Tax=Hemiselm... [more]
A0A2I0BC99_9ASPA6.620e-885.71Histidine--tRNA ligase n=1 Tax=Apostasia shenzheni... [more]
A0A835FDD3_9POAL1.490e-740.00tRNA-synt_His domain-containing protein n=1 Tax=Di... [more]
A0A426ZLG8_ENSVE4.080e-785.19Histidine--tRNA ligase n=1 Tax=Ensete ventricosum ... [more]
A0A833VPF2_9POAL4.300e-785.19Histidine--tRNA ligase n=1 Tax=Carex littledalei T... [more]
A0A811NEH0_9POAL5.240e-785.19Histidine--tRNA ligase n=2 Tax=Miscanthus lutarior... [more]
A0A8J5GYD7_ZINOF5.680e-785.19tRNA-synt_His domain-containing protein n=1 Tax=Zi... [more]
A0A4D9CRF8_9STRA5.800e-781.48Histidine--tRNA ligase n=1 Tax=Nannochloropsis sal... [more]
A0A5P1ECY7_ASPOF5.820e-785.19Histidine--tRNA ligase n=1 Tax=Asparagus officinal... [more]
A0A1D6MIQ0_MAIZE5.870e-785.19Histidine--tRNA ligase n=1 Tax=Zea mays TaxID=4577... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10276contigD-mesarthrocarpus_Contig10276:596..1616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog38727.Pavir.Ba03103.1.p
PFAMsHGTP_anticodon,tRNA-synt_His
Model size267
Max annot lvl35493|Streptophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01892
KEGG ReactionR03655
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004821,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue9.63e-08
EggNOG OGsCOG0124@1|root,KOG1936@2759|Eukaryota,37QT9@33090|Viridiplantae,3GGEC@35493|Streptophyta,3KN71@4447|Liliopsida,3I5GB@38820|Poales
EC6.1.1.21
DescriptionHistidyl-tRNA synthetase
Cds size264
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789168.8787565-CDS-D-mesarthrocarpus_Contig10276:597..7811680789168.8787565-CDS-D-mesarthrocarpus_Contig10276:597..781Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10276 598..781 -
1680789168.8940754-CDS-D-mesarthrocarpus_Contig10276:1536..16161680789168.8940754-CDS-D-mesarthrocarpus_Contig10276:1536..1616Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10276 1537..1616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10276.1.1prot_D-mesarthrocarpus_Contig10276.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10276 598..1616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10276.1.1

>prot_D-mesarthrocarpus_Contig10276.1.1 ID=prot_D-mesarthrocarpus_Contig10276.1.1|Name=mRNA_D-mesarthrocarpus_Contig10276.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=88bp
FEAFDRRGKLRAVCGGGRYDRLLESFGYHVGDLQHWSTVNSCIVLRENDG
VFLTSRGSWQHGLVCDGTKARLMFDALTCLCYVYLLCS
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mRNA from alignment at D-mesarthrocarpus_Contig10276:596..1616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10276.1.1 ID=mRNA_D-mesarthrocarpus_Contig10276.1.1|Name=mRNA_D-mesarthrocarpus_Contig10276.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1021bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10276:596..1616- (Discosporangium mesarthrocarpum MT17_79)
TTTGAGGCCTTTGATCGGAGGGGGAAGCTTCGTGCCGTGTGCGGGGGGGG
GCGATACGACCGCCTGCTGGAGTCATTCGGGTGGGTTTTGACGAGGGTGG
ACTGGCGTTGGTGCCATGTCACGTGCGTTTGTCTTTCACGTGTATGTATG
AGTCTTTTGTGTGTGCGTTTGTCTTTCATGTGTATGTATGAGTCTTTTGT
GTGTGCGTTTGTCTTTCATGTGTATGTATGAGTCTTTTGTGTGTGCGTTT
GTCTTTCATGTGTACGTATGAGTCTTTTGTGTGTGCATTTGTCTTTCATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATGTGTGTGTGTATT
TCACGCCTTTAATAGAAGGTAATGCATTCACGTAAAACGAGACCCCCTGG
ACTACAGTCACATAACGTCCGGGTCCCTAACCCTTCAAACCTATCCAAAC
ATGAACATTGTTTAAGGGCCATTCCAAACACACACACACACACACACACA
CAATTTTACATCCTGAAGAAAGTATGTATGATGAAAGATGATGAAGAAAG
GTCACAACTTTCCCAAATAGTCCTCTTGTCACACCAAAACAAAGGTGGGA
TGTGGAACAGTGAGGCATTATTATTGCGTACACAAAGTATCACTGTCAGC
ACAGTATCATTTTCAGCACCATGCAGTCAGTTTAAACGCTGCCAGACCCG
TGGCCAATGGGTGAGAAAAAGAAATGAACTAACCGCAAGAAAAACGAGAG
AAAGAAAAAGGGAAAAACAAGGGGAAGATATGGAAAAGTGGAACAGGCCT
AACAATCGCCATGAACTATGACGCACGGGTCCCAGATATCATGTCGGAGA
TCTGCAGCACTGGAGCACGGTCAACTCATGCATTGTGTTGAGGGAAAATG
ATGGAGTATTTTTGACCTCACGGGGTAGCTGGCAGCATGGGTTGGTGTGT
GATGGCACCAAAGCACGTCTAATGTTTGATGCCCTTACCTGTCTATGTTA
CGTATATCTACTGTGCAGTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10276:596..1616-

>mRNA_D-mesarthrocarpus_Contig10276.1.1 ID=mRNA_D-mesarthrocarpus_Contig10276.1.1|Name=mRNA_D-mesarthrocarpus_Contig10276.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=264bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10276:596..1616- (Discosporangium mesarthrocarpum MT17_79)
TTTGAGGCCTTTGATCGGAGGGGGAAGCTTCGTGCCGTGTGCGGGGGGGG
GCGATACGACCGCCTGCTGGAGTCATTCGGATATCATGTCGGAGATCTGC
AGCACTGGAGCACGGTCAACTCATGCATTGTGTTGAGGGAAAATGATGGA
GTATTTTTGACCTCACGGGGTAGCTGGCAGCATGGGTTGGTGTGTGATGG
CACCAAAGCACGTCTAATGTTTGATGCCCTTACCTGTCTATGTTACGTAT
ATCTACTGTGCAGT
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