mRNA_D-mesarthrocarpus_Contig102.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig102.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig102.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig102.1.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 6.030e-20
Identity = 56/109 (51.38%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:    1 GGATTCLPCPDGWLCSEGLAAPCGYGKAADSTTTNVLDTD------------ICEPCPSGGACPGGGIFEEXXXXXXXXXXAAALVCVACPPGMFSNVTGAKECLACXA 291
            GG   CLPCP GWLCS+GL  PCGYG    S TTN  + +             C  CP+G  CPGGG+F+EXXXXXXXXXX    +C+ C PG F+N T A EC  C A
Sbjct: 1556 GGYIECLPCPVGWLCSQGLGVPCGYGTTRTSLTTNAQEEEGSTSSVAGTYGGSCISCPAGMECPGGGVFQEXXXXXXXXXXXXXXMCMPCFPGSFTNDTAAAECEDCPA 1664
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BLAST of mRNA_D-mesarthrocarpus_Contig102.1.1 vs. uniprot
Match: A0A1S3HF75_LINUN (proprotein convertase subtilisin/kexin type 5-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HF75_LINUN)

HSP 1 Score: 54.3 bits (129), Expect = 5.260e-6
Identity = 31/88 (35.23%), Postives = 35/88 (39.77%), Query Frame = 1 
Query:   16 CLPCPDGWLCSEGLAAPCGYGKAADSTTTNVLDTDICEPCPSGGACPGGGIFEEXXXXXXXXXXAAALVCVACPPGMFSNVTGAKECL 279
            C PCP GW+CS+G AAPC      D         D C  C  G AC GG   +                C  C PG F N +G   CL
Sbjct:  119 CSPCPAGWICSQGYAAPCVDFTYVDYCNDTYCP-DSCAQCELGYACRGG---QRYQCEPGSYSDGNLKFCEMCAPGTFQNESGQDGCL 202
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BLAST of mRNA_D-mesarthrocarpus_Contig102.1.1 vs. uniprot
Match: A0A1V9ZR10_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR10_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 9.930e-5
Identity = 33/101 (32.67%), Postives = 41/101 (40.59%), Query Frame = 1 
Query:    7 ATTCLPCPDGWLCSEGLAAPCGYGKAADSTTTNVLDTDICEPCPSGGACPGGGIFEEXXXXXXXXXXAAALVCVACPPGMFSNVTGAKECLACXAGHTSNY 309
            AT+CLPCP G  C +GL           +TT     T     C  G   P                   A VC  C PG F+N +G+  CLAC  G TS++
Sbjct: 1419 ATSCLPCPAGSACLQGLRL---------ATTVVAFTTGCSTVCDKGTFAP-----------------ERAGVCSRCLPGTFANTSGSTSCLACPPGSTSSF 1493
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig102.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G732_ECTSI6.030e-2051.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1S3HF75_LINUN5.260e-635.23proprotein convertase subtilisin/kexin type 5-like... [more]
A0A1V9ZR10_9STRA9.930e-532.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig102contigD-mesarthrocarpus_Contig102:97..1015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G732
PFAMsEphrin_rec_like,Kelch_3
Model size381
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.89e-21
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota
Descriptioncalcium ion binding
Cds size381
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.9331093-CDS-D-mesarthrocarpus_Contig102:96..3881680789162.9331093-CDS-D-mesarthrocarpus_Contig102:96..388Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig102 97..388 +
1680789162.9511733-CDS-D-mesarthrocarpus_Contig102:926..10151680789162.9511733-CDS-D-mesarthrocarpus_Contig102:926..1015Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig102 927..1015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig102.1.1prot_D-mesarthrocarpus_Contig102.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig102 97..1015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig102.1.1

