mRNA_D-mesarthrocarpus_Contig102.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig102.1.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 6.030e-20 Identity = 56/109 (51.38%), Postives = 65/109 (59.63%), Query Frame = 1 Query: 1 GGATTCLPCPDGWLCSEGLAAPCGYGKAADSTTTNVLDTD------------ICEPCPSGGACPGGGIFEEXXXXXXXXXXAAALVCVACPPGMFSNVTGAKECLACXA 291
GG CLPCP GWLCS+GL PCGYG S TTN + + C CP+G CPGGG+F+EXXXXXXXXXX +C+ C PG F+N T A EC C A
Sbjct: 1556 GGYIECLPCPVGWLCSQGLGVPCGYGTTRTSLTTNAQEEEGSTSSVAGTYGGSCISCPAGMECPGGGVFQEXXXXXXXXXXXXXXMCMPCFPGSFTNDTAAAECEDCPA 1664
BLAST of mRNA_D-mesarthrocarpus_Contig102.1.1 vs. uniprot
Match: A0A1S3HF75_LINUN (proprotein convertase subtilisin/kexin type 5-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HF75_LINUN) HSP 1 Score: 54.3 bits (129), Expect = 5.260e-6 Identity = 31/88 (35.23%), Postives = 35/88 (39.77%), Query Frame = 1 Query: 16 CLPCPDGWLCSEGLAAPCGYGKAADSTTTNVLDTDICEPCPSGGACPGGGIFEEXXXXXXXXXXAAALVCVACPPGMFSNVTGAKECL 279
C PCP GW+CS+G AAPC D D C C G AC GG + C C PG F N +G CL
Sbjct: 119 CSPCPAGWICSQGYAAPCVDFTYVDYCNDTYCP-DSCAQCELGYACRGG---QRYQCEPGSYSDGNLKFCEMCAPGTFQNESGQDGCL 202
BLAST of mRNA_D-mesarthrocarpus_Contig102.1.1 vs. uniprot
Match: A0A1V9ZR10_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR10_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 9.930e-5 Identity = 33/101 (32.67%), Postives = 41/101 (40.59%), Query Frame = 1 Query: 7 ATTCLPCPDGWLCSEGLAAPCGYGKAADSTTTNVLDTDICEPCPSGGACPGGGIFEEXXXXXXXXXXAAALVCVACPPGMFSNVTGAKECLACXAGHTSNY 309
AT+CLPCP G C +GL +TT T C G P A VC C PG F+N +G+ CLAC G TS++
Sbjct: 1419 ATSCLPCPAGSACLQGLRL---------ATTVVAFTTGCSTVCDKGTFAP-----------------ERAGVCSRCLPGTFANTSGSTSCLACPPGSTSSF 1493 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig102.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig102.1.1 >prot_D-mesarthrocarpus_Contig102.1.1 ID=prot_D-mesarthrocarpus_Contig102.1.1|Name=mRNA_D-mesarthrocarpus_Contig102.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=127bp GGATTCLPCPDGWLCSEGLAAPCGYGKAADSTTTNVLDTDICEPCPSGGAback to top mRNA from alignment at D-mesarthrocarpus_Contig102:97..1015+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig102.1.1 ID=mRNA_D-mesarthrocarpus_Contig102.1.1|Name=mRNA_D-mesarthrocarpus_Contig102.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=919bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig102:97..1015+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig102:97..1015+ >mRNA_D-mesarthrocarpus_Contig102.1.1 ID=mRNA_D-mesarthrocarpus_Contig102.1.1|Name=mRNA_D-mesarthrocarpus_Contig102.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=381bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig102:97..1015+ (Discosporangium mesarthrocarpum MT17_79)back to top |