mRNA_D-mesarthrocarpus_Contig10224.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10224.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10224.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.1.1 vs. uniprot
Match: D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.260e-8
Identity = 66/221 (29.86%), Postives = 91/221 (41.18%), Query Frame = 1 
Query:   10 PWYYGAPDITLHYPQEETGRGGVIFDAMVVLKRALMANVNHDTDPAGLISLLEDVLTKFFGLKGLEGRGQREETCARGGLAAGSPVKQARTLPPPXXXXLPGIPCLSNGEGGVGXXXXXXXHQGGPSSATS-AAAGSPKPKEHNQGQVRVLGYGGGQENSPVAEGTTPLPSCQEIFFSTTDFYLFLRVHYLLVDRLTVARRLCREASASEEAELEDHQRAI 669
            PWY  A  +TL YPQE  G  G+  D M +L   L      + D     + + D+L  FF L         E + A GG                      G    S+G+   G           P S T+   A +P P    QG V         ++S     + PLP  QE+ F+TTDFYL LR+H+LL +RL  A++LC EA  S +  +   Q  +
Sbjct:  864 PWYMFA-HLTLKYPQE--GTPGIHKDIMELLTHTLARRPPSEDDVRQASTTVADLLPAFFSLGRSNQAANGEGSTALGGN---------------------GGCAQSSGDERKGDRRRS------PQSVTNEGTALTPDP----QGCVPA-------KDSEGRASSNPLPQGQEVMFTTTDFYLVLRMHHLLAERLAEAKKLCSEAGLSRQTVVASPQEVL 1043
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10224.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G470_ECTSI2.260e-829.86HDAC_interact domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10224contigD-mesarthrocarpus_Contig10224:252..2761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G470
PFAMsPAH,Sin3_corepress,Sin3a_C
Model size984
Max annot lvl2759|Eukaryota
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.71e-09
EggNOG OGsCOG5602@1|root,KOG4204@2759|Eukaryota
Descriptionhistone deacetylation
Cds size981
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789165.7168548-CDS-D-mesarthrocarpus_Contig10224:252..5701680789165.7168548-CDS-D-mesarthrocarpus_Contig10224:252..570Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10224 253..570 -
1680789165.7303975-CDS-D-mesarthrocarpus_Contig10224:1333..17231680789165.7303975-CDS-D-mesarthrocarpus_Contig10224:1333..1723Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10224 1334..1723 -
1680789165.7458785-CDS-D-mesarthrocarpus_Contig10224:2488..27611680789165.7458785-CDS-D-mesarthrocarpus_Contig10224:2488..2761Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10224 2489..2761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10224.1.1prot_D-mesarthrocarpus_Contig10224.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10224 253..2761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10224.1.1

