mRNA_D-mesarthrocarpus_Contig9968.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9968.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9968.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9968.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9968contigD-mesarthrocarpus_Contig9968:1533..2776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI85
PFAMsEloA-BP1,RNase_T,zf-CCCH
Model size1244
Max annot lvl2759|Eukaryota
KEGG koko:K14570
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.58e-07
EggNOG OGsCOG0847@1|root,KOG2248@2759|Eukaryota
Descriptionexonuclease activity
Cds size1101
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.3773694-UTR-D-mesarthrocarpus_Contig9968:1532..16751680791146.3773694-UTR-D-mesarthrocarpus_Contig9968:1532..1675Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9968 1533..1675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.3919852-CDS-D-mesarthrocarpus_Contig9968:1675..27761680791146.3919852-CDS-D-mesarthrocarpus_Contig9968:1675..2776Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9968 1676..2776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9968.2.1prot_D-mesarthrocarpus_Contig9968.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9968 1676..2776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9968.2.1

>prot_D-mesarthrocarpus_Contig9968.2.1 ID=prot_D-mesarthrocarpus_Contig9968.2.1|Name=mRNA_D-mesarthrocarpus_Contig9968.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=367bp
MPKAKYTLVNTGDGPKDCAFFDSEMGCRNGSNCKFIHAGEATEGSLSQLK
KAVVAPLGPATATALGPVSASPPAPASAPAPATVPVVDKPITPPASAKKR
KGKSKKRGADEVSAAMVEASLPPPTPAAQAGPTPKKRRNKKGQQTVEVAA
PASPALQQTDIVYLPQPAPIQFPVKVVSQDPAQTPSLPPVANGGGVHVAI
PTDQDNNGRAPQKKANEKVCSFYNKKSGCKSGALCPFLHVGEAGGGNGGT
RGRAKPADPQGGPKKSPGPKQKKNTRKARSQTPIRNPAPAPAPAPPAVPK
CLFFPTPMGCKNGSACPFVHERTGGSTATPPSALLSAPPSVPPSTSALSP
APKAARVPSPAHAQPPA
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mRNA from alignment at D-mesarthrocarpus_Contig9968:1533..2776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9968.2.1 ID=mRNA_D-mesarthrocarpus_Contig9968.2.1|Name=mRNA_D-mesarthrocarpus_Contig9968.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1244bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9968:1533..2776+ (Discosporangium mesarthrocarpum MT17_79)
ATCACAGATCAGGACCATCCCTGTCTGGTAGACTCTAACCCAGGCACTCC
CGTTGAAGGTAAACCATAAATCTATAAGTGGGCTACGGGCCTACCAGGCT
CGGGTACTCCTCCGTAGCCCCCAGGCGCACTAAACGGGGCACCATGCCAA
AGGCCAAGTACACGCTGGTTAACACTGGAGACGGCCCCAAGGACTGCGCC
TTCTTCGATTCTGAGATGGGATGCAGGAATGGATCCAACTGTAAGTTCAT
