prot_D-mesarthrocarpus_Contig10224.1.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10224.1.1
Unique Name	prot_D-mesarthrocarpus_Contig10224.1.1
Type	polypeptide
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length	327

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig10224.1.1 vs. uniprot
Match: D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.260e-8
Identity = 66/221 (29.86%), Postives = 91/221 (41.18%), Query Frame = 0

Query:    4 PWYYGAPDITLHYPQEETGRGGVIFDAMVVLKRALMANVNHDTDPAGLISLLEDVLTKFFGLKGLEGRGQREETCARGGLAAGSPVKQARTLPPPXXXXLPGIPCLSNGEGGVGXXXXXXXHQGGPSSATS-AAAGSPKPKEHNQGQVRVLGYGGGQENSPVAEGTTPLPSCQEIFFSTTDFYLFLRVHYLLVDRLTVARRLCREASASEEAELEDHQRAI 223
            PWY  A  +TL YPQE  G  G+  D M +L   L      + D     + + D+L  FF L         E + A GG                      G    S+G+   G           P S T+   A +P P    QG V         ++S     + PLP  QE+ F+TTDFYL LR+H+LL +RL  A++LC EA  S +  +   Q  +
Sbjct:  864 PWYMFA-HLTLKYPQE--GTPGIHKDIMELLTHTLARRPPSEDDVRQASTTVADLLPAFFSLGRSNQAANGEGSTALGGN---------------------GGCAQSSGDERKGDRRRS------PQSVTNEGTALTPDP----QGCVPA-------KDSEGRASSNPLPQGQEVMFTTTDFYLVLRMHHLLAERLAEAKKLCSEAGLSRQTVVASPQEVL 1043

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10224.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10224.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G470_ECTSI	2.260e-8	29.86	HDAC_interact domain-containing protein n=2 Tax=Ec...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 209..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..150
IPR031693	Sin3, C-terminal	PFAM	PF16879	Sin3a_C	coord: 178..326 e-value: 1.5E-7 score: 31.5

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-mesarthrocarpus_Contig10224	contig	D-mesarthrocarpus_Contig10224:253..2761 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig10224.1.1	mRNA_D-mesarthrocarpus_Contig10224.1.1	Discosporangium mesarthrocarpum MT17_79	mRNA	D-mesarthrocarpus_Contig10224 252..2761 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-mesarthrocarpus_Contig10224.1.1 ID=prot_D-mesarthrocarpus_Contig10224.1.1|Name=mRNA_D-mesarthrocarpus_Contig10224.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=327bp
SQPPWYYGAPDITLHYPQEETGRGGVIFDAMVVLKRALMANVNHDTDPAG
LISLLEDVLTKFFGLKGLEGRGQREETCARGGLAAGSPVKQARTLPPPPP
PPLPGIPCLSNGEGGVGGGEGMGGHQGGPSSATSAAAGSPKPKEHNQGQV
RVLGYGGGQENSPVAEGTTPLPSCQEIFFSTTDFYLFLRVHYLLVDRLTV
ARRLCREASASEEAELEDHQRAINDFKSRTEDIAGLTGVLGKEGSAPTGM
ETGEGPSTRAEADTGAGTGIGTGGEAHTGAGIGAAPLNGEGGQDAYESYL
LVLNSWLEGSIGSDQYEESVIAIMGNK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR031693	Sin3_C