>prot_D-mesarthrocarpus_Contig102.1.1 ID=prot_D-mesarthrocarpus_Contig102.1.1|Name=mRNA_D-mesarthrocarpus_Contig102.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=127bp
GGATTCLPCPDGWLCSEGLAAPCGYGKAADSTTTNVLDTDICEPCPSGGA
CPGGGIFEECPLGQYSPGGAAALVCVACPPGMFSNVTGAKECLACPAGHT
SNYGSSECQPCPPGEYSSAGQHPCKEC
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mRNA from alignment at D-mesarthrocarpus_Contig102:97..1015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig102.1.1 ID=mRNA_D-mesarthrocarpus_Contig102.1.1|Name=mRNA_D-mesarthrocarpus_Contig102.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=919bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig102:97..1015+ (Discosporangium mesarthrocarpum MT17_79)
GGGGGGGCTACCACATGTTTACCCTGCCCTGATGGCTGGCTCTGCTCCGA
GGGTCTCGCTGCTCCCTGCGGCTACGGCAAGGCAGCCGACTCCACTACCA
CCAACGTGTTAGATACGGATATTTGCGAACCCTGCCCCTCGGGGGGTGCC
TGTCCCGGCGGGGGGATCTTCGAGGAATGCCCCCTCGGGCAGTACTCTCC
AGGCGGTGCAGCAGCCCTTGTGTGTGTGGCATGCCCCCCTGGCATGTTCT
CAAACGTAACCGGTGCCAAGGAGTGTTTGGCTTGCCCCGCAGGTAAGAGC
GAGGGTGGAGAGATAGAGGGGAACTAACGATATGCGGAAAACTTTGTGTG
ACAGTACATCGAAGAAGTCACATAGTACTCATAGCGGTTGGGGTGGACGA
GTTCGGGTGGGGACAGGCAGGCAGTAAGCATGACCTGGATCCAGGGTAGG
AGTCGTAAACCTTGGTGTATTTCGGGTACTTGTTAACTCTTGGGTATACA
CAAGCCCACAACCAACCCAACCGTCCACTCATCTCCCTGTGTCCACCCCT
AGTCAACCCACTCTACTCCGCTCAACCTCCCATTCTCCCCCTCTTCCACC
AGGCTCTCCTTATCGACATCCAACCAGTTTTCACGCTGTATCTACCTATT
AATTCTCGATTTGCCTTATCTTCGTTCTTTTTGCGTGGGGTTTCAAGCCA
TCCATGCATGGTGGGTAGAGCGAAGCAAGGAAGTGCTCACCATGATCACT
GTTTGAAACTGAGAGACTGCATTGATGGTGGGGTTACATGCAAACATACA
CGCATAATCTCTAATCTCCTTCACACACAGGACACACTTCAAACTACGGA
TCTTCCGAGTGCCAGCCATGCCCTCCTGGGGAGTACTCCTCAGCGGGACA
GCACCCTTGTAAGGAGTGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig102:97..1015+

>mRNA_D-mesarthrocarpus_Contig102.1.1 ID=mRNA_D-mesarthrocarpus_Contig102.1.1|Name=mRNA_D-mesarthrocarpus_Contig102.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=381bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig102:97..1015+ (Discosporangium mesarthrocarpum MT17_79)
GGGGGGGCTACCACATGTTTACCCTGCCCTGATGGCTGGCTCTGCTCCGA
GGGTCTCGCTGCTCCCTGCGGCTACGGCAAGGCAGCCGACTCCACTACCA
CCAACGTGTTAGATACGGATATTTGCGAACCCTGCCCCTCGGGGGGTGCC
TGTCCCGGCGGGGGGATCTTCGAGGAATGCCCCCTCGGGCAGTACTCTCC
AGGCGGTGCAGCAGCCCTTGTGTGTGTGGCATGCCCCCCTGGCATGTTCT
CAAACGTAACCGGTGCCAAGGAGTGTTTGGCTTGCCCCGCAGGACACACT
TCAAACTACGGATCTTCCGAGTGCCAGCCATGCCCTCCTGGGGAGTACTC
CTCAGCGGGACAGCACCCTTGTAAGGAGTGC
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