>prot_D-mesarthrocarpus_Contig10224.1.1 ID=prot_D-mesarthrocarpus_Contig10224.1.1|Name=mRNA_D-mesarthrocarpus_Contig10224.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=327bp
SQPPWYYGAPDITLHYPQEETGRGGVIFDAMVVLKRALMANVNHDTDPAG
LISLLEDVLTKFFGLKGLEGRGQREETCARGGLAAGSPVKQARTLPPPPP
PPLPGIPCLSNGEGGVGGGEGMGGHQGGPSSATSAAAGSPKPKEHNQGQV
RVLGYGGGQENSPVAEGTTPLPSCQEIFFSTTDFYLFLRVHYLLVDRLTV
ARRLCREASASEEAELEDHQRAINDFKSRTEDIAGLTGVLGKEGSAPTGM
ETGEGPSTRAEADTGAGTGIGTGGEAHTGAGIGAAPLNGEGGQDAYESYL
LVLNSWLEGSIGSDQYEESVIAIMGNK
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mRNA from alignment at D-mesarthrocarpus_Contig10224:252..2761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10224.1.1 ID=mRNA_D-mesarthrocarpus_Contig10224.1.1|Name=mRNA_D-mesarthrocarpus_Contig10224.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2510bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10224:252..2761- (Discosporangium mesarthrocarpum MT17_79)
AGTCAACCCCCATGGTACTACGGGGCGCCCGATATCACGCTGCACTACCC
ACAAGAGGAGACAGGGAGGGGGGGTGTTATATTTGATGCCATGGTGGTGC
TGAAGAGGGCGCTCATGGCAAACGTAAATCACGACACCGACCCAGCAGGG
CTGATCTCTCTCCTGGAGGATGTGCTGACTAAATTTTTTGGCCTTAAGGG
GCTCGAGGGCCGGGGTCAGAGGGAAGAGACGTGTGCAAGGGGTGGCCTTG
CAGCTGGTAGTCCTGTGAAGCAGGTGGTATTAGCAAGTATAGGCTTGGGC
CGTCTGTTAAATAAGTGTTTTTTTGGCTCTCATTTTTTCTTTATTTTGCC
CTTGCCTCTTGTTTGCGCTTTGTGTGTTGAATAGTTCAGTTCCTCCTACT
CCTGCAATATGCTTCATATAGGATACCCCTTCAATATACTTCATATAGTG
TACACAAGCTTCGAAGTGCTCGGTGCAGTGTTCCTTGCACAGCTATGTGC
ACAGGACAATGTATCATAGAGGCGTGAGAGTAAGTTTGGCTGTGCCAATA
TAAAGAGAAGGGGGAAACCTTAACCCTGAGATTGATCCATTCCTGGGGCA
GCTGCAGTTCGCCCTAACCTTAAGAGTGGAGACCTACCTCACAAGAAGGA
GAGAGACAGCTGAACCGTAAAGATCAGTGGATATGCTCCCCCCCCATTAA
CCATTGACCCTTGCCTCTGTGATGAGTATCGGATGAGCAGCATCATGTGG
TGTGCATTCCCATTGCAGGAACATCTTGGGCCTCATCAGGCCCCCCCAGG
ATCTCCACACTGTGCTGCTTCCCAGCCCTCAAAAAATACCCATCCCTGCC
TGTTTGTAGCTTGCCCCTCCCTCAATGTTTTTTCCCCTTTACCTCTTGTT
GTAATCATGAACGAGAACCCTAACCCTAACCCTTTGATTACAACGAGTGA
GTATTCATTGATTGTCTGCTTTCTTTAGAGCATCAGTGCACATGATTTAT
TCAATCGATCAATTCCCTTTCTTTCCTTGGCAAAACAGGCAAGGACCCTC
CCGCCCCCACCCCCACCCCCACTCCCCGGCATCCCCTGTCTGAGCAATGG
TGAGGGTGGTGTTGGGGGTGGGGAGGGTATGGGTGGCCACCAGGGAGGAC
CCAGCAGTGCCACCAGTGCAGCTGCTGGGAGCCCAAAACCCAAGGAGCAT
AACCAGGGGCAGGTGCGAGTGCTGGGATATGGGGGAGGGCAAGAAAACAG
CCCCGTAGCAGAGGGCACAACCCCCCTACCCAGTTGTCAGGAGATATTCT
TCTCCACAACGGACTTTTACCTGTTCTTGAGGGTGCACTACCTGCTGGTG
GACAGGCTAACGGTGGCCAGGAGGCTCTGCAGGGAGGCATCCGCTTCCGA
GGAGGCTGAGCTGGAGGACCACCAAAGGGTTAGGGGAGGGATTAGCTCAG
GGTTAGGGTCAGGCTAACAGGGATGGGGATGGGGTGGGATTACCTCAGGG
