mRNA_D-mesarthrocarpus_Contig10254.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10254.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10254.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: D8LGV3_ECTSI (2OG-Fe(II) oxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV3_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.740e-9
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPK 123
            R F  R+++DH+QKVEF L  GSLL+MEG+TQ+HWQH VPK
Sbjct:  225 RRFQLRRKKDHAQKVEFILGGGSLLLMEGSTQEHWQHRVPK 265
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BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: A0A844M3Q7_9GAMM (Alpha-ketoglutarate-dependent dioxygenase AlkB n=3 Tax=Psychrobacter TaxID=497 RepID=A0A844M3Q7_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 7.010e-9
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPKQ 126
            R FL R +EDHS+K+E  L  GSLLVM G  Q HWQHSVPKQ
Sbjct:  196 RRFLLRLKEDHSRKIELPLHHGSLLVMAGAIQHHWQHSVPKQ 237
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BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: A0A0C1F384_9FLAO (DNA repair protein n=1 Tax=Flavobacterium sp. AED TaxID=1423323 RepID=A0A0C1F384_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 9.260e-9
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPKQ 126
            R FL R+ +DHS K+EF L+ G+LL+M G  Q HWQHSVPK+
Sbjct:  190 RRFLLRRNDDHSVKIEFPLKHGTLLIMRGELQHHWQHSVPKE 231
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BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: A0A5A9ZF46_9GAMM (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Psychrobacter sp. ANT_WB68 TaxID=2597355 RepID=A0A5A9ZF46_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 1.350e-8
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPKQ 126
            R FL R+R+DHS K+E  L+ GS+LVM G  Q HWQHSVPKQ
Sbjct:  197 RRFLLRRRDDHSTKLEIPLQHGSILVMAGALQHHWQHSVPKQ 238
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BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: A0A6H5J9B1_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.050e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPK 123
            R F  R R+D +QK+EF L  GSLL+MEG+TQ+HWQH VPK
Sbjct:   26 RRFELRGRKDRTQKMEFVLGGGSLLLMEGSTQEHWQHRVPK 66
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BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: UPI001EDE62C6 (alpha-ketoglutarate-dependent dioxygenase AlkB n=2 Tax=unclassified Psychrobacter TaxID=196806 RepID=UPI001EDE62C6)

HSP 1 Score: 55.8 bits (133), Expect = 4.980e-8
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPKQ 126
            R FL R+R+DHS K++  L+ GS+LVM G  Q HWQHSVPKQ
Sbjct:  197 RRFLLRRRDDHSIKLDIPLKHGSILVMAGALQHHWQHSVPKQ 238
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BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: T2JKF6_CROWT (Alkylated DNA repair protein n=1 Tax=Crocosphaera watsonii WH 0402 TaxID=1284629 RepID=T2JKF6_CROWT)

HSP 1 Score: 54.7 bits (130), Expect = 7.190e-8
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPK 123
            R F+FR+R+DH  K+E KL  G LL+M   TQK WQH VPK
Sbjct:  141 RRFIFRRRDDHGNKIERKLNHGDLLIMRDETQKFWQHQVPK 181
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BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: UPI001F2DF7C9 (alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Marinagarivorans sp. GE09 TaxID=2721545 RepID=UPI001F2DF7C9)

