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Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9968.2.1 vs. uniprot
Match: K0SL39_THAOC (C3H1-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SL39_THAOC) HSP 1 Score: 49.7 bits (117), Expect = 9.740e-5 Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 0 Query: 1 MPKAK-YTLVNT-GDGPKDCAFFDSEMGCRNGSNCK 34
M K K Y L ++ GDGPK CAFF SE GCRNGSNCK
Sbjct: 13 MGKTKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 48
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9968.2.1 vs. uniprot
Analysis Date: 2022-09-16 ( Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| K0SL39_THAOC | 9.740e-5 | 69.44 | C3H1-type domain-containing protein (Fragment) n=1... | [more] |
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000571 | Zinc finger, CCCH-type | SMART | SM00356 | c3hfinal6 | coord: 295..322
e-value: 11.0
score: 7.9
coord: 12..39
e-value: 0.75
score: 17.3
coord: 216..241
e-value: 0.02
score: 24.1 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 12..40
score: 11.234623 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 295..323
score: 11.779191 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 214..242
score: 11.27218 |
| None | No IPR available | GENE3D | 4.10.1000.10 | | coord: 203..324
e-value: 5.6E-9
score: 37.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 314..367 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 241..298 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 76..148 |
| None | No IPR available | PANTHER | PTHR33400 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED | coord: 300..322 |
| None | No IPR available | PANTHER | PTHR33400 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED | coord: 16..40 |
| None | No IPR available | PANTHER | PTHR33400 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED | coord: 96..240 |
| None | No IPR available | PANTHER | PTHR33400:SF9 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED | coord: 300..322
coord: 16..40 |
| None | No IPR available | PANTHER | PTHR33400:SF9 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED | coord: 96..240 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_D-mesarthrocarpus_Contig9968.2.1 ID=prot_D-mesarthrocarpus_Contig9968.2.1|Name=mRNA_D-mesarthrocarpus_Contig9968.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=367bp
MPKAKYTLVNTGDGPKDCAFFDSEMGCRNGSNCKFIHAGEATEGSLSQLK
KAVVAPLGPATATALGPVSASPPAPASAPAPATVPVVDKPITPPASAKKR
KGKSKKRGADEVSAAMVEASLPPPTPAAQAGPTPKKRRNKKGQQTVEVAA
PASPALQQTDIVYLPQPAPIQFPVKVVSQDPAQTPSLPPVANGGGVHVAI
PTDQDNNGRAPQKKANEKVCSFYNKKSGCKSGALCPFLHVGEAGGGNGGT
RGRAKPADPQGGPKKSPGPKQKKNTRKARSQTPIRNPAPAPAPAPPAVPK
CLFFPTPMGCKNGSACPFVHERTGGSTATPPSALLSAPPSVPPSTSALSP
APKAARVPSPAHAQPPA back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000571 | Znf_CCCH |
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