TTAGGGTCAGGTGTGATGATGTTGCGGGTTAGGGTTGGGAGGGGGGGGGG
GGAGGGGGGGGGGGTCAGCGACCAGCTTATTTTTTTTCGTCCTTCTGCGG
GGGTGGTGTCCTAGGGTTTGGGTCAGGGTTTTCCACTGTTTGGCTGGGGG
CCGGGAGGGGGGGAGGGGGTTCTGTCAGCTGGCTGGTCCACATCGTTTAG
GGTTAGGGTTAGCTCAGGGCATGGGAAAGTGGGGTTAGGGTTTGGGCTTA
AGGGCCTTAGGCTTGTTCTCTGGAAGTAGGGTCAGGGTTAGGGCTTAGGG
GCTTGTGTTTCTTTCTCAGGAGGAAGAAAGAGCAACATGCCACCACATCC
CATTCCATTCTATTCCATTCCGTGCGCTCCTGTGATTCGCTCAACGCTAA
CCCTAGCCCCAACCCTAACCCTAGCCTCAACCCTGATCCTGACCCTTAAC
CCCTGACCCCATTTTGTTAGCGCTACTGTGCAGTCCTTCTATCTTCACGT
GTAAGTGCTTCCTTTGAAAAAGAATGCACTGTATTTCATTGCCTGTTAAC
AGGTTTTACCGAGAAAAAGAGCAAAACGATCGCAAAAACAAGCAAAACAA
AACAAAACAAGACAAAACAAGACAAAACTCCAAAAACAAGCAAAAAAAAA
CAAAGCAGTATAGAAACCAGAAAACGAAATCTCAACTGCAGGCAATCAAC
GACTTCAAGTCAAGAACAGAAGACATTGCTGGCTTAACAGGGGTCTTGGG
AAAGGAGGGCAGTGCCCCTACAGGCATGGAGACAGGGGAAGGACCGAGCA
CAAGGGCAGAGGCAGACACAGGGGCAGGCACGGGAATTGGGACAGGAGGA
GAAGCACACACAGGGGCAGGCATAGGGGCAGCACCTCTAAATGGTGAAGG
GGGACAGGATGCATACGAGAGTTACCTCCTGGTTCTGAACTCATGGTTGG
AGGGTTCCATTGGATCGGATCAGTACGAGGAGAGTGTCATTGCCATCATG
GGCAACAAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10224:252..2761-

>mRNA_D-mesarthrocarpus_Contig10224.1.1 ID=mRNA_D-mesarthrocarpus_Contig10224.1.1|Name=mRNA_D-mesarthrocarpus_Contig10224.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=981bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10224:252..2761- (Discosporangium mesarthrocarpum MT17_79)
AGTCAACCCCCATGGTACTACGGGGCGCCCGATATCACGCTGCACTACCC
ACAAGAGGAGACAGGGAGGGGGGGTGTTATATTTGATGCCATGGTGGTGC
TGAAGAGGGCGCTCATGGCAAACGTAAATCACGACACCGACCCAGCAGGG
CTGATCTCTCTCCTGGAGGATGTGCTGACTAAATTTTTTGGCCTTAAGGG
GCTCGAGGGCCGGGGTCAGAGGGAAGAGACGTGTGCAAGGGGTGGCCTTG
CAGCTGGTAGTCCTGTGAAGCAGGCAAGGACCCTCCCGCCCCCACCCCCA
CCCCCACTCCCCGGCATCCCCTGTCTGAGCAATGGTGAGGGTGGTGTTGG
GGGTGGGGAGGGTATGGGTGGCCACCAGGGAGGACCCAGCAGTGCCACCA
GTGCAGCTGCTGGGAGCCCAAAACCCAAGGAGCATAACCAGGGGCAGGTG
CGAGTGCTGGGATATGGGGGAGGGCAAGAAAACAGCCCCGTAGCAGAGGG
CACAACCCCCCTACCCAGTTGTCAGGAGATATTCTTCTCCACAACGGACT
TTTACCTGTTCTTGAGGGTGCACTACCTGCTGGTGGACAGGCTAACGGTG
GCCAGGAGGCTCTGCAGGGAGGCATCCGCTTCCGAGGAGGCTGAGCTGGA
GGACCACCAAAGGGCAATCAACGACTTCAAGTCAAGAACAGAAGACATTG
CTGGCTTAACAGGGGTCTTGGGAAAGGAGGGCAGTGCCCCTACAGGCATG
GAGACAGGGGAAGGACCGAGCACAAGGGCAGAGGCAGACACAGGGGCAGG
CACGGGAATTGGGACAGGAGGAGAAGCACACACAGGGGCAGGCATAGGGG
CAGCACCTCTAAATGGTGAAGGGGGACAGGATGCATACGAGAGTTACCTC
CTGGTTCTGAACTCATGGTTGGAGGGTTCCATTGGATCGGATCAGTACGA
GGAGAGTGTCATTGCCATCATGGGCAACAAG
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