TCATGCCGGGGAGGCGACGGAAGGATCTCTATCCCAGTTGAAGAAGGCAG
TTGTGGCTCCCCTAGGTCCCGCTACGGCTACTGCACTGGGTCCAGTCTCA
GCCTCTCCACCTGCCCCAGCTTCGGCTCCAGCACCTGCAACAGTCCCAGT
GGTCGATAAGCCTATTACGCCGCCAGCGTCGGCAAAGAAAAGAAAGGGAA
AGTCGAAGAAGAGAGGCGCGGACGAGGTCTCTGCCGCGATGGTTGAAGCC
TCACTACCACCACCAACCCCTGCAGCTCAAGCTGGCCCCACCCCGAAGAA
GCGTCGCAACAAGAAGGGTCAGCAGACCGTAGAGGTTGCGGCCCCAGCAA
GCCCGGCACTGCAGCAGACGGATATTGTCTATTTGCCCCAGCCTGCGCCG
ATACAGTTTCCCGTGAAGGTTGTGTCTCAAGACCCTGCGCAGACACCCTC
CTTGCCTCCAGTTGCGAACGGGGGAGGGGTGCACGTGGCGATCCCTACAG
ACCAGGACAACAATGGTAGGGCGCCGCAGAAGAAGGCAAACGAGAAGGTG
TGCTCTTTCTATAACAAGAAGTCGGGGTGCAAGTCGGGGGCCCTATGTCC
CTTCCTCCACGTGGGGGAGGCAGGTGGCGGCAACGGGGGTACGCGCGGAC
GCGCGAAGCCAGCTGATCCCCAGGGAGGCCCAAAGAAATCTCCCGGCCCC
AAGCAAAAAAAGAACACCCGAAAGGCGCGCTCTCAGACTCCGATCAGGAA
CCCAGCACCTGCTCCTGCCCCGGCCCCGCCGGCCGTTCCGAAGTGCCTAT
TTTTCCCGACTCCCATGGGATGCAAGAACGGATCCGCCTGCCCCTTCGTT
CATGAAAGGACTGGCGGTAGCACCGCAACCCCTCCCTCGGCTCTTCTTTC
GGCTCCTCCCTCAGTTCCTCCCTCGACTTCTGCCCTGTCTCCTGCCCCCA
AGGCAGCCCGTGTCCCTTCCCCTGCCCACGCCCAACCTCCCGCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9968:1533..2776+

>mRNA_D-mesarthrocarpus_Contig9968.2.1 ID=mRNA_D-mesarthrocarpus_Contig9968.2.1|Name=mRNA_D-mesarthrocarpus_Contig9968.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1101bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9968:1533..2776+ (Discosporangium mesarthrocarpum MT17_79)
ATGCCAAAGGCCAAGTACACGCTGGTTAACACTGGAGACGGCCCCAAGGA
CTGCGCCTTCTTCGATTCTGAGATGGGATGCAGGAATGGATCCAACTGTA
AGTTCATTCATGCCGGGGAGGCGACGGAAGGATCTCTATCCCAGTTGAAG
AAGGCAGTTGTGGCTCCCCTAGGTCCCGCTACGGCTACTGCACTGGGTCC
AGTCTCAGCCTCTCCACCTGCCCCAGCTTCGGCTCCAGCACCTGCAACAG
TCCCAGTGGTCGATAAGCCTATTACGCCGCCAGCGTCGGCAAAGAAAAGA
AAGGGAAAGTCGAAGAAGAGAGGCGCGGACGAGGTCTCTGCCGCGATGGT
TGAAGCCTCACTACCACCACCAACCCCTGCAGCTCAAGCTGGCCCCACCC
CGAAGAAGCGTCGCAACAAGAAGGGTCAGCAGACCGTAGAGGTTGCGGCC
CCAGCAAGCCCGGCACTGCAGCAGACGGATATTGTCTATTTGCCCCAGCC
TGCGCCGATACAGTTTCCCGTGAAGGTTGTGTCTCAAGACCCTGCGCAGA
CACCCTCCTTGCCTCCAGTTGCGAACGGGGGAGGGGTGCACGTGGCGATC
CCTACAGACCAGGACAACAATGGTAGGGCGCCGCAGAAGAAGGCAAACGA
GAAGGTGTGCTCTTTCTATAACAAGAAGTCGGGGTGCAAGTCGGGGGCCC
TATGTCCCTTCCTCCACGTGGGGGAGGCAGGTGGCGGCAACGGGGGTACG
CGCGGACGCGCGAAGCCAGCTGATCCCCAGGGAGGCCCAAAGAAATCTCC
CGGCCCCAAGCAAAAAAAGAACACCCGAAAGGCGCGCTCTCAGACTCCGA
TCAGGAACCCAGCACCTGCTCCTGCCCCGGCCCCGCCGGCCGTTCCGAAG
TGCCTATTTTTCCCGACTCCCATGGGATGCAAGAACGGATCCGCCTGCCC
CTTCGTTCATGAAAGGACTGGCGGTAGCACCGCAACCCCTCCCTCGGCTC
TTCTTTCGGCTCCTCCCTCAGTTCCTCCCTCGACTTCTGCCCTGTCTCCT
GCCCCCAAGGCAGCCCGTGTCCCTTCCCCTGCCCACGCCCAACCTCCCGC
C
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