HSP 1 Score: 54.7 bits (130), Expect = 8.560e-8
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPK 123
            R F+ R + DH+QK  F L  GSLL+M G+TQ+HWQH+VPK
Sbjct:  141 RRFVLRSKHDHTQKRSFHLNHGSLLLMAGDTQQHWQHAVPK 181
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: A0A4Q6BWN5_9PROT (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6BWN5_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 9.210e-8
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPK 123
            R F+ R+R DH+ K+  +L SGSLL+M G TQ HWQH++PK
Sbjct:  142 RKFVLRRRADHANKISIELESGSLLLMRGETQAHWQHALPK 182
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Match: A0A839TDJ4_9GAMM (Alkylated DNA repair dioxygenase AlkB n=1 Tax=Psychrobacter luti TaxID=198481 RepID=A0A839TDJ4_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-7
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPKQ 126
            R FL R+R++HS K+E  L+ GS+LVM G  Q HWQHSVPKQ
Sbjct:  197 RRFLLRRRDNHSIKLEISLQHGSVLVMAGALQHHWQHSVPKQ 238
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGV3_ECTSI3.740e-965.852OG-Fe(II) oxygenase n=1 Tax=Ectocarpus siliculosu... [more]
A0A844M3Q7_9GAMM7.010e-966.67Alpha-ketoglutarate-dependent dioxygenase AlkB n=3... [more]
A0A0C1F384_9FLAO9.260e-959.52DNA repair protein n=1 Tax=Flavobacterium sp. AED ... [more]
A0A5A9ZF46_9GAMM1.350e-864.29Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A6H5J9B1_9PHAE3.050e-863.41Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
UPI001EDE62C64.980e-861.90alpha-ketoglutarate-dependent dioxygenase AlkB n=2... [more]
T2JKF6_CROWT7.190e-858.54Alkylated DNA repair protein n=1 Tax=Crocosphaera ... [more]
UPI001F2DF7C98.560e-858.54alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A4Q6BWN5_9PROT9.210e-856.10Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A839TDJ4_9GAMM1.320e-761.90Alkylated DNA repair dioxygenase AlkB n=1 Tax=Psyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10254contigD-mesarthrocarpus_Contig10254:59..871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGV3
Preferred nameALKBH3
PFAMs2OG-FeII_Oxy_2
Model size126
Max annot lvl2759|Eukaryota
KEGG koko:K10859,ko:K10860
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008198,GO:0008283,GO:0009451,GO:0009987,GO:0016070,GO:0016491,GO:0016705,GO:0016706,GO:0016787,GO:0031974,GO:0031981,GO:0032451,GO:0033554,GO:0034641,GO:0035510,GO:0035511,GO:0035513,GO:0035514,GO:0035515,GO:0035552,GO:0035553,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043734,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044728,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051213,GO:0051716,GO:0051747,GO:0055114,GO:0070013,GO:0070988,GO:0070989,GO:0071704,GO:0080111,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1990930
Exons2
Evalue6.14e-10
EggNOG OGsCOG3145@1|root,2QW9E@2759|Eukaryota
EC1.14.11.33,1.14.11.54
DescriptionRNA N1-methyladenosine dioxygenase activity
Cds size126
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789167.4058537-CDS-D-mesarthrocarpus_Contig10254:58..1001680789167.4058537-CDS-D-mesarthrocarpus_Contig10254:58..100Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10254 59..100 +
1680789167.423571-CDS-D-mesarthrocarpus_Contig10254:787..8711680789167.423571-CDS-D-mesarthrocarpus_Contig10254:787..871Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10254 788..871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10254.1.1prot_D-mesarthrocarpus_Contig10254.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10254 59..871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10254.1.1

>prot_D-mesarthrocarpus_Contig10254.1.1 ID=prot_D-mesarthrocarpus_Contig10254.1.1|Name=mRNA_D-mesarthrocarpus_Contig10254.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=42bp
RYFLFRQREDHSQKVEFKLRSGSLLVMEGNTQKHWQHSVPKQ
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mRNA from alignment at D-mesarthrocarpus_Contig10254:59..871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10254.1.1 ID=mRNA_D-mesarthrocarpus_Contig10254.1.1|Name=mRNA_D-mesarthrocarpus_Contig10254.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=813bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10254:59..871+ (Discosporangium mesarthrocarpum MT17_79)
AGGTACTTCCTTTTTCGTCAGAGAGAAGACCACTCTCAAAAGGTGTTGGC
TTTGAAATCCTCCAAGAGGTCCCCCGTAACCATGACCATAACCCTAATCC
CAACCATTGCCCTCTAATGGCTGGGTGGGGAGGTACTTCCTTTTTCGTCA
GAGAGAAGACCACTCTCAAAAGGTGTTGGCTTTGAAATCCTCCAAAAGGT
CCCCCGTAACCATGACCATAACCCTAATCCCAACCATTGCCCTCTAATGG
CTGGGTGGGGAGGTACTTCCCTTTTCGTCAGAGAGAAGATCGCCTTCTCT
CTGAAAAGAAAATGTACTGCTTCTGTGGCCCATCCCTAGAGGGCCGGAGC
CAGGCGGAAGATTCTAGTTTTGACAAGTGAATTTCTGTGTTTTATCTAAT
GTCTTGATTACTTTCTCTGTTTCAAGTGTGAATTTGCAGATGTTGGCCCT
GTTAGGAAGCTAGTGGGAAAGAGCTAGAGTTAGAATGCTTTGGATACTTG
TTTTTGGTAAACATTCCAGCAGGACCCCCAAACCCCTTGTGGTCACCTCA
GCACCACCTCCCAGTTTGACAGGTCCTGCGTCAGGTATAGTTTTTCTCCA
TTCCCTTTATCAAATTCCTTTGTGCATGTAACCCTATCCCCAACCCTGAC
TTTTCTCTGTCTGACCCACCTCACCTGCCCCCTAAACAACCACCTCTCCC
TCATGACTCATGACACTGCGTCCTGCTAGGTTGAGTTCAAGCTGAGGTCC
GGCTCCCTCCTGGTGATGGAGGGCAATACTCAGAAGCACTGGCAGCACTC
TGTCCCTAAGCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10254:59..871+

>mRNA_D-mesarthrocarpus_Contig10254.1.1 ID=mRNA_D-mesarthrocarpus_Contig10254.1.1|Name=mRNA_D-mesarthrocarpus_Contig10254.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=126bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10254:59..871+ (Discosporangium mesarthrocarpum MT17_79)
AGGTACTTCCTTTTTCGTCAGAGAGAAGACCACTCTCAAAAGGTTGAGTT
CAAGCTGAGGTCCGGCTCCCTCCTGGTGATGGAGGGCAATACTCAGAAGC
ACTGGCAGCACTCTGTCCCTAAGCAG
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